Wall clock time and date at job start Tue Mar 31 2020 23:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.50515 * 2 1 4 4 C 1.53117 * 109.50856 * 120.08379 * 2 1 3 5 5 C 1.53120 * 109.15846 * 62.28050 * 4 2 1 6 6 C 1.53037 * 109.27579 * 57.66103 * 5 4 2 7 7 H 1.08999 * 109.46757 * 60.83422 * 6 5 4 8 8 C 1.53005 * 109.46142 * 180.81218 * 6 5 4 9 9 N 1.46498 * 109.47040 * 174.99984 * 8 6 5 10 10 C 1.34777 * 120.00407 * 180.02562 * 9 8 6 11 11 O 1.21597 * 119.99395 * 354.85681 * 10 9 8 12 12 N 1.34769 * 120.00520 * 174.85235 * 10 9 8 13 13 C 1.47080 * 120.88312 * 184.71240 * 12 10 9 14 14 C 1.53695 * 108.27902 * 128.75864 * 13 12 10 15 15 N 1.46907 * 109.25518 * 54.07868 * 14 13 12 16 16 C 1.46901 * 110.99758 * 172.60916 * 15 14 13 17 17 C 1.50704 * 109.47154 * 59.44569 * 16 15 14 18 18 H 1.07994 * 119.99642 * 355.05129 * 17 16 15 19 19 C 1.37874 * 119.99966 * 175.05339 * 17 16 15 20 20 N 1.31516 * 120.00018 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00031 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46989 * 59.99787 * 21 19 17 23 23 H 1.48496 * 109.47274 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47250 * 300.00242 * 21 19 17 25 25 C 1.46897 * 111.27273 * 296.76262 * 15 14 13 26 26 C 1.47079 * 120.87972 * 4.99715 * 12 10 9 27 27 N 1.46845 * 109.52440 * 300.81652 * 6 5 4 28 28 C 1.46935 * 111.21856 * 61.74334 * 27 6 5 29 29 H 1.09000 * 109.47192 * 59.99694 * 1 2 3 30 30 H 1.09006 * 109.47015 * 299.99425 * 1 2 3 31 31 H 1.09000 * 109.47427 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46369 * 60.00194 * 3 2 1 33 33 H 1.09002 * 109.47135 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46996 * 300.00402 * 3 2 1 35 35 H 1.08991 * 109.52914 * 182.19120 * 4 2 1 36 36 H 1.09002 * 109.52219 * 302.32191 * 4 2 1 37 37 H 1.09004 * 109.50315 * 177.59985 * 5 4 2 38 38 H 1.08996 * 109.50993 * 297.72068 * 5 4 2 39 39 H 1.08993 * 109.47162 * 294.99881 * 8 6 5 40 40 H 1.08996 * 109.47056 * 54.99912 * 8 6 5 41 41 H 0.97001 * 120.00084 * 359.97438 * 9 8 6 42 42 H 1.09003 * 109.63084 * 248.52438 * 13 12 10 43 43 H 1.08999 * 109.62692 * 9.10492 * 13 12 10 44 44 H 1.09007 * 109.64640 * 294.08410 * 14 13 12 45 45 H 1.08994 * 109.42741 * 173.94903 * 14 13 12 46 46 H 1.09002 * 109.47003 * 179.44778 * 16 15 14 47 47 H 1.09007 * 109.47301 * 299.44459 * 16 15 14 48 48 H 0.97000 * 119.99777 * 180.02562 * 20 19 17 49 49 H 1.09006 * 109.49117 * 303.14244 * 25 15 14 50 50 H 1.08999 * 109.49242 * 183.06656 * 25 15 14 51 51 H 1.08996 * 109.62864 * 350.89159 * 26 12 10 52 52 H 1.09002 * 109.63214 * 111.27754 * 26 12 10 53 53 H 1.00900 * 110.99888 * 297.64501 * 27 6 5 54 54 H 1.09003 * 109.51442 * 178.25937 * 28 27 6 55 55 H 1.09000 * 109.44714 * 58.26734 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0413 -0.7235 1.2489 5 6 1.5749 -2.1814 1.2113 6 6 2.0845 -2.8420 -0.0717 7 1 3.1742 -2.8197 -0.0837 8 6 1.6038 -4.2936 -0.1233 9 7 1.9894 -4.8904 -1.4045 10 6 1.6688 -6.1712 -1.6750 11 8 1.1430 -6.8595 -0.8215 12 7 1.9308 -6.6891 -2.8913 13 6 1.4973 -8.0502 -3.2417 14 6 0.7372 -7.9855 -4.5759 15 7 1.5793 -7.3242 -5.5817 16 6 0.9638 -7.3967 -6.9136 17 6 -0.3856 -6.7265 -6.8806 18 1 -0.7843 -6.3613 -5.9458 19 6 -1.1110 -6.5796 -8.0439 20 7 -0.6251 -7.0240 -9.1824 21 14 -2.7832 -5.7482 -8.0032 22 1 -2.6339 -4.3606 -7.4958 23 1 -3.3530 -5.7149 -9.3740 24 1 -3.6919 -6.5076 -7.1072 25 6 1.8624 -5.9321 -5.2077 26 6 2.6633 -5.9104 -3.9014 27 7 1.5675 -2.1138 -1.2374 28 6 2.0409 -0.7229 -1.2484 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6777 1.9562 0.8901 33 1 3.1308 1.4416 -0.0005 34 1 1.6777 1.9563 -0.8900 35 1 3.1305 -0.6898 1.2691 36 1 1.6452 -0.2363 2.1399 37 1 1.9716 -2.7128 2.0765 38 1 0.4857 -2.2158 1.2304 39 1 2.0594 -4.8564 0.6914 40 1 0.5190 -4.3209 -0.0216 41 1 2.4749 -4.3635 -2.0584 42 1 2.3687 -8.6970 -3.3443 43 1 0.8403 -8.4371 -2.4628 44 1 -0.1853 -7.4197 -4.4451 45 1 0.5004 -8.9964 -4.9076 46 1 1.6031 -6.8911 -7.6373 47 1 0.8438 -8.4411 -7.2021 48 1 -1.1353 -6.9203 -10.0008 49 1 0.9242 -5.3950 -5.0681 50 1 2.4417 -5.4539 -5.9976 51 1 2.7775 -4.8820 -3.5590 52 1 3.6460 -6.3535 -4.0637 53 1 0.5598 -2.1529 -1.2703 54 1 1.6669 -0.2180 -2.1391 55 1 3.1308 -0.7105 -1.2548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892378058.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:09 Heat of formation + Delta-G solvation = -50.088201 kcal Electronic energy + Delta-G solvation = -30971.433791 eV Core-core repulsion = 27041.736869 eV Total energy + Delta-G solvation = -3929.696922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46563 -40.68493 -39.09543 -36.52458 -35.97122 -34.43922 -33.95621 -32.55297 -31.91201 -30.02742 -28.74732 -28.26915 -27.04564 -25.55082 -24.58823 -24.34971 -23.76792 -22.15340 -21.97974 -20.44699 -19.70247 -19.22156 -18.32163 -17.37463 -16.84065 -16.80610 -16.47000 -16.11989 -15.97122 -15.85698 -15.66866 -15.47996 -15.24477 -15.00632 -14.80410 -14.65674 -14.53364 -14.08710 -13.68689 -13.57257 -13.38792 -13.16475 -12.96515 -12.92080 -12.86270 -12.70527 -12.52885 -12.45058 -12.41906 -12.34783 -12.22273 -12.14609 -11.93033 -11.86773 -11.82801 -11.61464 -11.30846 -11.19957 -11.11579 -10.60863 -10.16697 -9.51079 -9.23871 -9.00579 -8.16444 -6.35560 1.35459 1.36331 1.44588 1.68738 2.18324 2.36002 2.93904 3.08484 3.28213 3.33627 3.66881 3.77619 3.89988 4.00975 4.05536 4.10040 4.14924 4.24713 4.27693 4.39479 4.44843 4.51513 4.56425 4.62696 4.66151 4.69581 4.76641 4.80458 4.81102 4.88212 4.92424 4.94413 4.96008 5.05678 5.08015 5.09193 5.13440 5.21430 5.21780 5.23570 5.33431 5.35770 5.39575 5.48665 5.51760 5.58638 5.73352 5.97034 6.06726 6.10773 6.24289 6.40776 6.48030 6.84499 7.03270 7.35847 7.59802 8.85560 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.002821 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.972697 B = 9923.057129 C =11496.482705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.136 4.136 4 C -0.102 4.102 5 C -0.147 4.147 6 C 0.089 3.911 7 H 0.095 0.905 8 C 0.148 3.852 9 N -0.724 5.724 10 C 0.701 3.299 11 O -0.640 6.640 12 N -0.628 5.628 13 C 0.145 3.855 14 C 0.056 3.944 15 N -0.535 5.535 16 C 0.201 3.799 17 C -0.557 4.557 18 H 0.050 0.950 19 C 0.016 3.984 20 N -0.923 5.923 21 Si 0.952 3.048 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.275 1.275 25 C 0.053 3.947 26 C 0.128 3.872 27 N -0.687 5.687 28 C 0.071 3.929 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.411 0.589 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.014 0.986 45 H 0.074 0.926 46 H 0.014 0.986 47 H 0.006 0.994 48 H 0.266 0.734 49 H 0.017 0.983 50 H 0.080 0.920 51 H 0.101 0.899 52 H 0.088 0.912 53 H 0.340 0.660 54 H 0.073 0.927 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 16.007 20.927 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.194 4.194 4 C -0.139 4.139 5 C -0.187 4.187 6 C -0.022 4.022 7 H 0.113 0.887 8 C 0.023 3.977 9 N -0.382 5.382 10 C 0.403 3.597 11 O -0.522 6.522 12 N -0.364 5.364 13 C 0.021 3.979 14 C -0.074 4.074 15 N -0.259 5.259 16 C 0.074 3.926 17 C -0.596 4.596 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.562 5.562 21 Si 0.777 3.223 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.200 1.200 25 C -0.077 4.077 26 C 0.005 3.995 27 N -0.317 5.317 28 C -0.058 4.058 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.250 0.750 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.032 0.968 45 H 0.093 0.907 46 H 0.033 0.967 47 H 0.024 0.976 48 H 0.075 0.925 49 H 0.035 0.965 50 H 0.098 0.902 51 H 0.119 0.881 52 H 0.106 0.894 53 H 0.159 0.841 54 H 0.092 0.908 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.235 15.034 20.884 27.340 hybrid contribution -2.406 1.182 -0.138 2.684 sum 6.829 16.216 20.746 27.203 Atomic orbital electron populations 1.21916 0.94883 1.01437 1.01959 1.21244 0.95731 0.96521 0.96715 1.21769 1.01192 0.94525 1.01892 1.21566 1.00957 0.94095 0.97301 1.22187 1.01415 0.96730 0.98352 1.21722 1.00635 0.90417 0.89413 0.88740 1.21244 0.99145 0.92662 0.84626 1.45007 1.62129 1.10179 1.20851 1.16036 0.78971 0.82616 0.82109 1.90842 1.52463 1.61418 1.47515 1.47363 1.59801 1.16888 1.12393 1.21603 0.99242 0.82282 0.94763 1.22317 0.94029 0.99218 0.91808 1.62418 1.45055 1.15481 1.02918 1.19429 0.91836 0.95278 0.86022 1.21920 1.04903 1.39067 0.93721 0.93219 1.25730 1.01490 0.95997 0.95154 1.70037 1.39685 1.47263 0.99250 0.85711 0.80074 0.79210 0.77312 1.19572 1.20432 1.20021 1.22255 0.98382 0.89936 0.97079 1.21839 0.95172 0.96349 0.86141 1.60671 1.15891 1.14168 1.40975 1.22101 1.00558 0.86767 0.96418 0.92745 0.92356 0.93123 0.92561 0.92144 0.92602 0.91299 0.91485 0.90433 0.91813 0.91503 0.93464 0.74959 0.89937 0.90019 0.96761 0.90718 0.96739 0.97614 0.92529 0.96503 0.90160 0.88065 0.89390 0.84075 0.90823 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.87 71.98 0.57 -1.14 16 2 C -0.10 -1.05 0.77 -52.13 -0.04 -1.09 16 3 C -0.14 -1.26 8.48 71.98 0.61 -0.65 16 4 C -0.10 -1.01 4.79 30.67 0.15 -0.86 16 5 C -0.15 -1.69 5.01 30.65 0.15 -1.53 16 6 C 0.09 1.22 2.58 44.94 0.12 1.33 16 7 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 8 C 0.15 2.96 5.32 86.38 0.46 3.42 16 9 N -0.72 -17.27 5.30 -478.54 -2.54 -19.81 16 10 C 0.70 22.60 8.31 179.06 1.49 24.09 16 11 O -0.64 -25.24 15.83 -4.02 -0.06 -25.30 16 12 N -0.63 -19.70 3.00 -835.04 -2.51 -22.21 16 13 C 0.14 4.82 6.61 86.50 0.57 5.39 16 14 C 0.06 2.21 5.17 86.54 0.45 2.65 16 15 N -0.54 -22.34 4.83 -898.84 -4.34 -26.68 16 16 C 0.20 10.37 5.11 85.56 0.44 10.81 16 17 C -0.56 -30.79 7.76 25.60 0.20 -30.59 16 18 H 0.05 2.77 5.88 -2.91 -0.02 2.75 16 19 C 0.02 0.90 5.46 84.65 0.46 1.37 16 20 N -0.92 -54.40 13.29 21.45 0.28 -54.11 16 21 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 25 C 0.05 1.91 5.25 86.38 0.45 2.36 16 26 C 0.13 3.46 6.59 86.35 0.57 4.03 16 27 N -0.69 -10.16 5.87 -491.46 -2.89 -13.04 16 28 C 0.07 0.87 5.35 86.31 0.46 1.33 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.66 5.12 -2.39 -0.01 0.65 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.06 0.82 6.58 -2.39 -0.02 0.80 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.41 8.44 5.63 -92.71 -0.52 7.92 16 42 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.08 2.83 7.09 -2.39 -0.02 2.81 16 44 H 0.01 0.64 6.62 -2.38 -0.02 0.62 16 45 H 0.07 2.95 8.11 -2.39 -0.02 2.93 16 46 H 0.01 0.80 8.07 -2.39 -0.02 0.78 16 47 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 48 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 49 H 0.02 0.69 7.11 -2.38 -0.02 0.68 16 50 H 0.08 2.83 8.06 -2.39 -0.02 2.81 16 51 H 0.10 2.16 5.63 -2.39 -0.01 2.15 16 52 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 53 H 0.34 5.62 7.08 -89.69 -0.63 4.99 16 54 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 55 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -66.97 408.97 -3.21 -70.17 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.28 Total: 23.92 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 7.10 Total: 20.91 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -11.99 Total: -135.85 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.06 Total: -25.30 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -66.97 -3.21 -70.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892378058.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.086 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds