Wall clock time and date at job start Tue Mar 31 2020 23:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.50252 * 2 1 4 4 C 1.53115 * 109.50303 * 120.07889 * 2 1 3 5 5 C 1.53109 * 109.16092 * 177.59339 * 4 2 1 6 6 C 1.53032 * 109.28150 * 302.34618 * 5 4 2 7 7 H 1.08998 * 109.46401 * 299.17642 * 6 5 4 8 8 C 1.53000 * 109.46455 * 179.19585 * 6 5 4 9 9 N 1.46505 * 109.47113 * 185.00339 * 8 6 5 10 10 C 1.34776 * 119.99805 * 180.02562 * 9 8 6 11 11 O 1.21579 * 120.00330 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99827 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00111 * 179.97438 * 12 10 9 14 14 C 1.53033 * 109.46151 * 275.02692 * 13 12 10 15 15 C 1.53196 * 109.31473 * 178.59899 * 14 13 12 16 16 N 1.46934 * 108.76301 * 54.65679 * 15 14 13 17 17 C 1.36929 * 120.63214 * 126.36345 * 16 15 14 18 18 H 1.08003 * 119.99974 * 207.69894 * 17 16 15 19 19 C 1.38819 * 120.00117 * 27.69839 * 17 16 15 20 20 N 1.31623 * 119.99778 * 17.35207 * 19 17 16 21 21 Si 1.86797 * 120.00064 * 197.34960 * 19 17 16 22 22 H 1.48503 * 109.46990 * 60.00301 * 21 19 17 23 23 H 1.48496 * 109.46882 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47327 * 300.00081 * 21 19 17 25 25 C 1.46929 * 118.73465 * 306.38131 * 16 15 14 26 26 C 1.53038 * 109.45951 * 154.96871 * 13 12 10 27 27 N 1.46850 * 109.52215 * 59.17750 * 6 5 4 28 28 C 1.46849 * 111.19926 * 298.25908 * 27 6 5 29 29 H 1.09000 * 109.46973 * 299.92225 * 1 2 3 30 30 H 1.08998 * 109.46889 * 59.91863 * 1 2 3 31 31 H 1.08996 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47400 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47347 * 300.08146 * 3 2 1 34 34 H 1.09001 * 109.47211 * 60.08069 * 3 2 1 35 35 H 1.09007 * 109.52396 * 57.68736 * 4 2 1 36 36 H 1.09003 * 109.57474 * 297.53392 * 4 2 1 37 37 H 1.09002 * 109.50491 * 182.40195 * 5 4 2 38 38 H 1.09002 * 109.53571 * 62.30962 * 5 4 2 39 39 H 1.08997 * 109.47232 * 64.99844 * 8 6 5 40 40 H 1.09001 * 109.47013 * 304.99865 * 8 6 5 41 41 H 0.97000 * 119.99886 * 0.26777 * 9 8 6 42 42 H 0.97005 * 120.00151 * 359.97438 * 12 10 9 43 43 H 1.09000 * 109.45770 * 35.00342 * 13 12 10 44 44 H 1.09002 * 109.50125 * 298.56401 * 14 13 12 45 45 H 1.08997 * 109.49939 * 58.66148 * 14 13 12 46 46 H 1.08993 * 109.60023 * 294.86889 * 15 14 13 47 47 H 1.08998 * 109.58745 * 174.43673 * 15 14 13 48 48 H 0.96998 * 119.99580 * 180.02562 * 20 19 17 49 49 H 1.08992 * 109.58914 * 293.82387 * 25 16 15 50 50 H 1.09002 * 109.58282 * 173.39760 * 25 16 15 51 51 H 1.08998 * 109.50304 * 301.33881 * 26 13 12 52 52 H 1.09006 * 109.49943 * 61.40847 * 26 13 12 53 53 H 1.00896 * 111.00065 * 62.35815 * 27 6 5 54 54 H 1.08996 * 109.45879 * 301.72617 * 28 27 6 55 55 H 1.08996 * 109.46153 * 181.75777 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0413 -0.7234 1.2489 5 6 3.5711 -0.7716 1.2110 6 6 4.0229 -1.4730 -0.0719 7 1 3.6373 -2.4924 -0.0836 8 6 5.5517 -1.5057 -0.1238 9 7 5.9849 -2.0690 -1.4050 10 6 7.2991 -2.1963 -1.6752 11 8 8.1252 -1.8433 -0.8560 12 7 7.6977 -2.7150 -2.8536 13 6 9.1262 -2.8529 -3.1476 14 6 9.6598 -1.5350 -3.7135 15 6 11.1610 -1.6718 -3.9869 16 7 11.3785 -2.8346 -4.8585 17 6 12.0812 -2.7089 -6.0270 18 1 11.8805 -3.3760 -6.8523 19 6 13.0516 -1.7240 -6.1509 20 7 13.5405 -1.1430 -5.0758 21 14 13.6636 -1.2234 -7.8433 22 1 12.5266 -0.7101 -8.6489 23 1 14.6906 -0.1600 -7.7036 24 1 14.2596 -2.4017 -8.5227 25 6 10.8274 -4.1347 -4.4525 26 6 9.3300 -3.9700 -4.1735 27 7 3.5092 -0.7425 -1.2376 28 6 2.0409 -0.7238 -1.2478 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1309 1.4416 -0.0005 33 1 1.6766 1.9567 -0.8892 34 1 1.6790 1.9558 0.8907 35 1 1.6452 -1.7387 1.2696 36 1 1.7157 -0.1873 2.1404 37 1 3.9395 -1.3227 2.0762 38 1 3.9684 0.2433 1.2300 39 1 5.9298 -2.1231 0.6910 40 1 5.9404 -0.4924 -0.0225 41 1 5.3258 -2.3470 -2.0602 42 1 7.0386 -2.9970 -3.5071 43 1 9.6633 -3.0987 -2.2316 44 1 9.1404 -1.3012 -4.6429 45 1 9.4931 -0.7352 -2.9920 46 1 11.6923 -1.8158 -3.0462 47 1 11.5260 -0.7715 -4.4810 48 1 14.2183 -0.4545 -5.1624 49 1 11.3315 -4.4794 -3.5497 50 1 10.9723 -4.8593 -5.2538 51 1 8.9286 -4.9036 -3.7795 52 1 8.8133 -3.7134 -5.0984 53 1 3.8830 0.1941 -1.2709 54 1 1.6648 -1.7468 -1.2539 55 1 1.6905 -0.2030 -2.1389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891524882.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:22 Heat of formation + Delta-G solvation = -50.413031 kcal Electronic energy + Delta-G solvation = -30197.131388 eV Core-core repulsion = 26267.420381 eV Total energy + Delta-G solvation = -3929.711008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26839 -40.62087 -39.05818 -36.55515 -35.84985 -34.28824 -33.62767 -32.54205 -31.70138 -31.13961 -28.85461 -28.25825 -26.83451 -25.47938 -24.34927 -23.87181 -23.42977 -22.11859 -21.65275 -21.01189 -19.72894 -19.24321 -18.64149 -17.49946 -16.78245 -16.69466 -16.44373 -16.00073 -15.85738 -15.76814 -15.53461 -15.32969 -15.13614 -14.83043 -14.70882 -14.65908 -14.44905 -14.07810 -13.96273 -13.46306 -13.19489 -13.14987 -12.98368 -12.86951 -12.69827 -12.62268 -12.54202 -12.42518 -12.35679 -12.15349 -12.09585 -12.05322 -11.88371 -11.82904 -11.50540 -11.39406 -11.30451 -11.19386 -11.12011 -10.55438 -10.22418 -9.63232 -9.24012 -8.69888 -7.85264 -5.31146 1.48539 1.51608 1.58281 1.79877 2.26896 2.53465 3.20497 3.29820 3.42853 3.68525 3.71912 3.78024 3.90713 3.92234 4.03786 4.11943 4.13893 4.28182 4.38263 4.45351 4.50895 4.52280 4.64046 4.69265 4.70386 4.77419 4.81241 4.83433 4.87808 4.92189 4.95153 4.96791 5.06252 5.08587 5.09810 5.12077 5.14212 5.16368 5.22418 5.34731 5.36571 5.39788 5.48319 5.49111 5.60586 5.65722 5.68035 5.71819 6.09943 6.16645 6.40272 6.42675 7.14959 7.25692 7.72038 7.86402 8.39480 9.21693 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023401 B = 0.001881 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.223122 B =14883.475928 C =15218.667069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.102 4.102 5 C -0.149 4.149 6 C 0.091 3.909 7 H 0.094 0.906 8 C 0.148 3.852 9 N -0.719 5.719 10 C 0.695 3.305 11 O -0.644 6.644 12 N -0.726 5.726 13 C 0.182 3.818 14 C -0.129 4.129 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.074 0.926 19 C -0.057 4.057 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.277 1.277 23 H -0.298 1.298 24 H -0.272 1.272 25 C 0.141 3.859 26 C -0.120 4.120 27 N -0.683 5.683 28 C 0.072 3.928 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.414 0.586 42 H 0.410 0.590 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.041 0.959 46 H -0.012 1.012 47 H 0.055 0.945 48 H 0.249 0.751 49 H 0.011 0.989 50 H 0.069 0.931 51 H 0.091 0.909 52 H 0.075 0.925 53 H 0.341 0.659 54 H 0.076 0.924 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.161 -0.733 10.261 32.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.140 4.140 5 C -0.189 4.189 6 C -0.020 4.020 7 H 0.112 0.888 8 C 0.023 3.977 9 N -0.376 5.376 10 C 0.395 3.605 11 O -0.526 6.526 12 N -0.381 5.381 13 C 0.076 3.924 14 C -0.170 4.170 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.092 0.908 19 C -0.252 4.252 20 N -0.585 5.585 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.198 1.198 25 C 0.015 3.985 26 C -0.160 4.160 27 N -0.313 5.313 28 C -0.058 4.058 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.251 0.749 42 H 0.246 0.754 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.006 0.994 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.029 0.971 50 H 0.087 0.913 51 H 0.109 0.891 52 H 0.094 0.906 53 H 0.160 0.840 54 H 0.094 0.906 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -30.250 -0.878 10.566 32.054 hybrid contribution 0.312 1.157 -0.229 1.220 sum -29.938 0.280 10.337 31.673 Atomic orbital electron populations 1.21766 0.93612 1.02062 1.01927 1.21256 0.96574 0.95759 0.96706 1.21910 1.00686 0.95531 1.02016 1.21570 0.94195 1.00771 0.97458 1.22199 0.96912 1.01317 0.98470 1.21683 0.91589 0.99315 0.89410 0.88794 1.21206 0.93970 0.97849 0.84679 1.44767 1.04151 1.68054 1.20628 1.16242 0.83396 0.78532 0.82311 1.90897 1.53697 1.58190 1.49834 1.45078 1.08079 1.67470 1.17429 1.20466 0.79649 0.94972 0.97302 1.22309 0.97808 0.97384 0.99452 1.20473 0.90905 0.91455 0.91581 1.44345 1.62075 1.03942 1.22876 1.19545 1.12363 1.16216 0.90990 0.90795 1.25889 0.97135 1.01783 1.00343 1.70216 1.30165 1.29235 1.28887 0.85295 0.77395 0.77599 0.79884 1.20259 1.22441 1.19793 1.21054 0.92060 0.87715 0.97659 1.22132 0.97771 0.97679 0.98387 1.60664 1.07985 1.21962 1.40644 1.22081 0.86534 1.00753 0.96383 0.92768 0.92336 0.92236 0.93103 0.92393 0.92612 0.91409 0.91699 0.90807 0.91790 0.92117 0.93494 0.74855 0.75408 0.92868 0.92177 0.94005 0.99390 0.92676 0.94217 0.97062 0.91281 0.89100 0.90640 0.83954 0.90573 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.48 71.98 0.61 -0.37 16 2 C -0.10 -0.85 0.77 -52.13 -0.04 -0.89 16 3 C -0.14 -1.37 7.87 71.98 0.57 -0.80 16 4 C -0.10 -0.90 4.79 30.67 0.15 -0.76 16 5 C -0.15 -1.59 5.00 30.64 0.15 -1.44 16 6 C 0.09 1.09 2.58 44.94 0.12 1.20 16 7 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 8 C 0.15 2.80 5.32 86.38 0.46 3.26 16 9 N -0.72 -15.17 5.39 -478.53 -2.58 -17.76 16 10 C 0.70 21.41 8.53 179.05 1.53 22.94 16 11 O -0.64 -26.71 16.00 -3.96 -0.06 -26.77 16 12 N -0.73 -20.18 5.08 -457.71 -2.33 -22.50 16 13 C 0.18 6.46 2.42 45.02 0.11 6.57 16 14 C -0.13 -5.43 5.65 30.67 0.17 -5.26 16 15 C 0.18 9.51 5.31 86.36 0.46 9.97 16 16 N -0.61 -31.27 2.99 -699.07 -2.09 -33.36 16 17 C -0.26 -14.46 9.58 84.04 0.81 -13.66 16 18 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 19 C -0.06 -3.23 4.91 84.86 0.42 -2.81 16 20 N -0.94 -57.66 11.19 21.65 0.24 -57.42 16 21 Si 0.97 45.49 29.59 68.60 2.03 47.52 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 C 0.14 5.79 6.52 86.36 0.56 6.35 16 26 C -0.12 -3.80 5.55 30.67 0.17 -3.63 16 27 N -0.68 -7.88 5.87 -491.69 -2.89 -10.77 16 28 C 0.07 0.66 5.34 86.32 0.46 1.12 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.55 5.13 -2.38 -0.01 0.54 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.77 6.59 -2.39 -0.02 0.75 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.41 6.62 8.15 -92.71 -0.76 5.87 16 42 H 0.41 8.33 8.62 -92.70 -0.80 7.53 16 43 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 44 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 46 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 47 H 0.05 3.22 6.04 -2.39 -0.01 3.21 16 48 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 49 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 51 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 53 H 0.34 4.43 7.08 -89.70 -0.64 3.80 16 54 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 55 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -72.04 414.06 -2.29 -74.33 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -1.31 Total: 24.94 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 6.70 Total: 21.79 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -9.64 Total: -141.81 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.06 Total: -26.77 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.04 -2.29 -74.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891524882.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.916 kcal (2) G-P(sol) polarization free energy of solvation -72.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds