Wall clock time and date at job start Tue Mar 31 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 108.89848 * 2 1 4 4 C 1.54066 * 108.91774 * 118.65621 * 2 1 3 5 5 N 1.44267 * 111.97709 * 79.64095 * 4 2 1 6 6 C 1.47789 * 109.46097 * 96.44195 * 5 4 2 7 7 C 1.45865 * 112.92751 * 276.73058 * 6 5 4 8 8 C 1.54515 * 111.58534 * 61.31747 * 7 6 5 9 9 H 1.09000 * 109.56768 * 42.76466 * 8 7 6 10 10 N 1.46501 * 109.57333 * 163.01398 * 8 7 6 11 11 C 1.34774 * 120.00126 * 274.75368 * 10 8 7 12 12 O 1.21584 * 119.99827 * 359.97438 * 11 10 8 13 13 N 1.34772 * 119.99987 * 179.72640 * 11 10 8 14 14 C 1.46495 * 120.00062 * 180.27284 * 13 11 10 15 15 C 1.53040 * 109.46136 * 275.06655 * 14 13 11 16 16 C 1.53192 * 109.31380 * 178.61375 * 15 14 13 17 17 N 1.46921 * 108.77690 * 54.63369 * 16 15 14 18 18 C 1.36940 * 120.63129 * 126.41151 * 17 16 15 19 19 H 1.08002 * 119.99963 * 207.66188 * 18 17 16 20 20 C 1.38811 * 119.99886 * 27.66064 * 18 17 16 21 21 N 1.31621 * 119.99793 * 17.37810 * 20 18 17 22 22 Si 1.86801 * 120.00049 * 197.37485 * 20 18 17 23 23 H 1.48498 * 109.47121 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46666 * 120.00138 * 22 20 18 25 25 H 1.48500 * 109.47226 * 240.00110 * 22 20 18 26 26 C 1.46931 * 118.74058 * 306.39472 * 17 16 15 27 27 C 1.53043 * 109.46227 * 154.99633 * 14 13 11 28 28 C 1.50459 * 108.96270 * 282.89257 * 8 7 6 29 29 H 1.09005 * 109.46762 * 301.34303 * 1 2 3 30 30 H 1.08994 * 109.46814 * 61.33970 * 1 2 3 31 31 H 1.08996 * 109.47093 * 181.34533 * 1 2 3 32 32 H 1.09000 * 109.47217 * 178.65628 * 3 2 1 33 33 H 1.08999 * 109.46823 * 298.65847 * 3 2 1 34 34 H 1.09004 * 109.46982 * 58.65846 * 3 2 1 35 35 H 1.09003 * 108.98243 * 318.99663 * 4 2 1 36 36 H 1.09002 * 108.98151 * 200.28522 * 4 2 1 37 37 H 1.00903 * 111.00144 * 219.31951 * 5 4 2 38 38 H 1.09000 * 108.79654 * 155.84165 * 6 5 4 39 39 H 1.09001 * 108.79413 * 37.61560 * 6 5 4 40 40 H 1.09004 * 109.05777 * 300.77963 * 7 6 5 41 41 H 1.08991 * 109.00559 * 181.82646 * 7 6 5 42 42 H 0.97005 * 119.99736 * 94.75171 * 10 8 7 43 43 H 0.96995 * 119.99916 * 0.27092 * 13 11 10 44 44 H 1.09000 * 109.46220 * 35.02770 * 14 13 11 45 45 H 1.09000 * 109.49848 * 298.56348 * 15 14 13 46 46 H 1.09001 * 109.49392 * 58.66724 * 15 14 13 47 47 H 1.09008 * 109.58818 * 294.84943 * 16 15 14 48 48 H 1.08999 * 109.59032 * 174.42413 * 16 15 14 49 49 H 0.97005 * 119.99754 * 179.97438 * 21 20 18 50 50 H 1.09004 * 109.58314 * 293.81717 * 26 17 16 51 51 H 1.08997 * 109.70491 * 173.46337 * 26 17 16 52 52 H 1.08994 * 109.49798 * 301.33980 * 27 14 13 53 53 H 1.09006 * 109.49385 * 61.40236 * 27 14 13 54 54 H 1.09005 * 108.77211 * 213.00645 * 28 8 7 55 55 H 1.09004 * 108.77312 * 331.16832 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0256 1.4475 0.0000 4 6 2.0295 -0.6989 1.2789 5 7 1.9770 -2.1361 1.1644 6 6 3.3046 -2.6469 0.7634 7 6 3.5274 -2.5814 -0.6766 8 6 3.4699 -1.1269 -1.1951 9 1 4.0070 -0.4730 -0.5081 10 7 4.0844 -1.0546 -2.5231 11 6 5.4181 -0.9009 -2.6410 12 8 6.1113 -0.8218 -1.6452 13 7 5.9840 -0.8400 -3.8626 14 6 7.4344 -0.6789 -3.9908 15 6 7.7915 0.8071 -3.9107 16 6 9.3116 0.9690 -4.0103 17 7 9.7792 0.3011 -5.2325 18 6 10.5410 0.9761 -6.1487 19 1 10.5146 0.6888 -7.1894 20 6 11.3471 2.0295 -5.7396 21 7 11.6519 2.1692 -4.4669 22 14 11.9994 3.2488 -6.9956 23 1 11.5151 2.8730 -8.3481 24 1 11.5168 4.6122 -6.6586 25 1 13.4841 3.2308 -6.9782 26 6 9.4144 -1.1050 -5.4529 27 6 7.8932 -1.2437 -5.3371 28 6 2.0312 -0.6951 -1.2812 29 1 -0.3633 0.5346 0.8778 30 1 -0.3633 0.4929 -0.9017 31 1 -0.3633 -1.0273 0.0241 32 1 3.1153 1.4585 0.0241 33 1 1.6770 1.9509 -0.9018 34 1 1.6376 1.9644 0.8777 35 1 1.4086 -0.3873 2.1189 36 1 3.0591 -0.3959 1.4695 37 1 1.6739 -2.5570 2.0299 38 1 3.3936 -3.6844 1.0856 39 1 4.0733 -2.0588 1.2647 40 1 2.7619 -3.1700 -1.1824 41 1 4.5070 -3.0017 -0.9037 42 1 3.5312 -1.1174 -3.3175 43 1 5.4310 -0.9027 -4.6569 44 1 7.9322 -1.2158 -3.1833 45 1 7.3142 1.3408 -4.7326 46 1 7.4438 1.2141 -2.9612 47 1 9.7854 0.5134 -3.1408 48 1 9.5642 2.0285 -4.0534 49 1 12.2156 2.9052 -4.1811 50 1 9.8966 -1.7298 -4.7010 51 1 9.7351 -1.4164 -6.4470 52 1 7.6178 -2.2962 -5.4030 53 1 7.4144 -0.6911 -6.1456 54 1 1.9209 -0.0078 -2.1200 55 1 1.4119 -1.5728 -1.4663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891525065.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:40 Heat of formation + Delta-G solvation = -41.561980 kcal Electronic energy + Delta-G solvation = -30961.157905 eV Core-core repulsion = 27031.830708 eV Total energy + Delta-G solvation = -3929.327197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48584 -40.28187 -38.98903 -36.26447 -35.84310 -35.75929 -33.97028 -32.45597 -31.64144 -30.87754 -28.96808 -28.08132 -26.86922 -26.09818 -24.34233 -23.89612 -23.34929 -21.89714 -21.51756 -21.06696 -19.81290 -19.00249 -18.55970 -17.92909 -17.16229 -16.77431 -16.53968 -16.32990 -15.84315 -15.50845 -15.45501 -15.35798 -15.17778 -15.11796 -14.78479 -14.66881 -14.26977 -14.02535 -13.94787 -13.48778 -13.18837 -13.13275 -13.03795 -13.00659 -12.66344 -12.59137 -12.46863 -12.38598 -12.20955 -12.10813 -12.01402 -11.86562 -11.74286 -11.64027 -11.53365 -11.39668 -11.36643 -11.30786 -11.10088 -10.59430 -10.23367 -9.71814 -9.41715 -8.72472 -7.87558 -5.33551 1.46649 1.48292 1.59306 1.73568 2.21593 2.51459 3.19821 3.25887 3.33475 3.66696 3.72221 3.87227 3.88136 3.90906 4.10092 4.13422 4.19624 4.35077 4.39334 4.42830 4.47919 4.56114 4.66104 4.67159 4.71438 4.74261 4.80496 4.81225 4.85682 4.87966 5.03256 5.04437 5.05137 5.09052 5.12716 5.15602 5.18619 5.19509 5.28552 5.31995 5.38939 5.42459 5.46032 5.56759 5.62350 5.64394 5.67710 5.69296 6.04306 6.11500 6.38259 6.56957 7.12759 7.19612 7.67496 7.84007 8.36910 9.19755 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.002202 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.679615 B =12712.843483 C =13177.185510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.051 4.051 3 C -0.146 4.146 4 C 0.064 3.936 5 N -0.672 5.672 6 C 0.063 3.937 7 C -0.118 4.118 8 C 0.171 3.829 9 H 0.052 0.948 10 N -0.728 5.728 11 C 0.698 3.302 12 O -0.638 6.638 13 N -0.726 5.726 14 C 0.182 3.818 15 C -0.129 4.129 16 C 0.183 3.817 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.075 0.925 20 C -0.057 4.057 21 N -0.940 5.940 22 Si 0.969 3.031 23 H -0.261 1.261 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.141 3.859 27 C -0.120 4.120 28 C -0.099 4.099 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.021 0.979 37 H 0.356 0.644 38 H 0.081 0.919 39 H 0.018 0.982 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.410 0.590 43 H 0.410 0.590 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.040 0.960 47 H -0.013 1.013 48 H 0.055 0.945 49 H 0.249 0.751 50 H 0.011 0.989 51 H 0.069 0.931 52 H 0.091 0.909 53 H 0.076 0.924 54 H 0.068 0.932 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.634 -9.233 7.121 29.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.052 4.052 3 C -0.204 4.204 4 C -0.067 4.067 5 N -0.303 5.303 6 C -0.066 4.066 7 C -0.157 4.157 8 C 0.066 3.934 9 H 0.070 0.930 10 N -0.384 5.384 11 C 0.398 3.602 12 O -0.520 6.520 13 N -0.381 5.381 14 C 0.076 3.924 15 C -0.169 4.169 16 C 0.057 3.943 17 N -0.333 5.333 18 C -0.389 4.389 19 H 0.093 0.907 20 C -0.252 4.252 21 N -0.586 5.586 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.219 1.219 25 H -0.221 1.221 26 C 0.015 3.985 27 C -0.159 4.159 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.040 0.960 37 H 0.175 0.825 38 H 0.099 0.901 39 H 0.036 0.964 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.246 0.754 43 H 0.246 0.754 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.005 0.995 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.029 0.971 51 H 0.088 0.912 52 H 0.109 0.891 53 H 0.094 0.906 54 H 0.086 0.914 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -27.182 -9.078 7.425 29.604 hybrid contribution 1.308 1.045 0.057 1.675 sum -25.874 -8.033 7.482 28.106 Atomic orbital electron populations 1.21779 0.92763 1.02290 1.01725 1.20885 0.96711 0.93730 0.93903 1.21975 0.99895 0.96099 1.02396 1.21840 0.99161 0.88377 0.97290 1.59839 1.26510 1.05443 1.38486 1.20710 0.89519 1.00595 0.95824 1.20910 1.01192 0.96650 0.96937 1.20497 0.94007 0.96313 0.82619 0.92972 1.45140 1.04711 1.78571 1.09943 1.16206 0.82814 0.77418 0.83741 1.90899 1.63078 1.59896 1.38078 1.45105 1.08139 1.78256 1.06602 1.20471 0.78884 0.94856 0.98159 1.22309 0.97802 0.97010 0.99825 1.20458 0.89572 0.97522 0.86777 1.44370 1.59156 1.07737 1.22042 1.19615 1.17416 1.12246 0.89604 0.90719 1.25889 0.98285 1.03264 0.97752 1.70229 1.39781 1.32211 1.16372 0.85173 0.77149 0.78647 0.79282 1.18508 1.21948 1.22073 1.21049 0.93213 0.84939 0.99296 1.22126 0.96997 1.01523 0.95273 1.21494 0.92992 1.01379 0.97865 0.92379 0.92664 0.91820 0.94869 0.92078 0.91805 0.90493 0.96022 0.82518 0.90084 0.96421 0.89965 0.93664 0.75366 0.75355 0.92910 0.92104 0.94104 0.99479 0.92694 0.94218 0.97130 0.91228 0.89078 0.90566 0.91362 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.19 71.98 0.59 -0.79 16 2 C -0.05 -0.71 0.68 -51.43 -0.04 -0.75 16 3 C -0.15 -2.32 8.14 71.98 0.59 -1.73 16 4 C 0.06 0.91 4.64 87.16 0.40 1.32 16 5 N -0.67 -8.72 6.41 -527.73 -3.38 -12.10 16 6 C 0.06 1.06 5.80 83.94 0.49 1.55 16 7 C -0.12 -2.28 5.14 28.92 0.15 -2.13 16 8 C 0.17 3.54 2.07 44.68 0.09 3.64 16 9 H 0.05 1.46 5.85 -2.39 -0.01 1.45 16 10 N -0.73 -15.41 4.99 -459.30 -2.29 -17.71 16 11 C 0.70 21.29 8.44 179.06 1.51 22.81 16 12 O -0.64 -26.31 15.67 -3.98 -0.06 -26.37 16 13 N -0.73 -19.79 5.08 -457.70 -2.33 -22.12 16 14 C 0.18 6.40 2.41 45.02 0.11 6.51 16 15 C -0.13 -5.40 5.65 30.67 0.17 -5.22 16 16 C 0.18 9.53 5.31 86.36 0.46 9.99 16 17 N -0.61 -31.20 3.00 -699.09 -2.09 -33.29 16 18 C -0.26 -14.29 9.59 84.03 0.81 -13.48 16 19 H 0.08 3.93 7.89 -2.91 -0.02 3.90 16 20 C -0.06 -3.25 4.91 84.86 0.42 -2.83 16 21 N -0.94 -57.67 11.19 21.65 0.24 -57.43 16 22 Si 0.97 45.40 29.59 68.60 2.03 47.43 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 26 C 0.14 5.75 6.51 86.36 0.56 6.31 16 27 C -0.12 -3.74 5.55 30.67 0.17 -3.57 16 28 C -0.10 -1.48 3.79 30.16 0.11 -1.37 16 29 H 0.06 0.56 8.12 -2.38 -0.02 0.54 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.03 0.68 7.40 -2.39 -0.02 0.66 16 33 H 0.06 0.91 8.06 -2.39 -0.02 0.90 16 34 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.08 0.87 7.96 -2.39 -0.02 0.85 16 36 H 0.02 0.41 6.33 -2.39 -0.02 0.40 16 37 H 0.36 3.26 8.89 -89.69 -0.80 2.46 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.02 0.37 7.24 -2.39 -0.02 0.36 16 40 H 0.08 1.35 7.60 -2.39 -0.02 1.33 16 41 H 0.04 1.11 8.07 -2.39 -0.02 1.09 16 42 H 0.41 5.78 8.54 -92.70 -0.79 4.99 16 43 H 0.41 7.93 8.62 -92.71 -0.80 7.13 16 44 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 45 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 47 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 48 H 0.05 3.21 6.04 -2.39 -0.01 3.19 16 49 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 50 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 51 H 0.07 2.66 7.94 -2.39 -0.02 2.64 16 52 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 53 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 54 H 0.07 0.96 7.66 -2.38 -0.02 0.94 16 55 H 0.08 1.12 7.22 -2.39 -0.02 1.10 16 Total: -1.00 -73.73 410.79 -2.79 -76.52 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -1.50 Total: 24.81 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 6.59 Total: 20.25 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -9.85 Total: -142.65 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.06 Total: -26.37 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -73.73 -2.79 -76.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891525065.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.962 kcal (2) G-P(sol) polarization free energy of solvation -73.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds