Wall clock time and date at job start Tue Mar 31 2020 22:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00017 * 2 1 4 4 C 1.50702 * 109.47098 * 270.00002 * 3 2 1 5 5 H 1.07997 * 120.00138 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99873 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99927 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99917 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47317 * 119.99913 * 8 6 4 11 11 H 1.48498 * 109.46674 * 240.00074 * 8 6 4 12 12 C 1.34787 * 119.99886 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99863 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99628 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.46665 * 180.02562 * 14 12 2 16 16 N 1.46903 * 109.47073 * 179.97438 * 15 14 12 17 17 C 1.48000 * 110.99947 * 298.72256 * 16 15 14 18 18 C 1.50453 * 112.83234 * 191.34129 * 17 16 15 19 19 C 1.54317 * 108.49865 * 93.72501 * 18 17 16 20 20 C 1.45877 * 112.18165 * 281.47771 * 19 18 17 21 21 H 1.09002 * 108.93979 * 300.42475 * 20 19 18 22 22 O 1.42897 * 108.93680 * 181.72805 * 20 19 18 23 23 C 1.42903 * 113.99636 * 90.00237 * 22 20 19 24 24 C 1.53777 * 113.61198 * 249.13358 * 23 22 20 25 25 C 1.53957 * 87.01894 * 220.05013 * 24 23 22 26 26 C 1.53779 * 87.11143 * 25.36780 * 25 24 23 27 27 C 1.54306 * 112.18956 * 61.12157 * 20 19 18 28 28 C 1.48000 * 110.99752 * 170.00260 * 16 15 14 29 29 H 1.09006 * 109.46991 * 269.99640 * 1 2 3 30 30 H 1.08998 * 109.47035 * 29.99574 * 1 2 3 31 31 H 1.08997 * 109.47656 * 149.99868 * 1 2 3 32 32 H 1.08994 * 109.47494 * 30.00579 * 3 2 1 33 33 H 1.09003 * 109.47129 * 150.00276 * 3 2 1 34 34 H 0.97000 * 119.99472 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47233 * 60.00638 * 14 12 2 36 36 H 1.09001 * 109.47503 * 299.99841 * 14 12 2 37 37 H 1.09003 * 109.47071 * 60.00461 * 15 14 12 38 38 H 1.08999 * 109.47498 * 300.00352 * 15 14 12 39 39 H 1.08998 * 108.81430 * 70.47570 * 17 16 15 40 40 H 1.08999 * 108.81144 * 312.20095 * 17 16 15 41 41 H 1.08993 * 109.63220 * 334.02265 * 18 17 16 42 42 H 1.08995 * 109.62716 * 213.43013 * 18 17 16 43 43 H 1.08995 * 108.93877 * 42.17954 * 19 18 17 44 44 H 1.09002 * 108.93541 * 160.78444 * 19 18 17 45 45 H 1.09000 * 112.85223 * 20.33530 * 23 22 20 46 46 H 1.08999 * 113.62073 * 334.57074 * 24 23 22 47 47 H 1.08996 * 113.61443 * 105.47779 * 24 23 22 48 48 H 1.09000 * 113.53850 * 270.81483 * 25 24 23 49 49 H 1.09003 * 113.74547 * 139.94741 * 25 24 23 50 50 H 1.09008 * 113.61390 * 220.09488 * 26 25 24 51 51 H 1.08996 * 113.69547 * 89.19696 * 26 25 24 52 52 H 1.08998 * 109.63527 * 41.15468 * 27 20 19 53 53 H 1.09007 * 109.63508 * 161.54770 * 27 20 19 54 54 H 1.08998 * 108.81455 * 323.97258 * 28 16 15 55 55 H 1.09006 * 108.71901 * 205.63755 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5551 3.6171 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8006 4.7382 -3.6666 11 1 4.9001 3.5246 -3.6679 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6352 -0.0005 16 7 1.6450 -4.9074 0.0001 17 6 0.8052 -5.0344 1.2121 18 6 0.2490 -6.4204 1.3945 19 6 1.2032 -7.2141 2.3115 20 6 2.3812 -7.6938 1.5973 21 1 2.0609 -8.3415 0.7812 22 8 3.1934 -8.4500 2.4976 23 6 2.8801 -9.8439 2.5317 24 6 2.2389 -10.2989 3.8533 25 6 3.1027 -11.5684 3.7422 26 6 4.0791 -10.7359 2.8947 27 6 3.2226 -6.5373 1.0179 28 6 2.5582 -6.0472 -0.2398 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6085 2.0283 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0319 4.4430 -0.8504 35 1 0.7584 -2.5298 -0.8903 36 1 0.7589 -2.5303 0.8897 37 1 3.0061 -3.5775 0.8895 38 1 3.0062 -3.5775 -0.8904 39 1 -0.0234 -4.3298 1.1410 40 1 1.4066 -4.7795 2.0847 41 1 0.1752 -6.9157 0.4264 42 1 -0.7371 -6.3615 1.8551 43 1 1.5236 -6.5704 3.1305 44 1 0.6674 -8.0689 2.7244 45 1 2.3395 -10.1781 1.6462 46 1 2.4971 -9.6682 4.7039 47 1 1.1686 -10.4899 3.7762 48 1 2.6220 -12.3749 3.1884 49 1 3.5217 -11.8988 4.6927 50 1 4.4922 -11.2791 2.0447 51 1 4.8421 -10.2244 3.4814 52 1 3.2778 -5.7255 1.7432 53 1 4.2272 -6.8936 0.7900 54 1 3.3281 -5.7380 -0.9466 55 1 1.9878 -6.8662 -0.6780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872279806.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:01 Heat of formation + Delta-G solvation = -82.448684 kcal Electronic energy + Delta-G solvation = -30002.009999 eV Core-core repulsion = 26038.617070 eV Total energy + Delta-G solvation = -3963.392929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.14359 -40.59688 -39.54139 -37.27486 -36.57624 -34.85586 -34.59460 -33.08078 -31.56881 -29.66300 -27.59469 -27.11737 -26.51630 -26.26994 -25.23636 -24.84427 -23.35705 -21.76609 -20.66675 -20.35900 -19.88849 -18.70942 -18.35448 -18.04652 -17.20054 -16.97195 -16.75875 -16.43167 -16.25118 -15.91721 -15.82951 -15.46085 -15.23384 -14.63548 -14.45432 -14.14013 -14.03056 -13.97464 -13.70083 -13.49006 -13.44857 -13.39068 -13.28180 -13.24123 -12.97462 -12.85083 -12.73200 -12.51256 -12.41821 -12.23385 -12.19890 -12.12158 -12.00278 -11.79265 -11.68070 -11.57714 -11.43511 -11.38021 -11.14872 -10.65864 -10.59095 -10.32114 -9.41159 -9.19162 -8.23218 -6.38320 1.35751 1.38353 1.50416 1.85119 2.28907 2.42003 2.68168 2.94583 3.06142 3.57089 3.67157 3.76308 3.78956 3.85901 3.93750 3.96294 3.98496 4.08477 4.15723 4.27542 4.29823 4.35683 4.41928 4.45806 4.48326 4.63245 4.65398 4.72184 4.74371 4.80335 4.81234 4.83998 4.90534 4.95243 4.97114 5.01798 5.03251 5.03584 5.07347 5.08423 5.16155 5.21111 5.23552 5.25377 5.26262 5.37535 5.44012 5.56313 5.84408 6.04822 6.05655 6.20912 6.42311 6.69501 6.80164 7.27719 7.49426 8.84011 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026169 B = 0.001821 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.730231 B =15368.329180 C =15757.045568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.115 4.115 15 C 0.084 3.916 16 N -0.544 5.544 17 C 0.052 3.948 18 C -0.107 4.107 19 C -0.140 4.140 20 C 0.100 3.900 21 H 0.073 0.927 22 O -0.394 6.394 23 C 0.054 3.946 24 C -0.158 4.158 25 C -0.134 4.134 26 C -0.143 4.143 27 C -0.143 4.143 28 C 0.063 3.937 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.023 0.977 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.017 0.983 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.021 0.979 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.048 0.952 53 H 0.072 0.928 54 H 0.069 0.931 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.629 -31.256 5.842 33.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.155 4.155 15 C -0.044 4.044 16 N -0.268 5.268 17 C -0.074 4.074 18 C -0.145 4.145 19 C -0.178 4.178 20 C 0.043 3.957 21 H 0.090 0.910 22 O -0.314 6.314 23 C -0.004 4.004 24 C -0.196 4.196 25 C -0.171 4.171 26 C -0.181 4.181 27 C -0.182 4.182 28 C -0.064 4.064 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.041 0.959 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.039 0.961 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.094 0.906 52 H 0.067 0.933 53 H 0.091 0.909 54 H 0.087 0.913 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.121 -30.995 5.640 33.090 hybrid contribution 1.254 1.003 0.125 1.611 sum -8.867 -29.992 5.766 31.802 Atomic orbital electron populations 1.21943 0.77732 1.04122 1.02568 1.48207 1.08514 1.06360 1.71195 1.18752 0.91047 0.80568 0.96054 1.21752 1.36732 1.06553 0.93053 0.92766 1.25905 0.94894 0.96445 1.02136 1.70068 1.38973 1.14846 1.33038 0.85332 0.77843 0.78442 0.78967 1.19007 1.19291 1.20818 1.21433 0.87804 0.86802 0.75756 1.90631 1.16849 1.88300 1.52701 1.21579 0.98891 0.88819 1.06211 1.21610 0.94203 0.88272 1.00334 1.61966 1.24621 1.01098 1.39158 1.21986 0.96677 0.99100 0.89678 1.21320 0.98757 0.93897 1.00508 1.21107 0.96369 1.01124 0.99201 1.21176 0.90452 0.92571 0.91543 0.90950 1.88006 1.59755 1.19663 1.63996 1.24050 0.97721 0.80435 0.98188 1.23505 1.00271 0.97644 0.98192 1.22696 0.97241 0.96343 1.00858 1.23231 0.97105 0.97065 1.00700 1.21973 1.00206 0.97598 0.98422 1.21844 0.95100 0.93621 0.95876 0.91166 0.91647 0.88528 0.95887 0.98660 0.92416 0.86398 0.86912 0.96451 0.91817 0.89515 0.96052 0.89904 0.88846 0.92993 0.90717 0.88289 0.90696 0.90355 0.88515 0.90485 0.90270 0.90599 0.93270 0.90885 0.91265 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 10.24 127.77 1.31 3.64 16 2 N -0.61 -26.50 2.86 -851.15 -2.43 -28.93 16 3 C 0.26 14.30 5.16 85.63 0.44 14.74 16 4 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 5 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.00 0.29 5.46 84.65 0.46 0.75 16 7 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 8 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.49 20.93 7.67 87.65 0.67 21.60 16 13 O -0.60 -32.24 15.56 -3.03 -0.05 -32.28 16 14 C -0.12 -3.24 4.06 29.85 0.12 -3.12 16 15 C 0.08 2.41 4.15 86.30 0.36 2.77 16 16 N -0.54 -11.54 4.71 -900.23 -4.24 -15.79 16 17 C 0.05 0.92 4.32 85.27 0.37 1.29 16 18 C -0.11 -1.37 5.63 30.22 0.17 -1.20 16 19 C -0.14 -2.08 4.81 28.86 0.14 -1.94 16 20 C 0.10 1.64 2.16 28.85 0.06 1.70 16 21 H 0.07 0.95 6.74 -2.39 -0.02 0.94 16 22 O -0.39 -7.69 9.91 -148.98 -1.48 -9.17 16 23 C 0.05 0.74 4.13 31.12 0.13 0.87 16 24 C -0.16 -1.89 7.93 31.18 0.25 -1.65 16 25 C -0.13 -1.27 8.09 31.18 0.25 -1.02 16 26 C -0.14 -1.81 7.91 31.12 0.25 -1.57 16 27 C -0.14 -2.85 5.23 30.21 0.16 -2.70 16 28 C 0.06 1.19 5.16 85.27 0.44 1.63 16 29 H 0.07 1.72 8.14 -2.38 -0.02 1.71 16 30 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 31 H 0.10 2.14 6.44 -2.39 -0.02 2.13 16 32 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 33 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.12 2.85 7.40 -2.39 -0.02 2.83 16 36 H 0.11 2.54 6.63 -2.39 -0.02 2.52 16 37 H 0.02 0.57 7.77 -2.39 -0.02 0.55 16 38 H 0.06 2.06 7.75 -2.39 -0.02 2.04 16 39 H 0.09 1.34 6.91 -2.39 -0.02 1.33 16 40 H 0.02 0.45 6.44 -2.39 -0.02 0.43 16 41 H 0.08 0.99 7.08 -2.39 -0.02 0.97 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 0.97 7.52 -2.39 -0.02 0.95 16 44 H 0.07 0.95 8.03 -2.39 -0.02 0.93 16 45 H 0.10 1.05 7.43 -2.39 -0.02 1.03 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 51 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.05 1.21 6.74 -2.39 -0.02 1.19 16 53 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 54 H 0.07 1.42 7.64 -2.39 -0.02 1.40 16 55 H 0.09 1.40 6.58 -2.38 -0.02 1.39 16 Total: -1.00 -76.77 418.72 0.77 -76.00 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.84 Total: 15.44 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 5.82 Total: 4.04 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -6.39 Total: -101.72 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.52 Total: -41.45 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.77 0.77 -76.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872279806.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.450 kcal (2) G-P(sol) polarization free energy of solvation -76.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds