Wall clock time and date at job start Tue Mar 31 2020 23:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.50315 * 2 1 4 4 C 1.53124 * 109.50027 * 120.07659 * 2 1 3 5 5 C 1.53120 * 109.15743 * 177.59335 * 4 2 1 6 6 C 1.53040 * 109.31353 * 302.32702 * 5 4 2 7 7 H 1.08998 * 109.46301 * 299.18379 * 6 5 4 8 8 C 1.52998 * 109.46402 * 179.21027 * 6 5 4 9 9 N 1.46499 * 109.47270 * 184.99739 * 8 6 5 10 10 C 1.34769 * 120.00194 * 180.02562 * 9 8 6 11 11 O 1.21591 * 119.99821 * 354.92348 * 10 9 8 12 12 N 1.34773 * 120.00114 * 174.92316 * 10 9 8 13 13 C 1.47084 * 120.88242 * 184.71931 * 12 10 9 14 14 C 1.53695 * 108.27821 * 128.75306 * 13 12 10 15 15 N 1.46896 * 109.25815 * 54.08302 * 14 13 12 16 16 C 1.46902 * 111.00020 * 172.61032 * 15 14 13 17 17 C 1.50704 * 109.46709 * 294.29788 * 16 15 14 18 18 H 1.07997 * 120.00185 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99797 * 180.02562 * 17 16 15 20 20 N 1.31505 * 120.00197 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99785 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47047 * 90.00597 * 21 19 17 23 23 H 1.48498 * 109.46827 * 210.00266 * 21 19 17 24 24 H 1.48501 * 109.47097 * 330.00320 * 21 19 17 25 25 C 1.46900 * 111.26673 * 296.75711 * 15 14 13 26 26 C 1.47079 * 120.88159 * 4.99107 * 12 10 9 27 27 N 1.46927 * 109.47737 * 59.15705 * 6 5 4 28 28 C 1.46845 * 111.22389 * 298.28385 * 27 6 5 29 29 H 1.09005 * 109.47238 * 299.91942 * 1 2 3 30 30 H 1.08996 * 109.47308 * 59.92592 * 1 2 3 31 31 H 1.09008 * 109.47070 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46922 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47088 * 300.07821 * 3 2 1 34 34 H 1.08999 * 109.47197 * 60.07953 * 3 2 1 35 35 H 1.09003 * 109.52246 * 57.69564 * 4 2 1 36 36 H 1.08994 * 109.52342 * 297.49963 * 4 2 1 37 37 H 1.09004 * 109.50532 * 62.28737 * 5 4 2 38 38 H 1.09001 * 109.50579 * 182.36302 * 5 4 2 39 39 H 1.08999 * 109.47147 * 305.00414 * 8 6 5 40 40 H 1.09004 * 109.46656 * 65.00106 * 8 6 5 41 41 H 0.97003 * 119.99804 * 0.02562 * 9 8 6 42 42 H 1.09001 * 109.62852 * 248.52313 * 13 12 10 43 43 H 1.09000 * 109.62916 * 9.09863 * 13 12 10 44 44 H 1.09003 * 109.64602 * 294.07734 * 14 13 12 45 45 H 1.09006 * 109.44070 * 173.96233 * 14 13 12 46 46 H 1.08993 * 109.47175 * 54.29730 * 16 15 14 47 47 H 1.09001 * 109.46685 * 174.30540 * 16 15 14 48 48 H 0.96998 * 120.00769 * 180.02562 * 20 19 17 49 49 H 1.08998 * 109.49495 * 303.14228 * 25 15 14 50 50 H 1.09002 * 109.49019 * 183.06512 * 25 15 14 51 51 H 1.08994 * 109.62827 * 350.90124 * 26 12 10 52 52 H 1.09002 * 109.62514 * 111.28817 * 26 12 10 53 53 H 1.00901 * 110.99208 * 174.17761 * 27 6 5 54 54 H 1.08997 * 109.46287 * 301.72986 * 28 27 6 55 55 H 1.09001 * 109.46624 * 181.75652 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0412 -0.7234 1.2491 5 6 3.5711 -0.7716 1.2111 6 6 4.0238 -1.4734 -0.0714 7 1 3.6383 -2.4929 -0.0829 8 6 5.5525 -1.5060 -0.1224 9 7 5.9866 -2.0697 -1.4030 10 6 7.3009 -2.1971 -1.6724 11 8 8.1262 -1.7604 -0.8936 12 7 7.7005 -2.8085 -2.8050 13 6 9.1270 -3.0500 -3.0697 14 6 9.3056 -4.5325 -3.4337 15 7 8.4028 -4.8714 -4.5419 16 6 8.6644 -6.2293 -5.0376 17 6 10.0380 -6.2826 -5.6553 18 1 10.6550 -5.3965 -5.6771 19 6 10.5070 -7.4626 -6.1926 20 7 11.7057 -7.5092 -6.7313 21 14 9.4399 -8.9954 -6.1543 22 1 8.6119 -9.0530 -7.3856 23 1 10.3059 -10.1996 -6.0833 24 1 8.5538 -8.9520 -4.9634 25 6 6.9958 -4.7163 -4.1494 26 6 6.7220 -3.2468 -3.8119 27 7 3.5092 -0.7426 -1.2376 28 6 2.0409 -0.7240 -1.2478 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1308 1.4415 -0.0005 33 1 1.6766 1.9566 -0.8893 34 1 1.6789 1.9558 0.8907 35 1 1.6452 -1.7387 1.2696 36 1 1.7156 -0.1863 2.1399 37 1 3.9678 0.2436 1.2297 38 1 3.9396 -1.3221 2.0767 39 1 5.9411 -0.4927 -0.0210 40 1 5.9301 -2.1232 0.6929 41 1 5.3279 -2.3513 -2.0571 42 1 9.4566 -2.4239 -3.8989 43 1 9.7093 -2.8178 -2.1780 44 1 9.0694 -5.1531 -2.5693 45 1 10.3373 -4.7097 -3.7378 46 1 8.6112 -6.9352 -4.2087 47 1 7.9184 -6.4923 -5.7875 48 1 12.0356 -8.3392 -7.1096 49 1 6.7917 -5.3343 -3.2751 50 1 6.3522 -5.0264 -4.9727 51 1 5.7136 -3.1448 -3.4112 52 1 6.8226 -2.6371 -4.7098 53 1 3.8719 -1.1301 -2.0957 54 1 1.6647 -1.7469 -1.2537 55 1 1.6905 -0.2031 -2.1388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892378059.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:13 Heat of formation + Delta-G solvation = -42.037157 kcal Electronic energy + Delta-G solvation = -30485.836512 eV Core-core repulsion = 26556.488710 eV Total energy + Delta-G solvation = -3929.347802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.56113 -40.47646 -39.13947 -36.68200 -35.99778 -34.50417 -34.07083 -32.78497 -32.02506 -30.58228 -28.92414 -28.05856 -27.19659 -25.62297 -24.78192 -24.17602 -23.45464 -22.13399 -21.91674 -20.60787 -19.42828 -19.22501 -18.87936 -17.42166 -17.15765 -16.80968 -16.58687 -16.12114 -16.05055 -15.81175 -15.56012 -15.41976 -15.24726 -15.12171 -15.01657 -14.67011 -14.46121 -14.31376 -14.12534 -13.81847 -13.58217 -13.31148 -13.12114 -12.86466 -12.84542 -12.67441 -12.58174 -12.50109 -12.32071 -12.30969 -12.21072 -11.96306 -11.87925 -11.85679 -11.47184 -11.44144 -11.29408 -11.15567 -11.04257 -10.77248 -10.28171 -9.60874 -9.35552 -9.04970 -8.27223 -6.30884 1.35210 1.37143 1.46956 1.56187 2.08726 2.34726 2.80198 3.04823 3.14693 3.14875 3.69955 3.76445 3.91891 3.95286 4.02938 4.07737 4.09909 4.18554 4.23669 4.29692 4.41085 4.48073 4.51996 4.63635 4.65237 4.69866 4.73249 4.80160 4.81696 4.84269 4.86093 4.88415 4.93289 4.94824 5.01055 5.02737 5.11181 5.11400 5.13754 5.21012 5.31687 5.39346 5.41254 5.45460 5.48834 5.52674 5.66699 5.83351 6.00142 6.07038 6.27712 6.41491 6.62090 6.75892 6.90355 7.32573 7.49282 8.89104 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021910 B = 0.002061 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.651960 B =13580.836034 C =14269.188703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.129 4.129 4 C -0.106 4.106 5 C -0.112 4.112 6 C 0.090 3.910 7 H 0.050 0.950 8 C 0.148 3.852 9 N -0.730 5.730 10 C 0.705 3.295 11 O -0.634 6.634 12 N -0.628 5.628 13 C 0.146 3.854 14 C 0.059 3.941 15 N -0.538 5.538 16 C 0.172 3.828 17 C -0.517 4.517 18 H 0.040 0.960 19 C 0.006 3.994 20 N -0.947 5.947 21 Si 0.948 3.052 22 H -0.262 1.262 23 H -0.286 1.286 24 H -0.253 1.253 25 C 0.035 3.965 26 C 0.125 3.875 27 N -0.686 5.686 28 C 0.070 3.930 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.404 0.596 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.019 0.981 45 H 0.071 0.929 46 H -0.016 1.016 47 H 0.037 0.963 48 H 0.266 0.734 49 H 0.027 0.973 50 H 0.100 0.900 51 H 0.109 0.891 52 H 0.085 0.915 53 H 0.343 0.657 54 H 0.034 0.966 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.373 14.123 14.632 34.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.187 4.187 4 C -0.144 4.144 5 C -0.150 4.150 6 C -0.020 4.020 7 H 0.068 0.932 8 C 0.024 3.976 9 N -0.389 5.389 10 C 0.407 3.593 11 O -0.516 6.516 12 N -0.365 5.365 13 C 0.022 3.978 14 C -0.071 4.071 15 N -0.263 5.263 16 C 0.045 3.955 17 C -0.555 4.555 18 H 0.058 0.942 19 C -0.191 4.191 20 N -0.588 5.588 21 Si 0.772 3.228 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.177 1.177 25 C -0.093 4.093 26 C 0.002 3.998 27 N -0.320 5.320 28 C -0.059 4.059 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.243 0.757 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.037 0.963 45 H 0.089 0.911 46 H 0.001 0.999 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.118 0.882 51 H 0.127 0.873 52 H 0.104 0.896 53 H 0.162 0.838 54 H 0.053 0.947 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.541 15.255 15.042 34.108 hybrid contribution -0.081 -2.483 -0.249 2.497 sum -26.622 12.772 14.793 33.026 Atomic orbital electron populations 1.21820 0.93743 1.01932 1.02208 1.20606 0.95393 0.95935 0.94531 1.21735 1.01534 0.94583 1.00816 1.21620 0.94544 1.00455 0.97770 1.21600 0.96468 1.01391 0.95552 1.21626 0.91577 0.96051 0.92760 0.93231 1.21294 0.93889 0.98433 0.84022 1.45038 1.04481 1.68500 1.20855 1.15953 0.83396 0.78719 0.81267 1.90874 1.53426 1.56393 1.50917 1.47390 1.08083 1.61559 1.19418 1.21527 0.80608 0.94606 1.01070 1.22329 0.98317 0.95069 0.91344 1.61792 1.03623 1.27508 1.33333 1.19940 0.95862 0.85703 0.93951 1.21263 1.00414 0.96536 1.37279 0.94159 1.25858 0.96304 1.02394 0.94530 1.70046 1.19424 1.28403 1.40921 0.85705 0.78982 0.78290 0.79857 1.18650 1.21144 1.17675 1.22601 0.90080 0.96617 1.00046 1.21868 0.91888 0.94145 0.91910 1.60258 1.08644 1.58319 1.04744 1.21998 0.86620 0.98742 0.98562 0.92214 0.92323 0.92521 0.92415 0.93282 0.93220 0.91944 0.91116 0.91119 0.90713 0.92224 0.92051 0.75723 0.90891 0.89863 0.96315 0.91092 0.99869 0.94483 0.92483 0.95429 0.88161 0.87274 0.89636 0.83772 0.94747 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.48 71.98 0.61 -0.49 16 2 C -0.06 -0.62 0.77 -52.13 -0.04 -0.66 16 3 C -0.13 -1.48 8.04 71.98 0.58 -0.90 16 4 C -0.11 -1.02 4.79 30.68 0.15 -0.87 16 5 C -0.11 -1.27 5.02 30.65 0.15 -1.12 16 6 C 0.09 1.11 2.68 44.92 0.12 1.23 16 7 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 8 C 0.15 2.67 5.38 86.38 0.46 3.13 16 9 N -0.73 -14.32 5.17 -478.55 -2.47 -16.79 16 10 C 0.71 20.47 8.31 179.06 1.49 21.96 16 11 O -0.63 -23.88 15.83 -4.00 -0.06 -23.95 16 12 N -0.63 -17.68 3.00 -835.05 -2.51 -20.19 16 13 C 0.15 4.84 6.61 86.50 0.57 5.41 16 14 C 0.06 2.26 5.47 86.54 0.47 2.73 16 15 N -0.54 -20.87 4.62 -898.88 -4.15 -25.03 16 16 C 0.17 7.91 3.79 85.56 0.32 8.24 16 17 C -0.52 -29.19 8.96 25.60 0.23 -28.96 16 18 H 0.04 2.54 7.37 -2.91 -0.02 2.52 16 19 C 0.01 0.37 5.47 84.66 0.46 0.83 16 20 N -0.95 -58.70 13.96 21.45 0.30 -58.40 16 21 Si 0.95 43.11 27.47 68.60 1.88 45.00 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 24 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 25 C 0.04 0.99 5.62 86.38 0.49 1.47 16 26 C 0.12 2.70 6.59 86.35 0.57 3.27 16 27 N -0.69 -7.98 5.79 -491.51 -2.84 -10.82 16 28 C 0.07 0.69 5.27 86.33 0.46 1.14 16 29 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.06 0.83 6.01 -2.39 -0.01 0.82 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.94 6.58 -2.38 -0.02 0.92 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.40 5.53 4.61 -92.71 -0.43 5.10 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.08 2.88 7.09 -2.39 -0.02 2.87 16 44 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 3.16 6.67 -2.38 -0.02 3.14 16 46 H -0.02 -0.77 7.18 -2.39 -0.02 -0.78 16 47 H 0.04 1.62 7.40 -2.39 -0.02 1.61 16 48 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.10 2.44 7.99 -2.39 -0.02 2.42 16 51 H 0.11 1.44 5.63 -2.39 -0.01 1.43 16 52 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 53 H 0.34 3.54 7.08 -89.69 -0.63 2.90 16 54 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 55 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -72.05 408.17 -3.01 -75.06 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -0.25 Total: 18.68 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 7.09 Total: 16.43 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -11.68 Total: -131.23 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.95 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 45.00 kcal Total: -72.05 -3.01 -75.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892378059.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.025 kcal (2) G-P(sol) polarization free energy of solvation -72.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds