Wall clock time and date at job start Tue Mar 31 2020 23:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.03909 * 2 1 4 4 C 1.50824 * 109.04791 * 241.09313 * 2 1 3 5 5 N 1.47626 * 108.03967 * 334.51018 * 4 2 1 6 6 C 1.39773 * 114.76429 * 277.18443 * 5 4 2 7 7 C 1.54435 * 111.76885 * 62.27813 * 6 5 4 8 8 C 1.50685 * 108.95598 * 282.62057 * 7 6 5 9 9 H 1.08998 * 108.91119 * 332.24728 * 8 7 6 10 10 N 1.46500 * 108.77072 * 213.88244 * 8 7 6 11 11 C 1.34776 * 120.00399 * 81.92581 * 10 8 7 12 12 O 1.21591 * 119.99778 * 5.11555 * 11 10 8 13 13 N 1.34772 * 120.00377 * 185.11428 * 11 10 8 14 14 C 1.47087 * 120.88148 * 184.85931 * 13 11 10 15 15 C 1.53694 * 108.27578 * 128.75370 * 14 13 11 16 16 N 1.46901 * 109.26049 * 54.08345 * 15 14 13 17 17 C 1.46898 * 110.99826 * 172.60655 * 16 15 14 18 18 C 1.50701 * 109.46935 * 294.29568 * 17 16 15 19 19 H 1.07998 * 120.00056 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99804 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99572 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00030 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47109 * 60.00111 * 22 20 18 24 24 H 1.48496 * 109.47440 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47195 * 300.00107 * 22 20 18 26 26 C 1.46900 * 111.26448 * 296.75226 * 16 15 14 27 27 C 1.47074 * 120.88038 * 5.12968 * 13 11 10 28 28 C 1.53814 * 109.05530 * 118.98231 * 2 1 3 29 29 H 1.08999 * 109.46712 * 283.28406 * 1 2 3 30 30 H 1.08998 * 109.47006 * 43.28900 * 1 2 3 31 31 H 1.09004 * 109.46957 * 163.28887 * 1 2 3 32 32 H 1.08998 * 109.47231 * 178.98219 * 3 2 1 33 33 H 1.09003 * 109.47345 * 298.98094 * 3 2 1 34 34 H 1.09000 * 109.46799 * 58.97786 * 3 2 1 35 35 H 1.09002 * 109.74386 * 94.14589 * 4 2 1 36 36 H 1.09002 * 109.75012 * 214.81722 * 4 2 1 37 37 H 1.00904 * 111.00284 * 44.04624 * 5 4 2 38 38 H 1.09010 * 109.02466 * 182.87093 * 6 5 4 39 39 H 1.09004 * 109.02600 * 301.76567 * 6 5 4 40 40 H 1.09000 * 109.54138 * 42.47611 * 7 6 5 41 41 H 1.08999 * 109.54251 * 162.73763 * 7 6 5 42 42 H 0.97006 * 119.99900 * 261.92488 * 10 8 7 43 43 H 1.09000 * 109.62483 * 248.52274 * 14 13 11 44 44 H 1.09003 * 109.62607 * 9.09832 * 14 13 11 45 45 H 1.08995 * 109.64755 * 294.07310 * 15 14 13 46 46 H 1.09003 * 109.43822 * 173.96333 * 15 14 13 47 47 H 1.08991 * 109.47456 * 54.30201 * 17 16 15 48 48 H 1.09006 * 109.46734 * 174.29949 * 17 16 15 49 49 H 0.97001 * 119.99055 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.49583 * 303.14906 * 26 16 15 51 51 H 1.08999 * 109.51449 * 183.07526 * 26 16 15 52 52 H 1.09000 * 109.63158 * 350.90271 * 27 13 11 53 53 H 1.09005 * 109.62576 * 111.48347 * 27 13 11 54 54 H 1.08999 * 108.98236 * 200.23926 * 28 2 1 55 55 H 1.09005 * 108.97430 * 319.02873 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0292 1.4463 0.0000 4 6 2.0223 -0.6891 -1.2480 5 7 0.9738 -1.6267 -1.6963 6 6 0.9790 -2.8647 -1.0474 7 6 0.7158 -2.7185 0.4673 8 6 1.9766 -2.2394 1.1392 9 1 2.8358 -2.5741 0.5579 10 7 2.0531 -2.8331 2.4763 11 6 2.5210 -4.0876 2.6310 12 8 2.9661 -4.6926 1.6748 13 7 2.4954 -4.6715 3.8454 14 6 3.0965 -5.9968 4.0586 15 6 4.0436 -5.9080 5.2659 16 7 3.3105 -5.3665 6.4180 17 6 4.1270 -5.4280 7.6376 18 6 4.3734 -6.8686 8.0050 19 1 3.9647 -7.6594 7.3935 20 6 5.1206 -7.1771 9.1220 21 7 5.6178 -6.2140 9.8670 22 14 5.4266 -8.9627 9.5771 23 1 6.1438 -9.6404 8.4674 24 1 6.2509 -9.0249 10.8107 25 1 4.1280 -9.6423 9.8153 26 6 2.8512 -3.9951 6.1605 27 6 1.8606 -4.0028 4.9913 28 6 2.0322 -0.7045 1.2718 29 1 -0.3633 0.2361 1.0002 30 1 -0.3633 0.7480 -0.7046 31 1 -0.3633 -0.9843 -0.2955 32 1 3.1190 1.4546 0.0183 33 1 1.6770 1.9523 -0.8990 34 1 1.6470 1.9625 0.8807 35 1 2.2126 0.0501 -2.0262 36 1 2.9386 -1.2373 -1.0290 37 1 0.0615 -1.1981 -1.6501 38 1 0.2056 -3.4974 -1.4829 39 1 1.9496 -3.3387 -1.1940 40 1 -0.0826 -1.9946 0.6304 41 1 0.4248 -3.6837 0.8817 42 1 1.7669 -2.3234 3.2505 43 1 2.3120 -6.7269 4.2577 44 1 3.6580 -6.2912 3.1719 45 1 4.8813 -5.2528 5.0271 46 1 4.4175 -6.9029 5.5076 47 1 5.0803 -4.9296 7.4622 48 1 3.6012 -4.9300 8.4523 49 1 6.1432 -6.4311 10.6530 50 1 3.7055 -3.3665 5.9092 51 1 2.3599 -3.6025 7.0508 52 1 1.6046 -2.9782 4.7215 53 1 0.9596 -4.5449 5.2784 54 1 3.0620 -0.4019 1.4615 55 1 1.4123 -0.3986 2.1146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892485929.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:26 Heat of formation + Delta-G solvation = -9.370080 kcal Electronic energy + Delta-G solvation = -31163.722075 eV Core-core repulsion = 27235.790823 eV Total energy + Delta-G solvation = -3927.931252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00535 -40.98748 -39.09222 -36.22852 -36.00079 -35.48026 -34.40574 -32.47707 -31.53602 -29.87853 -29.05217 -28.25678 -27.18773 -26.47709 -24.86737 -24.14425 -23.66201 -22.27641 -21.65126 -20.67542 -19.62215 -18.93682 -18.50125 -17.80700 -17.53299 -16.95491 -16.61023 -16.39059 -16.03016 -15.75713 -15.64435 -15.51631 -15.29030 -14.94025 -14.79903 -14.65441 -14.49685 -14.07451 -13.90449 -13.72087 -13.55639 -13.29561 -13.10609 -13.01274 -12.83679 -12.77431 -12.57501 -12.46563 -12.35025 -12.26455 -12.19816 -12.11060 -11.88448 -11.76415 -11.67401 -11.37818 -11.35205 -11.17686 -10.94732 -10.62128 -10.25792 -9.63002 -9.13029 -9.05882 -8.21816 -6.31608 1.41840 1.44381 1.52115 1.57643 2.08487 2.39813 2.81978 3.10353 3.20511 3.43815 3.57957 3.75320 3.82846 3.92309 3.95440 4.02426 4.11992 4.13041 4.22497 4.27642 4.40478 4.41505 4.47629 4.57025 4.57936 4.64093 4.67914 4.69802 4.77486 4.82226 4.90227 4.92214 4.92935 4.98870 4.99561 5.08075 5.08652 5.15334 5.19393 5.21001 5.24742 5.37176 5.40493 5.43312 5.46113 5.59273 5.62548 5.90880 6.02037 6.23649 6.34120 6.56384 6.64838 6.83544 6.92081 7.38096 7.51106 8.89067 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027536 B = 0.002138 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.594227 B =13091.592706 C =13615.999010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.137 4.137 4 C 0.072 3.928 5 N -0.707 5.707 6 C 0.084 3.916 7 C -0.182 4.182 8 C 0.168 3.832 9 H 0.052 0.948 10 N -0.733 5.733 11 C 0.704 3.296 12 O -0.632 6.632 13 N -0.629 5.629 14 C 0.146 3.854 15 C 0.058 3.942 16 N -0.538 5.538 17 C 0.210 3.790 18 C -0.525 4.525 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.269 1.269 24 H -0.284 1.284 25 H -0.267 1.267 26 C 0.037 3.963 27 C 0.128 3.872 28 C -0.108 4.108 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.360 0.640 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.105 0.895 41 H 0.048 0.952 42 H 0.404 0.596 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.008 0.992 46 H 0.080 0.920 47 H -0.043 1.043 48 H 0.012 0.988 49 H 0.264 0.736 50 H 0.018 0.982 51 H 0.090 0.910 52 H 0.108 0.892 53 H 0.086 0.914 54 H 0.064 0.936 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.671 16.393 -20.612 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.057 4.057 5 N -0.342 5.342 6 C -0.048 4.048 7 C -0.223 4.223 8 C 0.064 3.936 9 H 0.070 0.930 10 N -0.391 5.391 11 C 0.406 3.594 12 O -0.513 6.513 13 N -0.366 5.366 14 C 0.022 3.978 15 C -0.072 4.072 16 N -0.263 5.263 17 C 0.084 3.916 18 C -0.563 4.563 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.574 5.574 22 Si 0.793 3.207 23 H -0.194 1.194 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.092 4.092 27 C 0.006 3.994 28 C -0.146 4.146 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.188 0.812 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.243 0.757 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.026 0.974 46 H 0.098 0.902 47 H -0.025 1.025 48 H 0.030 0.970 49 H 0.073 0.927 50 H 0.036 0.964 51 H 0.108 0.892 52 H 0.126 0.874 53 H 0.104 0.896 54 H 0.083 0.917 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.312 15.479 -21.576 29.704 hybrid contribution 1.140 -0.094 1.988 2.294 sum -12.172 15.385 -19.588 27.722 Atomic orbital electron populations 1.22645 0.93905 1.03051 1.03303 1.20855 0.96824 0.96474 0.94620 1.21904 1.01017 0.93920 1.02635 1.21873 0.94025 0.94597 0.95179 1.57674 1.10205 1.05236 1.61126 1.20728 1.01644 0.92073 0.90366 1.23094 0.98759 1.01952 0.98489 1.20766 0.97955 0.93207 0.81689 0.92971 1.45455 1.69602 1.13265 1.10774 1.15989 0.78542 0.82204 0.82666 1.90860 1.54912 1.65503 1.40060 1.47426 1.60657 1.20223 1.08287 1.21564 0.96274 0.83303 0.96631 1.22362 0.93981 1.00487 0.90334 1.61999 1.41020 1.19898 1.03342 1.19364 0.88995 0.96342 0.86947 1.21437 1.31827 0.92831 1.10188 0.91676 1.25901 0.95395 1.02131 0.96186 1.70076 1.36229 1.34125 1.17011 0.85448 0.78454 0.79292 0.77517 1.19415 1.20993 1.19143 1.22534 0.97743 0.89655 0.99242 1.21824 0.95378 0.98428 0.83814 1.22255 1.02313 0.91147 0.98912 0.91600 0.90994 0.90281 0.92800 0.91363 0.92153 0.89375 0.92572 0.81241 0.90500 0.93671 0.87695 0.93312 0.75704 0.90334 0.89828 0.97363 0.90217 1.02486 0.97037 0.92694 0.96375 0.89170 0.87394 0.89579 0.91739 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 6.49 71.98 0.47 -0.82 16 2 C -0.09 -0.85 0.73 -52.61 -0.04 -0.89 16 3 C -0.14 -1.12 8.02 71.98 0.58 -0.55 16 4 C 0.07 0.93 5.70 85.46 0.49 1.42 16 5 N -0.71 -9.86 6.32 -528.94 -3.34 -13.20 16 6 C 0.08 1.48 5.90 88.07 0.52 2.00 16 7 C -0.18 -3.15 5.19 30.33 0.16 -2.99 16 8 C 0.17 3.22 1.98 44.64 0.09 3.31 16 9 H 0.05 1.36 5.94 -2.39 -0.01 1.34 16 10 N -0.73 -15.81 4.87 -459.52 -2.24 -18.05 16 11 C 0.70 21.38 7.96 179.06 1.43 22.80 16 12 O -0.63 -24.11 15.46 -4.00 -0.06 -24.17 16 13 N -0.63 -18.70 3.00 -835.02 -2.51 -21.21 16 14 C 0.15 4.88 6.61 86.50 0.57 5.45 16 15 C 0.06 2.29 5.47 86.54 0.47 2.76 16 16 N -0.54 -22.49 4.62 -898.88 -4.15 -26.64 16 17 C 0.21 10.97 4.72 85.56 0.40 11.38 16 18 C -0.52 -29.29 8.41 25.60 0.22 -29.07 16 19 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 20 C 0.00 0.12 5.46 84.65 0.46 0.58 16 21 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 22 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 C 0.04 1.21 5.62 86.39 0.49 1.70 16 27 C 0.13 3.14 6.60 86.35 0.57 3.71 16 28 C -0.11 -1.40 4.44 31.26 0.14 -1.26 16 29 H 0.07 0.46 7.71 -2.39 -0.02 0.44 16 30 H 0.07 0.41 8.02 -2.39 -0.02 0.39 16 31 H 0.08 0.65 2.87 -2.39 -0.01 0.65 16 32 H 0.05 0.50 8.12 -2.39 -0.02 0.48 16 33 H 0.07 0.45 8.04 -2.39 -0.02 0.44 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.98 7.66 -2.39 -0.02 0.96 16 36 H 0.06 0.96 6.66 -2.39 -0.02 0.94 16 37 H 0.36 3.72 5.48 -89.69 -0.49 3.22 16 38 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.04 1.05 7.54 -2.39 -0.02 1.03 16 40 H 0.11 1.33 4.37 -2.39 -0.01 1.32 16 41 H 0.05 1.09 7.69 -2.39 -0.02 1.07 16 42 H 0.40 6.56 5.96 -92.70 -0.55 6.01 16 43 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.08 2.89 7.09 -2.39 -0.02 2.87 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 46 H 0.08 3.40 6.67 -2.39 -0.02 3.39 16 47 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 48 H 0.01 0.64 7.97 -2.38 -0.02 0.62 16 49 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.09 2.76 7.99 -2.39 -0.02 2.74 16 52 H 0.11 1.78 5.63 -2.39 -0.01 1.77 16 53 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 54 H 0.06 0.93 7.95 -2.39 -0.02 0.91 16 55 H 0.08 0.84 7.47 -2.38 -0.02 0.82 16 Total: -1.00 -70.48 396.94 -3.14 -73.62 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.15 Total: 19.62 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 7.00 Total: 19.52 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -11.96 Total: -134.60 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -70.48 -3.14 -73.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892485929.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.246 kcal (2) G-P(sol) polarization free energy of solvation -70.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds