Wall clock time and date at job start Tue Mar 31 2020 23:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.50224 * 2 1 4 4 C 1.53206 * 109.48971 * 239.90129 * 2 1 3 5 5 C 1.53121 * 109.11453 * 182.41843 * 4 2 1 6 6 C 1.53039 * 109.30772 * 57.63954 * 5 4 2 7 7 H 1.09001 * 109.46176 * 60.80473 * 6 5 4 8 8 C 1.53001 * 109.46104 * 180.78323 * 6 5 4 9 9 N 1.46498 * 109.46995 * 174.99964 * 8 6 5 10 10 C 1.34779 * 120.00009 * 179.97438 * 9 8 6 11 11 O 1.21586 * 119.99887 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00007 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99770 * 180.02562 * 12 10 9 14 14 C 1.53035 * 109.46027 * 275.03386 * 13 12 10 15 15 C 1.53199 * 109.31157 * 178.60372 * 14 13 12 16 16 N 1.46927 * 108.76299 * 54.65412 * 15 14 13 17 17 C 1.36935 * 120.62747 * 126.40843 * 16 15 14 18 18 H 1.08002 * 119.99946 * 331.80753 * 17 16 15 19 19 C 1.38813 * 119.99763 * 151.80374 * 17 16 15 20 20 N 1.31615 * 120.00036 * 343.08845 * 19 17 16 21 21 Si 1.86798 * 119.99803 * 163.08688 * 19 17 16 22 22 H 1.48500 * 109.47361 * 60.00087 * 21 19 17 23 23 H 1.48502 * 109.47144 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47357 * 300.00053 * 21 19 17 25 25 C 1.46926 * 118.73887 * 306.38381 * 16 15 14 26 26 C 1.53044 * 109.45712 * 154.98005 * 13 12 10 27 27 N 1.46846 * 109.52441 * 300.80058 * 6 5 4 28 28 C 1.46847 * 111.19992 * 61.74106 * 27 6 5 29 29 H 1.09000 * 109.46695 * 299.91489 * 1 2 3 30 30 H 1.08995 * 109.47122 * 59.91787 * 1 2 3 31 31 H 1.09004 * 109.47132 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47037 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46821 * 300.08255 * 3 2 1 34 34 H 1.09002 * 109.46650 * 60.08012 * 3 2 1 35 35 H 1.09003 * 109.57044 * 62.51025 * 4 2 1 36 36 H 1.08995 * 109.51517 * 302.29582 * 4 2 1 37 37 H 1.08995 * 109.50630 * 297.68061 * 5 4 2 38 38 H 1.08998 * 109.50271 * 177.59957 * 5 4 2 39 39 H 1.09002 * 109.47130 * 294.99854 * 8 6 5 40 40 H 1.08996 * 109.46787 * 55.00022 * 8 6 5 41 41 H 0.96994 * 120.00160 * 0.02562 * 9 8 6 42 42 H 0.96994 * 120.00161 * 0.02562 * 12 10 9 43 43 H 1.08997 * 109.45667 * 35.01066 * 13 12 10 44 44 H 1.09004 * 109.50105 * 298.56724 * 14 13 12 45 45 H 1.08999 * 109.49854 * 58.66261 * 14 13 12 46 46 H 1.09001 * 109.59236 * 294.86735 * 15 14 13 47 47 H 1.08997 * 109.70082 * 174.50350 * 15 14 13 48 48 H 0.97004 * 119.99642 * 179.97438 * 20 19 17 49 49 H 1.09002 * 109.58466 * 293.82403 * 25 16 15 50 50 H 1.08999 * 109.58191 * 173.39676 * 25 16 15 51 51 H 1.09004 * 109.49532 * 301.34163 * 26 13 12 52 52 H 1.09000 * 109.49941 * 61.43256 * 26 13 12 53 53 H 1.00902 * 111.00128 * 297.64273 * 27 6 5 54 54 H 1.09004 * 109.45779 * 58.27535 * 28 27 6 55 55 H 1.09002 * 109.46316 * 178.25179 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0412 -0.7243 -1.2495 5 6 3.5712 -0.7723 -1.2106 6 6 4.0230 -1.4729 0.0728 7 1 3.6373 -2.4924 0.0850 8 6 5.5518 -1.5055 0.1247 9 7 5.9850 -2.0680 1.4061 10 6 7.2992 -2.1951 1.6764 11 8 8.1253 -1.8426 0.8569 12 7 7.6978 -2.7121 2.8555 13 6 9.1264 -2.8497 3.1495 14 6 9.6429 -4.1659 2.5639 15 6 11.1442 -4.2899 2.8430 16 7 11.3702 -4.1424 4.2872 17 6 12.0668 -5.0927 4.9850 18 1 12.0657 -6.1189 4.6482 19 6 12.7742 -4.7371 6.1251 20 7 13.0582 -3.4728 6.3558 21 14 13.3232 -6.0529 7.3320 22 1 14.2173 -7.0164 6.6411 23 1 14.0545 -5.4180 8.4578 24 1 12.1337 -6.7703 7.8571 25 6 10.8352 -2.9556 4.9684 26 6 9.3376 -2.8464 4.6653 27 7 3.5093 -0.7417 1.2380 28 6 2.0410 -0.7230 1.2482 29 1 -0.3633 0.5125 0.8908 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1308 1.4416 -0.0005 33 1 1.6765 1.9566 -0.8893 34 1 1.6789 1.9558 0.8907 35 1 1.7161 -0.1880 -2.1411 36 1 1.6452 -1.7396 -1.2694 37 1 3.9678 0.2428 -1.2300 38 1 3.9401 -1.3237 -2.0755 39 1 5.9299 -2.1235 -0.6898 40 1 5.9404 -0.4923 0.0226 41 1 5.3260 -2.3496 2.0598 42 1 7.0388 -2.9930 3.5095 43 1 9.6705 -2.0162 2.7053 44 1 9.1166 -5.0011 3.0260 45 1 9.4709 -4.1776 1.4877 46 1 11.6814 -3.5074 2.3072 47 1 11.4993 -5.2670 2.5155 48 1 13.5522 -3.2243 7.1528 49 1 11.3473 -2.0643 4.6059 50 1 10.9842 -3.0534 6.0437 51 1 8.9481 -1.9188 5.0849 52 1 8.8141 -3.6942 5.1074 53 1 3.8831 0.1949 1.2707 54 1 1.6649 -1.7461 1.2549 55 1 1.6906 -0.2014 2.1389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891524880.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:17 Heat of formation + Delta-G solvation = -50.226818 kcal Electronic energy + Delta-G solvation = -30115.089036 eV Core-core repulsion = 26185.386104 eV Total energy + Delta-G solvation = -3929.702933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.26436 -40.61584 -39.05805 -36.55231 -35.83603 -34.29103 -33.62611 -32.53957 -31.74249 -31.09603 -28.85160 -28.25186 -26.83459 -25.47696 -24.36173 -23.87846 -23.41064 -22.11570 -21.64303 -21.00238 -19.73021 -19.29588 -18.58262 -17.46745 -16.81083 -16.71442 -16.41012 -15.99132 -15.87644 -15.80597 -15.44922 -15.32313 -15.20285 -14.82579 -14.75725 -14.63603 -14.36183 -14.12978 -13.96953 -13.46061 -13.22619 -13.12707 -12.97679 -12.87005 -12.69521 -12.55628 -12.52326 -12.42240 -12.35116 -12.20716 -12.14863 -12.01333 -11.87491 -11.84603 -11.53439 -11.35365 -11.30130 -11.19464 -11.12516 -10.53260 -10.22650 -9.63134 -9.23542 -8.68899 -7.85838 -5.31650 1.50027 1.51910 1.59157 1.80422 2.26691 2.53731 3.20747 3.29448 3.42914 3.68280 3.71820 3.78191 3.91037 3.93827 4.04188 4.10176 4.12571 4.28620 4.37972 4.45826 4.49003 4.52696 4.64319 4.67797 4.70163 4.78105 4.81779 4.84545 4.87914 4.90453 4.95249 4.97226 5.05798 5.06975 5.09597 5.10053 5.14507 5.18996 5.22658 5.32146 5.36759 5.40036 5.49116 5.49474 5.60956 5.66281 5.67493 5.72323 6.09857 6.16453 6.40820 6.44321 7.16181 7.24843 7.71487 7.85738 8.39246 9.21163 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.031586 B = 0.001781 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.249614 B =15721.979737 C =16026.412489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.103 4.103 5 C -0.149 4.149 6 C 0.090 3.910 7 H 0.091 0.909 8 C 0.149 3.851 9 N -0.720 5.720 10 C 0.697 3.303 11 O -0.642 6.642 12 N -0.727 5.727 13 C 0.182 3.818 14 C -0.123 4.123 15 C 0.145 3.855 16 N -0.608 5.608 17 C -0.265 4.265 18 H 0.067 0.933 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.179 3.821 26 C -0.127 4.127 27 N -0.682 5.682 28 C 0.072 3.928 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.414 0.586 42 H 0.409 0.591 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.006 0.994 47 H 0.057 0.943 48 H 0.251 0.749 49 H -0.006 1.006 50 H 0.064 0.936 51 H 0.075 0.925 52 H 0.070 0.930 53 H 0.342 0.658 54 H 0.074 0.926 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.872 6.816 -12.542 33.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.140 4.140 5 C -0.188 4.188 6 C -0.021 4.021 7 H 0.109 0.891 8 C 0.024 3.976 9 N -0.377 5.377 10 C 0.397 3.603 11 O -0.525 6.525 12 N -0.382 5.382 13 C 0.077 3.923 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.085 0.915 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.052 3.948 26 C -0.167 4.167 27 N -0.312 5.312 28 C -0.058 4.058 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.251 0.749 42 H 0.244 0.756 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.024 0.976 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.012 0.988 50 H 0.082 0.918 51 H 0.094 0.906 52 H 0.089 0.911 53 H 0.161 0.839 54 H 0.092 0.908 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.988 6.650 -12.720 32.348 hybrid contribution 0.175 0.109 0.336 0.394 sum -28.813 6.760 -12.385 32.082 Atomic orbital electron populations 1.21768 0.93685 1.02003 1.01943 1.21275 0.96528 0.95855 0.96659 1.21904 1.00736 0.95396 1.02037 1.21590 0.94273 1.00692 0.97487 1.22196 0.96849 1.01379 0.98409 1.21685 0.91706 0.99236 0.89464 0.89055 1.21204 0.93871 0.97963 0.84596 1.44785 1.04191 1.68007 1.20698 1.16205 0.83398 0.78422 0.82299 1.90886 1.53618 1.58540 1.49417 1.45109 1.08087 1.67430 1.17547 1.20451 0.79764 0.96825 0.95283 1.22179 0.96893 0.97627 0.99622 1.20967 0.93787 0.98607 0.84800 1.44336 1.62272 1.23531 1.03034 1.19491 1.23248 0.89423 1.07296 0.91502 1.25833 0.98195 0.98015 1.02512 1.70184 1.42881 1.17278 1.27797 0.85305 0.77953 0.78572 0.78369 1.20315 1.22059 1.20127 1.20574 0.89230 0.87215 0.97761 1.22251 0.98589 1.02054 0.93778 1.60657 1.07929 1.21946 1.40661 1.22078 0.86593 1.00681 0.96413 0.92321 0.92730 0.92362 0.92984 0.92591 0.92369 0.91654 0.91577 0.91596 0.90860 0.92215 0.93156 0.74929 0.75553 0.92867 0.91594 0.92490 0.97613 0.92415 0.94016 0.98792 0.91775 0.90605 0.91140 0.83853 0.90774 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.48 71.98 0.61 -0.35 16 2 C -0.10 -0.81 0.77 -52.10 -0.04 -0.85 16 3 C -0.14 -1.24 7.87 71.98 0.57 -0.67 16 4 C -0.10 -0.88 4.80 30.70 0.15 -0.73 16 5 C -0.15 -1.50 5.00 30.65 0.15 -1.35 16 6 C 0.09 1.04 2.58 44.94 0.12 1.16 16 7 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 8 C 0.15 2.70 5.32 86.38 0.46 3.15 16 9 N -0.72 -14.84 5.39 -478.54 -2.58 -17.42 16 10 C 0.70 20.89 8.53 179.05 1.53 22.42 16 11 O -0.64 -25.55 16.00 -3.99 -0.06 -25.62 16 12 N -0.73 -20.26 5.08 -457.68 -2.33 -22.59 16 13 C 0.18 6.50 2.42 45.02 0.11 6.60 16 14 C -0.12 -4.59 5.65 30.67 0.17 -4.42 16 15 C 0.14 6.48 6.52 86.36 0.56 7.04 16 16 N -0.61 -31.33 2.99 -699.09 -2.09 -33.43 16 17 C -0.26 -14.72 9.58 84.03 0.81 -13.91 16 18 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 19 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 20 N -0.94 -55.70 11.20 21.65 0.24 -55.46 16 21 Si 0.97 44.86 29.59 68.60 2.03 46.89 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 C 0.18 8.70 5.30 86.36 0.46 9.16 16 26 C -0.13 -4.65 5.55 30.67 0.17 -4.48 16 27 N -0.68 -7.46 5.87 -491.68 -2.89 -10.34 16 28 C 0.07 0.63 5.34 86.32 0.46 1.10 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.05 0.50 5.12 -2.39 -0.01 0.49 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 0.73 6.58 -2.39 -0.02 0.71 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.41 6.59 8.15 -92.71 -0.76 5.83 16 42 H 0.41 8.68 8.62 -92.71 -0.80 7.88 16 43 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 44 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.06 2.50 7.93 -2.39 -0.02 2.49 16 48 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 49 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 50 H 0.06 3.47 6.06 -2.39 -0.01 3.46 16 51 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 52 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 53 H 0.34 4.06 7.08 -89.69 -0.64 3.43 16 54 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 55 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -69.06 414.09 -2.29 -71.36 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -1.31 Total: 25.13 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.70 Total: 21.48 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -9.64 Total: -139.23 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.06 Total: -25.62 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.06 -2.29 -71.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891524880.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.128 kcal (2) G-P(sol) polarization free energy of solvation -69.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds