Wall clock time and date at job start Tue Mar 31 2020 23:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 108.81815 * 2 1 4 4 C 1.54066 * 108.91927 * 241.38898 * 2 1 3 5 5 N 1.44376 * 111.89251 * 198.18286 * 4 2 1 6 6 C 1.47802 * 109.41406 * 96.56229 * 5 4 2 7 7 C 1.45857 * 112.82579 * 276.60484 * 6 5 4 8 8 C 1.54502 * 111.59991 * 61.38024 * 7 6 5 9 9 H 1.09004 * 109.57453 * 42.60527 * 8 7 6 10 10 N 1.46502 * 109.57412 * 162.98213 * 8 7 6 11 11 C 1.34777 * 120.00221 * 275.00014 * 10 8 7 12 12 O 1.21584 * 119.99691 * 354.84596 * 11 10 8 13 13 N 1.34780 * 120.00045 * 174.84086 * 11 10 8 14 14 C 1.47073 * 120.88425 * 184.71300 * 13 11 10 15 15 C 1.53699 * 108.27735 * 128.75318 * 14 13 11 16 16 N 1.46901 * 109.25274 * 54.08791 * 15 14 13 17 17 C 1.46902 * 110.99529 * 172.60610 * 16 15 14 18 18 C 1.50704 * 109.47136 * 59.44853 * 17 16 15 19 19 H 1.08003 * 119.99637 * 355.08725 * 18 17 16 20 20 C 1.37873 * 119.99689 * 175.09389 * 18 17 16 21 21 N 1.31519 * 119.99764 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00396 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47205 * 90.00010 * 22 20 18 24 24 H 1.48494 * 109.47676 * 210.00132 * 22 20 18 25 25 H 1.48499 * 109.47164 * 330.00433 * 22 20 18 26 26 C 1.46900 * 111.26444 * 296.75247 * 16 15 14 27 27 C 1.47079 * 120.87957 * 4.99565 * 13 11 10 28 28 C 1.50457 * 108.84810 * 282.79636 * 8 7 6 29 29 H 1.09006 * 109.47391 * 301.38019 * 1 2 3 30 30 H 1.08998 * 109.47474 * 61.38447 * 1 2 3 31 31 H 1.09005 * 109.47399 * 181.38367 * 1 2 3 32 32 H 1.09000 * 109.47007 * 178.61621 * 3 2 1 33 33 H 1.08997 * 109.47508 * 298.61542 * 3 2 1 34 34 H 1.09004 * 109.47013 * 58.61730 * 3 2 1 35 35 H 1.08997 * 108.97970 * 318.83137 * 4 2 1 36 36 H 1.09002 * 108.98141 * 77.54282 * 4 2 1 37 37 H 1.00905 * 111.10440 * 333.64965 * 5 4 2 38 38 H 1.09003 * 108.79297 * 155.77738 * 6 5 4 39 39 H 1.08997 * 108.79261 * 37.43675 * 6 5 4 40 40 H 1.09002 * 109.05468 * 181.92836 * 7 6 5 41 41 H 1.09007 * 109.05395 * 300.90393 * 7 6 5 42 42 H 0.96998 * 119.99398 * 95.00241 * 10 8 7 43 43 H 1.08998 * 109.62918 * 248.53046 * 14 13 11 44 44 H 1.09007 * 109.62260 * 9.10677 * 14 13 11 45 45 H 1.08997 * 109.64852 * 294.08246 * 15 14 13 46 46 H 1.08998 * 109.42024 * 173.95148 * 15 14 13 47 47 H 1.08998 * 109.46510 * 179.44583 * 17 16 15 48 48 H 1.08997 * 109.47202 * 299.44787 * 17 16 15 49 49 H 0.97001 * 120.00166 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.49897 * 303.14401 * 26 16 15 51 51 H 1.09002 * 109.50692 * 183.07904 * 26 16 15 52 52 H 1.09004 * 109.63187 * 350.89098 * 27 13 11 53 53 H 1.08992 * 109.63537 * 111.27887 * 27 13 11 54 54 H 1.08997 * 108.77089 * 213.07916 * 28 8 7 55 55 H 1.09003 * 108.77155 * 331.24141 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0234 1.4482 0.0000 4 6 2.0294 -0.6979 -1.2795 5 7 3.4080 -1.1111 -1.1641 6 6 3.4628 -2.5333 -0.7655 7 6 3.3297 -2.7229 0.6746 8 6 1.9718 -2.1999 1.1940 9 1 1.1794 -2.4952 0.5061 10 7 1.7060 -2.7588 2.5218 11 6 1.1351 -3.9740 2.6396 12 8 0.7553 -4.5659 1.6477 13 7 0.9854 -4.5332 3.8567 14 6 0.4601 -5.8994 4.0004 15 6 1.4236 -6.6946 4.8958 16 7 1.6213 -5.9698 6.1582 17 6 2.3945 -6.7759 7.1124 18 6 3.7386 -7.1071 6.5168 19 1 3.9633 -6.8227 5.4994 20 6 4.6814 -7.7732 7.2707 21 7 5.8546 -8.0618 6.7512 22 14 4.2929 -8.2647 9.0305 23 1 3.6866 -9.6202 9.0436 24 1 5.5444 -8.2745 9.8296 25 1 3.3385 -7.2900 9.6174 26 6 2.2606 -4.6670 5.9301 27 6 1.3371 -3.7911 5.0768 28 6 2.0302 -0.6990 1.2812 29 1 -0.3634 0.5351 0.8774 30 1 -0.3634 0.4922 -0.9021 31 1 -0.3634 -1.0274 0.0248 32 1 3.1131 1.4607 0.0248 33 1 1.6748 1.9509 -0.9021 34 1 1.6341 1.9648 0.8774 35 1 1.4104 -1.5746 -1.4698 36 1 1.9341 -0.0094 -2.1191 37 1 3.9071 -0.5316 -0.5059 38 1 4.4161 -2.9520 -1.0881 39 1 2.6569 -3.0697 -1.2663 40 1 3.4126 -3.7855 0.9028 41 1 4.1332 -2.1869 1.1799 42 1 1.9408 -2.2542 3.3162 43 1 -0.5278 -5.8655 4.4597 44 1 0.3952 -6.3717 3.0201 45 1 2.3818 -6.8118 4.3897 46 1 0.9987 -7.6767 5.1029 47 1 2.5346 -6.2119 8.0345 48 1 1.8558 -7.6984 7.3290 49 1 6.5178 -8.5308 7.2814 50 1 3.2072 -4.8125 5.4097 51 1 2.4431 -4.1786 6.8873 52 1 1.8524 -2.8687 4.8087 53 1 0.4318 -3.5553 5.6359 54 1 1.4172 -0.3724 2.1212 55 1 3.0617 -0.3982 1.4649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892485931.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:31 Heat of formation + Delta-G solvation = -41.328833 kcal Electronic energy + Delta-G solvation = -31480.399945 eV Core-core repulsion = 27551.082857 eV Total energy + Delta-G solvation = -3929.317087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80872 -40.66373 -39.10971 -36.24108 -36.04338 -35.72827 -34.36117 -32.57104 -31.64710 -30.26345 -29.08738 -28.17828 -27.16704 -26.06448 -24.73336 -24.17050 -23.56276 -22.39127 -21.75750 -20.81243 -19.82528 -19.05372 -18.72087 -17.74764 -16.99969 -16.75537 -16.52372 -16.28271 -16.11948 -15.99030 -15.82500 -15.54839 -15.28419 -14.99590 -14.76286 -14.45449 -14.26902 -14.09604 -13.97934 -13.92912 -13.75386 -13.33857 -13.16011 -13.07278 -13.03048 -12.77586 -12.51126 -12.44558 -12.29519 -12.20357 -12.09598 -12.03457 -11.88067 -11.76752 -11.73250 -11.65147 -11.57583 -11.31590 -11.18151 -10.81636 -10.25756 -9.62915 -9.36617 -9.03998 -8.33476 -6.40045 1.36677 1.37216 1.48921 1.56229 2.08941 2.32587 2.82270 3.01662 3.22301 3.35656 3.52653 3.65395 3.80619 3.94416 3.99358 4.06551 4.08182 4.11533 4.18103 4.33049 4.38520 4.45136 4.51331 4.55787 4.57852 4.60108 4.68368 4.72924 4.82817 4.83839 4.90796 4.94426 4.96484 5.00032 5.04373 5.04987 5.07077 5.08763 5.10564 5.16471 5.17107 5.32647 5.34778 5.43456 5.46026 5.46436 5.55375 5.87411 6.04764 6.07072 6.27022 6.32124 6.50782 6.67114 6.90715 7.27451 7.49707 8.83036 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.002526 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.378139 B =11083.801604 C =11537.234362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.136 4.136 4 C 0.061 3.939 5 N -0.668 5.668 6 C 0.059 3.941 7 C -0.157 4.157 8 C 0.169 3.831 9 H 0.069 0.931 10 N -0.730 5.730 11 C 0.704 3.296 12 O -0.634 6.634 13 N -0.629 5.629 14 C 0.145 3.855 15 C 0.054 3.946 16 N -0.522 5.522 17 C 0.159 3.841 18 C -0.551 4.551 19 H 0.027 0.973 20 C 0.009 3.991 21 N -0.951 5.951 22 Si 0.953 3.047 23 H -0.269 1.269 24 H -0.287 1.287 25 H -0.238 1.238 26 C 0.048 3.952 27 C 0.126 3.874 28 C -0.117 4.117 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.348 0.652 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.406 0.594 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.004 0.996 46 H 0.082 0.918 47 H 0.041 0.959 48 H 0.031 0.969 49 H 0.266 0.734 50 H 0.008 0.992 51 H 0.092 0.908 52 H 0.100 0.900 53 H 0.097 0.903 54 H 0.082 0.918 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 21.088 -9.485 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.069 4.069 5 N -0.298 5.298 6 C -0.070 4.070 7 C -0.197 4.197 8 C 0.064 3.936 9 H 0.087 0.913 10 N -0.388 5.388 11 C 0.405 3.595 12 O -0.515 6.515 13 N -0.366 5.366 14 C 0.021 3.979 15 C -0.075 4.075 16 N -0.245 5.245 17 C 0.031 3.969 18 C -0.590 4.590 19 H 0.045 0.955 20 C -0.189 4.189 21 N -0.591 5.591 22 Si 0.776 3.224 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.161 1.161 26 C -0.082 4.082 27 C 0.003 3.997 28 C -0.155 4.155 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.167 0.833 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.245 0.755 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.022 0.978 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.050 0.950 49 H 0.074 0.926 50 H 0.026 0.974 51 H 0.110 0.890 52 H 0.118 0.882 53 H 0.115 0.885 54 H 0.101 0.899 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.236 20.567 -10.653 25.744 hybrid contribution 1.320 -1.078 1.540 2.297 sum -9.916 19.489 -9.113 23.690 Atomic orbital electron populations 1.21888 0.94165 1.01102 1.02597 1.21549 0.96362 0.96688 0.94012 1.21873 1.01313 0.93571 1.02567 1.22078 0.88756 0.99525 0.96587 1.61107 1.13024 1.02612 1.53023 1.20802 1.02525 0.90651 0.93070 1.21638 0.98068 1.01237 0.98759 1.20553 0.96183 0.93848 0.83007 0.91312 1.45307 1.65707 1.17918 1.09851 1.16015 0.78466 0.81915 0.83064 1.90848 1.58259 1.64848 1.37577 1.47411 1.67959 1.16413 1.04779 1.21617 0.96692 0.80270 0.99290 1.22336 0.97055 0.97631 0.90513 1.62450 1.47610 1.03933 1.10530 1.20113 0.90152 0.93791 0.92796 1.21903 1.00053 1.37511 0.99504 0.95492 1.25992 0.94348 0.95045 1.03547 1.70101 1.07200 1.42282 1.39494 0.85625 0.78216 0.79846 0.78699 1.19413 1.21281 1.16084 1.22331 0.94796 0.90923 1.00126 1.21895 0.99748 0.93792 0.84274 1.21759 1.03186 0.91438 0.99097 0.91931 0.91586 0.94323 0.92108 0.91752 0.91973 0.93012 0.90090 0.83290 0.90714 0.92424 0.94157 0.90568 0.75519 0.89224 0.90426 0.97784 0.90012 0.94067 0.95045 0.92555 0.97396 0.89014 0.88186 0.88519 0.89913 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.13 71.98 0.58 -1.22 16 2 C -0.08 -1.02 0.52 -51.39 -0.03 -1.04 16 3 C -0.14 -1.22 8.15 71.98 0.59 -0.63 16 4 C 0.06 0.91 4.78 87.14 0.42 1.32 16 5 N -0.67 -10.88 6.91 -527.48 -3.64 -14.53 16 6 C 0.06 1.20 5.87 83.94 0.49 1.69 16 7 C -0.16 -3.49 4.96 28.92 0.14 -3.34 16 8 C 0.17 3.54 2.12 44.68 0.09 3.63 16 9 H 0.07 1.79 5.77 -2.39 -0.01 1.78 16 10 N -0.73 -17.06 4.91 -459.30 -2.25 -19.32 16 11 C 0.70 22.43 8.21 179.05 1.47 23.90 16 12 O -0.63 -25.05 15.46 -3.98 -0.06 -25.11 16 13 N -0.63 -19.10 3.00 -835.05 -2.51 -21.61 16 14 C 0.14 4.68 6.61 86.51 0.57 5.25 16 15 C 0.05 2.09 5.17 86.54 0.45 2.54 16 16 N -0.52 -20.01 4.83 -898.87 -4.34 -24.35 16 17 C 0.16 7.15 4.21 85.56 0.36 7.51 16 18 C -0.55 -30.63 8.32 25.60 0.21 -30.42 16 19 H 0.03 1.72 6.12 -2.91 -0.02 1.70 16 20 C 0.01 0.48 5.47 84.65 0.46 0.95 16 21 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 22 Si 0.95 42.63 27.57 68.60 1.89 44.52 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.24 -9.58 6.40 99.48 0.64 -8.95 16 26 C 0.05 1.62 5.25 86.38 0.45 2.07 16 27 C 0.13 3.11 6.59 86.35 0.57 3.68 16 28 C -0.12 -1.59 3.66 30.21 0.11 -1.48 16 29 H 0.06 0.73 8.12 -2.38 -0.02 0.71 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.65 7.39 -2.38 -0.02 0.63 16 32 H 0.06 0.51 7.49 -2.39 -0.02 0.49 16 33 H 0.06 0.54 8.06 -2.39 -0.02 0.52 16 34 H 0.06 0.50 8.14 -2.38 -0.02 0.49 16 35 H 0.05 0.95 6.34 -2.39 -0.02 0.93 16 36 H 0.08 1.10 7.92 -2.39 -0.02 1.08 16 37 H 0.35 4.78 6.67 -89.69 -0.60 4.18 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.33 7.24 -2.39 -0.02 1.31 16 40 H 0.04 1.20 8.06 -2.39 -0.02 1.18 16 41 H 0.08 1.49 7.58 -2.38 -0.02 1.47 16 42 H 0.41 7.31 6.02 -92.71 -0.56 6.75 16 43 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.69 7.09 -2.38 -0.02 2.67 16 45 H 0.00 0.18 6.62 -2.39 -0.02 0.17 16 46 H 0.08 3.04 8.11 -2.39 -0.02 3.03 16 47 H 0.04 1.79 6.78 -2.39 -0.02 1.78 16 48 H 0.03 1.40 7.81 -2.39 -0.02 1.38 16 49 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 50 H 0.01 0.33 7.11 -2.39 -0.02 0.31 16 51 H 0.09 2.84 8.06 -2.39 -0.02 2.82 16 52 H 0.10 1.84 5.64 -2.38 -0.01 1.82 16 53 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 54 H 0.08 1.02 7.70 -2.39 -0.02 1.00 16 55 H 0.08 0.92 6.60 -2.39 -0.02 0.91 16 Total: -1.00 -72.31 398.56 -4.00 -76.32 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.34 Total: 28.47 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 6.95 Total: 14.38 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -12.45 Total: -138.58 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.06 Total: -25.11 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.89 Total: 44.52 kcal Total: -72.31 -4.00 -76.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892485931.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.989 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds