Wall clock time and date at job start Tue Mar 31 2020 23:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46775 * 1 3 3 C 1.43539 * 112.02290 * 2 1 4 4 C 1.54548 * 109.66394 * 223.65044 * 3 2 1 5 5 N 1.47911 * 110.10683 * 295.87699 * 4 3 2 6 6 C 1.34457 * 118.95969 * 165.52791 * 5 4 3 7 7 O 1.21592 * 119.99889 * 179.90510 * 6 5 4 8 8 N 1.34768 * 120.00059 * 359.90660 * 6 5 4 9 9 C 1.46496 * 120.00233 * 180.02562 * 8 6 5 10 10 C 1.53045 * 109.45993 * 275.02608 * 9 8 6 11 11 C 1.53191 * 109.31254 * 178.60033 * 10 9 8 12 12 N 1.46932 * 108.76567 * 54.65359 * 11 10 9 13 13 C 1.36938 * 120.62741 * 126.36096 * 12 11 10 14 14 H 1.07998 * 120.00514 * 331.86158 * 13 12 11 15 15 C 1.38813 * 119.99690 * 151.86195 * 13 12 11 16 16 N 1.31621 * 120.00158 * 343.06264 * 15 13 12 17 17 Si 1.86799 * 119.99934 * 163.06587 * 15 13 12 18 18 H 1.48507 * 109.47167 * 89.99970 * 17 15 13 19 19 H 1.48501 * 109.46956 * 209.99545 * 17 15 13 20 20 H 1.48494 * 109.47148 * 330.00008 * 17 15 13 21 21 C 1.46921 * 118.73908 * 306.38123 * 12 11 10 22 22 C 1.53038 * 109.46187 * 154.96889 * 9 8 6 23 23 C 1.44745 * 121.77371 * 345.42818 * 5 4 3 24 24 C 1.54363 * 109.94127 * 81.21644 * 23 5 4 25 25 C 1.45008 * 112.04086 * 132.46465 * 2 1 3 26 26 C 1.54503 * 106.81429 * 45.67799 * 25 2 1 27 27 C 1.53016 * 110.31702 * 290.48761 * 25 2 1 28 28 H 1.09003 * 109.47229 * 287.53584 * 1 2 3 29 29 H 1.09001 * 109.47116 * 47.53914 * 1 2 3 30 30 H 1.09004 * 109.47650 * 167.53527 * 1 2 3 31 31 H 1.08449 * 112.64295 * 102.08060 * 3 2 1 32 32 H 1.09736 * 109.23502 * 341.89071 * 3 2 1 33 33 H 1.08722 * 108.98444 * 176.03049 * 4 3 2 34 34 H 1.08662 * 109.16815 * 56.01240 * 4 3 2 35 35 H 0.97000 * 120.00235 * 359.97438 * 8 6 5 36 36 H 1.09003 * 109.46294 * 34.99807 * 9 8 6 37 37 H 1.09004 * 109.49120 * 298.56043 * 10 9 8 38 38 H 1.08997 * 109.49644 * 58.65999 * 10 9 8 39 39 H 1.08999 * 109.59781 * 294.86901 * 11 10 9 40 40 H 1.08997 * 109.70413 * 174.50267 * 11 10 9 41 41 H 0.97004 * 120.00152 * 179.97438 * 16 15 13 42 42 H 1.08998 * 109.58960 * 293.82569 * 21 12 11 43 43 H 1.09003 * 109.70382 * 173.46285 * 21 12 11 44 44 H 1.09002 * 109.49989 * 301.33553 * 22 9 8 45 45 H 1.09004 * 109.50212 * 61.43554 * 22 9 8 46 46 H 1.08838 * 109.56460 * 319.30039 * 23 5 4 47 47 H 1.09507 * 108.73906 * 200.77935 * 23 5 4 48 48 H 1.09512 * 109.19027 * 160.93559 * 24 23 5 49 49 H 1.09444 * 109.36809 * 43.17848 * 24 23 5 50 50 H 1.08994 * 109.47379 * 302.17884 * 26 25 2 51 51 H 1.08998 * 109.47251 * 182.17504 * 26 25 2 52 52 H 1.08999 * 109.47261 * 62.17910 * 26 25 2 53 53 H 1.08998 * 109.46809 * 175.47190 * 27 25 2 54 54 H 1.08994 * 109.47197 * 295.47823 * 27 25 2 55 55 H 1.09005 * 109.46507 * 55.47780 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4678 0.0000 0.0000 3 6 2.0060 1.3307 0.0000 4 6 3.1772 1.4179 -1.0046 5 7 4.2850 0.5386 -0.5716 6 6 5.2637 0.2461 -1.4459 7 8 6.1844 -0.4734 -1.1095 8 7 5.2244 0.7505 -2.6950 9 6 6.2905 0.4313 -3.6478 10 6 7.4580 1.4009 -3.4501 11 6 8.5848 1.0423 -4.4240 12 7 8.0414 1.0229 -5.7890 13 6 8.6234 1.7645 -6.7822 14 1 9.1520 2.6740 -6.5379 15 6 8.5338 1.3473 -8.1031 16 7 8.1968 0.1054 -8.3796 17 14 8.8916 2.5485 -9.4883 18 1 10.3360 2.4947 -9.8294 19 1 8.0873 2.1817 -10.6815 20 1 8.5361 3.9236 -9.0551 21 6 6.8616 0.1929 -6.0679 22 6 5.7542 0.5608 -5.0753 23 6 4.3432 -0.0116 0.7659 24 6 3.4357 -1.2566 0.8629 25 6 2.0119 -0.9075 0.9915 26 6 1.2218 -2.2295 0.8688 27 6 1.7458 -0.3756 2.4014 28 1 -0.3634 0.3096 0.9799 29 1 -0.3633 0.6938 -0.7582 30 1 -0.3634 -1.0034 -0.2218 31 1 2.3567 1.6392 0.9787 32 1 1.2286 2.0351 -0.3221 33 1 3.5304 2.4453 -1.0477 34 1 2.8299 1.1051 -1.9855 35 1 4.4898 1.3242 -2.9636 36 1 6.6338 -0.5895 -3.4801 37 1 7.1213 2.4196 -3.6421 38 1 7.8244 1.3251 -2.4263 39 1 8.9837 0.0588 -4.1755 40 1 9.3787 1.7861 -4.3574 41 1 8.1338 -0.1861 -9.3027 42 1 7.1199 -0.8598 -5.9534 43 1 6.5158 0.3758 -7.0853 44 1 4.9077 -0.1129 -5.2085 45 1 5.4337 1.5876 -5.2519 46 1 4.0368 0.7456 1.4851 47 1 5.3769 -0.3007 0.9827 48 1 3.7336 -1.8523 1.7322 49 1 3.5717 -1.8753 -0.0295 50 1 0.1601 -2.0335 1.0185 51 1 1.5714 -2.9332 1.6243 52 1 1.3766 -2.6546 -0.1228 53 1 2.0881 -1.1050 3.1355 54 1 2.2827 0.5623 2.5433 55 1 0.6767 -0.2053 2.5296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875251896.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:21 Heat of formation + Delta-G solvation = -6.343682 kcal Electronic energy + Delta-G solvation = -31542.150045 eV Core-core repulsion = 27614.350028 eV Total energy + Delta-G solvation = -3927.800017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.77270 -40.46756 -39.04665 -36.43813 -36.04854 -34.91177 -33.84532 -31.86375 -31.32376 -30.19196 -29.76762 -28.14128 -26.94395 -26.11998 -24.78669 -23.99989 -23.69910 -22.88215 -21.11389 -20.45783 -19.82284 -19.13695 -18.52701 -17.53242 -17.09182 -16.81868 -16.68645 -16.24589 -15.99037 -15.59612 -15.36579 -15.33462 -15.17121 -14.77534 -14.63366 -14.49781 -14.24706 -14.03341 -13.86606 -13.30127 -13.21607 -13.16982 -13.04112 -12.99564 -12.85833 -12.77010 -12.58736 -12.49469 -12.32531 -12.19739 -12.16477 -12.06965 -12.00646 -11.86332 -11.61869 -11.55032 -11.36866 -11.26002 -11.05078 -10.54850 -10.05926 -9.39873 -8.94806 -8.70077 -7.86747 -5.32581 1.49219 1.50113 1.60590 1.73609 2.22438 2.53083 2.86183 3.02804 3.29728 3.66813 3.74474 3.87946 3.92330 3.96828 4.07888 4.09427 4.15677 4.29273 4.35723 4.42139 4.47031 4.54727 4.59309 4.63123 4.66051 4.72446 4.76171 4.77335 4.81761 4.84346 4.87285 4.89107 4.95313 4.98937 5.01685 5.07690 5.10702 5.11539 5.16875 5.24951 5.29995 5.32403 5.47151 5.50142 5.62984 5.65017 5.68325 5.74298 6.03115 6.33964 6.39858 6.52618 7.04325 7.15141 7.66194 7.84497 8.38289 9.20643 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.002329 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.320971 B =12019.287740 C =12343.633515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.572 5.572 3 C 0.068 3.932 4 C 0.106 3.894 5 N -0.613 5.613 6 C 0.697 3.303 7 O -0.640 6.640 8 N -0.727 5.727 9 C 0.182 3.818 10 C -0.121 4.121 11 C 0.145 3.855 12 N -0.608 5.608 13 C -0.263 4.263 14 H 0.068 0.932 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.268 1.268 21 C 0.181 3.819 22 C -0.126 4.126 23 C 0.133 3.867 24 C -0.114 4.114 25 C 0.132 3.868 26 C -0.150 4.150 27 C -0.176 4.176 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.406 0.594 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.005 0.995 40 H 0.058 0.942 41 H 0.251 0.749 42 H -0.008 1.008 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.040 0.960 50 H 0.071 0.929 51 H 0.062 0.938 52 H 0.043 0.957 53 H 0.067 0.933 54 H 0.056 0.944 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.932 2.914 22.453 30.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.296 5.296 3 C -0.061 4.061 4 C -0.016 4.016 5 N -0.350 5.350 6 C 0.398 3.602 7 O -0.522 6.522 8 N -0.382 5.382 9 C 0.076 3.924 10 C -0.161 4.161 11 C 0.019 3.981 12 N -0.332 5.332 13 C -0.394 4.394 14 H 0.086 0.914 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.798 3.202 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.193 1.193 21 C 0.054 3.946 22 C -0.166 4.166 23 C 0.009 3.991 24 C -0.153 4.153 25 C 0.043 3.957 26 C -0.207 4.207 27 C -0.235 4.235 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.243 0.757 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.023 0.977 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.010 0.990 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.059 0.941 50 H 0.090 0.910 51 H 0.081 0.919 52 H 0.062 0.938 53 H 0.086 0.914 54 H 0.075 0.925 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.192 2.169 22.187 30.078 hybrid contribution 0.185 0.463 -0.530 0.727 sum -20.007 2.632 21.657 29.601 Atomic orbital electron populations 1.22416 0.84731 1.03005 1.00728 1.57562 1.07984 1.11349 1.52751 1.21727 0.96468 0.89482 0.98398 1.22437 0.86451 0.93204 0.99536 1.46943 1.23558 1.52224 1.12257 1.16107 0.82571 0.80163 0.81367 1.90866 1.38372 1.44406 1.78576 1.45232 1.27933 1.54302 1.10713 1.20457 0.86763 0.97677 0.87502 1.22159 0.96312 0.99369 0.98281 1.20958 0.94679 0.97653 0.84791 1.44347 1.30227 1.53299 1.05330 1.19519 1.30870 1.01825 0.87137 0.91438 1.25842 1.01391 0.97016 1.00346 1.70194 1.53775 1.16011 1.18264 0.85243 0.77291 0.79032 0.78649 1.21356 1.21731 1.19298 1.20541 0.85498 0.91233 0.97295 1.22243 0.98842 1.02222 0.93278 1.21239 1.00184 0.95419 0.82265 1.21231 0.94180 0.97613 1.02253 1.19386 0.93973 0.92770 0.89602 1.22543 1.00608 0.96093 1.01467 1.22528 1.02066 1.01919 0.96994 0.94671 0.90668 0.91105 0.92475 0.88023 0.90177 0.90871 0.75704 0.93115 0.91551 0.92585 0.97702 0.92324 0.94004 0.98959 0.91727 0.90872 0.91071 0.89124 0.91935 0.89403 0.94133 0.91012 0.91917 0.93763 0.91373 0.92463 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 8.47 127.71 1.08 1.43 16 2 N -0.57 -7.55 3.93 -889.98 -3.50 -11.04 16 3 C 0.07 0.75 4.99 87.45 0.44 1.19 16 4 C 0.11 1.63 5.62 86.64 0.49 2.12 16 5 N -0.61 -14.16 2.87 -835.66 -2.40 -16.56 16 6 C 0.70 22.29 8.20 179.16 1.47 23.76 16 7 O -0.64 -26.45 15.32 -4.01 -0.06 -26.51 16 8 N -0.73 -21.54 4.94 -457.96 -2.26 -23.81 16 9 C 0.18 6.67 2.42 45.02 0.11 6.78 16 10 C -0.12 -4.59 5.65 30.67 0.17 -4.42 16 11 C 0.15 6.57 6.52 86.36 0.56 7.14 16 12 N -0.61 -31.58 2.99 -699.08 -2.09 -33.67 16 13 C -0.26 -14.70 9.58 84.03 0.81 -13.90 16 14 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 15 C -0.05 -2.85 4.92 84.86 0.42 -2.44 16 16 N -0.94 -56.00 11.19 21.65 0.24 -55.76 16 17 Si 0.97 44.90 29.59 68.60 2.03 46.93 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 C 0.18 8.90 5.30 86.37 0.46 9.36 16 22 C -0.13 -4.72 5.55 30.67 0.17 -4.55 16 23 C 0.13 2.74 5.39 87.17 0.47 3.21 16 24 C -0.11 -2.10 4.36 29.24 0.13 -1.97 16 25 C 0.13 1.81 0.59 2.58 0.00 1.81 16 26 C -0.15 -1.97 7.27 72.49 0.53 -1.44 16 27 C -0.18 -1.76 7.70 71.99 0.55 -1.21 16 28 H 0.03 0.27 6.63 -2.39 -0.02 0.25 16 29 H 0.07 0.58 7.75 -2.39 -0.02 0.57 16 30 H 0.07 0.71 5.99 -2.39 -0.01 0.70 16 31 H 0.06 0.59 5.15 -2.68 -0.01 0.58 16 32 H 0.10 0.71 7.43 -1.99 -0.01 0.69 16 33 H 0.08 1.01 8.12 -2.53 -0.02 0.99 16 34 H 0.07 1.18 7.15 -2.57 -0.02 1.16 16 35 H 0.41 9.51 6.59 -92.71 -0.61 8.90 16 36 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 37 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 41 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.06 3.52 6.06 -2.39 -0.01 3.51 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.09 1.41 5.71 -2.47 -0.01 1.39 16 47 H 0.06 1.63 7.04 -2.12 -0.01 1.62 16 48 H 0.09 1.39 7.94 -2.11 -0.02 1.38 16 49 H 0.04 1.02 7.99 -2.15 -0.02 1.00 16 50 H 0.07 0.75 5.98 -2.39 -0.01 0.74 16 51 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 52 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 53 H 0.07 0.64 7.99 -2.39 -0.02 0.62 16 54 H 0.06 0.57 5.65 -2.39 -0.01 0.55 16 55 H 0.06 0.55 6.61 -2.38 -0.02 0.54 16 Total: -1.00 -72.00 397.25 0.07 -71.93 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.27 Total: 21.63 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 7.85 Total: 26.87 kcal Atomic # 7 Polarization: -130.84 SS G_CDS: -10.01 Total: -140.85 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.06 Total: -26.51 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -72.00 0.07 -71.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875251896.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.585 kcal (2) G-P(sol) polarization free energy of solvation -72.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds