Wall clock time and date at job start Tue Mar 31 2020 23:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 110.27425 * 2 1 4 4 C 1.54788 * 110.14835 * 237.80443 * 2 1 3 5 5 C 1.54930 * 102.83308 * 262.84947 * 4 2 1 6 6 N 1.48530 * 103.38195 * 322.79859 * 5 4 2 7 7 C 1.46899 * 111.00414 * 159.63960 * 6 5 4 8 8 C 1.53001 * 109.47454 * 183.83262 * 7 6 5 9 9 N 1.46496 * 109.47228 * 185.25241 * 8 7 6 10 10 C 1.34776 * 119.99910 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00332 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99941 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99844 * 180.02562 * 12 10 9 14 14 C 1.53043 * 109.45960 * 275.02243 * 13 12 10 15 15 C 1.53192 * 109.31044 * 178.60046 * 14 13 12 16 16 N 1.46924 * 108.76571 * 54.66128 * 15 14 13 17 17 C 1.36935 * 120.62908 * 126.39948 * 16 15 14 18 18 H 1.07996 * 120.00650 * 328.60074 * 17 16 15 19 19 C 1.38814 * 119.99685 * 148.60058 * 17 16 15 20 20 N 1.31627 * 120.00089 * 165.01207 * 19 17 16 21 21 Si 1.86803 * 120.00061 * 345.01799 * 19 17 16 22 22 H 1.48494 * 109.47300 * 90.82777 * 21 19 17 23 23 H 1.48504 * 109.47025 * 210.82793 * 21 19 17 24 24 H 1.48495 * 109.47092 * 330.82714 * 21 19 17 25 25 C 1.46924 * 118.73890 * 306.37956 * 16 15 14 26 26 C 1.53046 * 109.45906 * 154.97088 * 13 12 10 27 27 C 1.47905 * 105.81846 * 39.12463 * 6 5 4 28 28 H 1.09004 * 109.46920 * 297.90526 * 1 2 3 29 29 H 1.08996 * 109.46946 * 57.90434 * 1 2 3 30 30 H 1.08994 * 109.47223 * 177.90711 * 1 2 3 31 31 H 1.09002 * 109.46962 * 182.09013 * 3 2 1 32 32 H 1.08988 * 109.47451 * 302.09380 * 3 2 1 33 33 H 1.09007 * 109.46977 * 62.09482 * 3 2 1 34 34 H 1.08998 * 110.64711 * 144.57119 * 4 2 1 35 35 H 1.08995 * 110.87542 * 21.23133 * 4 2 1 36 36 H 1.09009 * 110.66366 * 204.28373 * 5 4 2 37 37 H 1.08996 * 110.67253 * 81.32655 * 5 4 2 38 38 H 1.09003 * 109.47163 * 303.83563 * 7 6 5 39 39 H 1.09004 * 109.46937 * 63.83435 * 7 6 5 40 40 H 1.08998 * 109.47072 * 305.26181 * 8 7 6 41 41 H 1.09005 * 109.46650 * 65.25802 * 8 7 6 42 42 H 0.97003 * 120.00082 * 0.02562 * 9 8 7 43 43 H 0.96999 * 119.99487 * 0.02562 * 12 10 9 44 44 H 1.08998 * 109.46699 * 34.99722 * 13 12 10 45 45 H 1.08999 * 109.49841 * 298.56963 * 14 13 12 46 46 H 1.09000 * 109.49331 * 58.66411 * 14 13 12 47 47 H 1.08995 * 109.60348 * 294.86883 * 15 14 13 48 48 H 1.09005 * 109.69868 * 174.50890 * 15 14 13 49 49 H 0.97000 * 119.99804 * 180.02562 * 20 19 17 50 50 H 1.09000 * 109.58495 * 293.82800 * 25 16 15 51 51 H 1.08996 * 109.70714 * 173.46680 * 25 16 15 52 52 H 1.08995 * 109.49602 * 301.33255 * 26 13 12 53 53 H 1.09004 * 109.49471 * 61.40381 * 26 13 12 54 54 H 1.09010 * 109.91455 * 94.01984 * 27 6 5 55 55 H 1.08989 * 109.92093 * 215.12012 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 6 2.0632 -0.7743 -1.2297 5 6 2.3583 -2.1803 -0.6497 6 7 2.8809 -1.8886 0.7097 7 6 2.7668 -3.0655 1.5814 8 6 3.2248 -2.6998 2.9947 9 7 3.2304 -3.9015 3.8325 10 6 3.6025 -3.8199 5.1253 11 8 3.9331 -2.7489 5.5964 12 7 3.6081 -4.9256 5.8960 13 6 4.0120 -4.8368 7.3014 14 6 5.5359 -4.9368 7.4012 15 6 5.9569 -4.8085 8.8685 16 7 5.2335 -5.8149 9.6576 17 6 5.9122 -6.6884 10.4647 18 1 6.9055 -7.0141 10.1934 19 6 5.3233 -7.1554 11.6318 20 7 5.8288 -8.2010 12.2513 21 14 3.8134 -6.3001 12.3232 22 1 2.5893 -6.9313 11.7682 23 1 3.8076 -6.4253 13.8029 24 1 3.8431 -4.8635 11.9482 25 6 3.7681 -5.8659 9.5645 26 6 3.3715 -5.9819 8.0893 27 6 2.0646 -0.7673 1.2235 28 1 -0.3633 0.4810 0.9082 29 1 -0.3633 0.5460 -0.8706 30 1 -0.3633 -1.0269 -0.0375 31 1 3.1495 1.4201 -0.0375 32 1 1.6740 1.9652 -0.8705 33 1 1.7349 1.9427 0.9082 34 1 2.9759 -0.3136 -1.6078 35 1 1.3058 -0.8307 -2.0115 36 1 3.1104 -2.6935 -1.2490 37 1 1.4449 -2.7721 -0.5919 38 1 1.7289 -3.3970 1.6102 39 1 3.3939 -3.8678 1.1925 40 1 4.2301 -2.2806 2.9538 41 1 2.5414 -1.9642 3.4191 42 1 2.9670 -4.7560 3.4566 43 1 3.3447 -5.7801 5.5201 44 1 3.6829 -3.8833 7.7144 45 1 5.8635 -5.9005 7.0114 46 1 5.9919 -4.1349 6.8206 47 1 5.7106 -3.8116 9.2338 48 1 7.0303 -4.9759 8.9588 49 1 5.4171 -8.5275 13.0667 50 1 3.3433 -4.9551 9.9864 51 1 3.3949 -6.7311 10.1123 52 1 2.2869 -5.9239 7.9985 53 1 3.7194 -6.9357 7.6925 54 1 1.2324 -1.1533 1.8124 55 1 2.6805 -0.1104 1.8374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892879316.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:50 Heat of formation + Delta-G solvation = -35.144835 kcal Electronic energy + Delta-G solvation = -29734.637345 eV Core-core repulsion = 25805.588416 eV Total energy + Delta-G solvation = -3929.048929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.27720 -40.52366 -39.32717 -36.77026 -35.95283 -34.80660 -33.99401 -32.02253 -31.93863 -30.99020 -28.85344 -28.20101 -26.95267 -26.27512 -24.53380 -23.70125 -23.11538 -22.13847 -21.78837 -21.21062 -19.97447 -19.46913 -18.66111 -17.67416 -17.14438 -17.07764 -16.52262 -16.34522 -15.94907 -15.53453 -15.51009 -15.37903 -15.27808 -14.96051 -14.70696 -14.53407 -14.49963 -14.25246 -14.20495 -13.79067 -13.76929 -13.73794 -13.46167 -12.83517 -12.69102 -12.61037 -12.53720 -12.42842 -12.26732 -12.24960 -12.11466 -12.00544 -11.76808 -11.60536 -11.53915 -11.51243 -11.42492 -11.38047 -11.29275 -10.72519 -10.34490 -9.76889 -9.42087 -8.90047 -8.15346 -5.54106 1.29768 1.43204 1.51908 1.62778 2.16421 2.41761 2.94304 3.10274 3.28927 3.43016 3.54284 3.67391 3.78709 3.86990 3.94992 4.00197 4.08117 4.24074 4.33074 4.33813 4.36902 4.44433 4.46975 4.49645 4.60708 4.64028 4.68537 4.74326 4.79180 4.83624 4.87072 4.88747 4.91379 4.92938 4.95220 5.04764 5.06213 5.08285 5.09368 5.17104 5.18183 5.30512 5.34639 5.39641 5.44674 5.46186 5.56934 5.88810 5.89960 6.01024 6.03841 6.14442 6.91835 7.12314 7.60229 7.60554 8.02853 9.04463 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.031458 B = 0.001725 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.868137 B =16227.856612 C =16407.715210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.112 4.112 5 C 0.036 3.964 6 N -0.526 5.526 7 C 0.047 3.953 8 C 0.148 3.852 9 N -0.731 5.731 10 C 0.701 3.299 11 O -0.636 6.636 12 N -0.726 5.726 13 C 0.179 3.821 14 C -0.128 4.128 15 C 0.147 3.853 16 N -0.619 5.619 17 C -0.249 4.249 18 H 0.050 0.950 19 C -0.033 4.033 20 N -0.959 5.959 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.312 1.312 24 H -0.264 1.264 25 C 0.119 3.881 26 C -0.126 4.126 27 C 0.040 3.960 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.413 0.587 43 H 0.411 0.589 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.027 0.973 48 H 0.057 0.943 49 H 0.262 0.738 50 H 0.032 0.968 51 H 0.060 0.940 52 H 0.090 0.910 53 H 0.074 0.926 54 H 0.044 0.956 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.087 13.135 -32.030 37.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.079 4.079 3 C -0.192 4.192 4 C -0.150 4.150 5 C -0.091 4.091 6 N -0.251 5.251 7 C -0.081 4.081 8 C 0.023 3.977 9 N -0.389 5.389 10 C 0.400 3.600 11 O -0.517 6.517 12 N -0.381 5.381 13 C 0.073 3.927 14 C -0.168 4.168 15 C 0.022 3.978 16 N -0.344 5.344 17 C -0.379 4.379 18 H 0.068 0.932 19 C -0.228 4.228 20 N -0.605 5.605 21 Si 0.780 3.220 22 H -0.193 1.193 23 H -0.241 1.241 24 H -0.188 1.188 25 C -0.006 4.006 26 C -0.165 4.165 27 C -0.088 4.088 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.249 0.751 43 H 0.247 0.753 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.045 0.955 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.050 0.950 51 H 0.078 0.922 52 H 0.108 0.892 53 H 0.093 0.907 54 H 0.063 0.937 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.242 14.151 -31.509 36.992 hybrid contribution -1.191 -0.864 0.858 1.703 sum -14.433 13.287 -30.651 36.392 Atomic orbital electron populations 1.21886 0.93383 1.01793 1.02301 1.21479 0.95972 0.95942 0.94481 1.21831 1.00783 0.94581 1.02044 1.22656 1.01535 0.94118 0.96641 1.23277 0.99023 0.97704 0.89133 1.64705 1.51835 1.05681 1.02893 1.22326 1.00794 0.93993 0.91011 1.21004 1.01169 0.86247 0.89321 1.44801 1.72718 1.12812 1.08537 1.16103 0.78147 0.84050 0.81674 1.90906 1.57046 1.29485 1.74260 1.45070 1.72128 1.09915 1.10940 1.20506 0.93739 0.98869 0.79543 1.22211 0.96114 1.01477 0.96996 1.21008 0.96056 0.90765 0.90020 1.44468 1.01825 1.37005 1.51106 1.18838 1.00845 1.18049 1.00125 0.93203 1.26020 1.01867 0.98181 0.96740 1.69921 1.44478 1.25522 1.20629 0.85869 0.80262 0.80092 0.75791 1.19277 1.24108 1.18850 1.21422 0.84040 0.99184 0.95989 1.22155 1.00936 0.98295 0.95143 1.23067 0.95427 0.93355 0.96939 0.92793 0.91439 0.92760 0.92843 0.91663 0.92829 0.90847 0.89573 0.89339 0.92946 0.92899 0.88689 0.92815 0.93158 0.75082 0.75279 0.91658 0.91834 0.92061 0.95455 0.92393 0.92903 0.95032 0.92223 0.89196 0.90696 0.93724 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.20 71.98 0.59 -0.59 16 2 C -0.08 -0.81 0.97 -51.23 -0.05 -0.86 16 3 C -0.13 -1.40 8.24 71.98 0.59 -0.81 16 4 C -0.11 -0.98 6.18 31.86 0.20 -0.79 16 5 C 0.04 0.35 6.55 86.65 0.57 0.91 16 6 N -0.53 -7.14 5.35 -883.02 -4.73 -11.87 16 7 C 0.05 0.57 4.93 86.30 0.43 1.00 16 8 C 0.15 2.70 5.44 86.38 0.47 3.17 16 9 N -0.73 -13.20 5.56 -478.54 -2.66 -15.86 16 10 C 0.70 18.89 8.53 179.05 1.53 20.42 16 11 O -0.64 -23.57 16.01 -3.98 -0.06 -23.63 16 12 N -0.73 -17.31 5.08 -457.68 -2.33 -19.64 16 13 C 0.18 5.52 2.42 45.02 0.11 5.63 16 14 C -0.13 -4.35 5.65 30.67 0.17 -4.18 16 15 C 0.15 6.02 6.52 86.36 0.56 6.58 16 16 N -0.62 -29.31 2.74 -699.10 -1.91 -31.23 16 17 C -0.25 -14.20 10.04 84.03 0.84 -13.36 16 18 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 19 C -0.03 -1.95 5.31 84.86 0.45 -1.50 16 20 N -0.96 -60.33 13.97 21.65 0.30 -60.03 16 21 Si 0.95 46.61 24.29 68.60 1.67 48.28 16 22 H -0.27 -12.02 6.61 99.48 0.66 -11.36 16 23 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 24 H -0.26 -12.58 6.44 99.48 0.64 -11.94 16 25 C 0.12 4.91 4.16 86.36 0.36 5.27 16 26 C -0.13 -3.89 5.55 30.68 0.17 -3.72 16 27 C 0.04 0.55 4.80 86.45 0.42 0.97 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.07 0.71 7.85 -2.39 -0.02 0.69 16 35 H 0.09 0.54 7.85 -2.39 -0.02 0.52 16 36 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.05 0.44 7.94 -2.39 -0.02 0.42 16 38 H 0.05 0.53 8.00 -2.39 -0.02 0.51 16 39 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.07 7.17 -2.38 -0.02 1.05 16 42 H 0.41 4.41 8.49 -92.71 -0.79 3.62 16 43 H 0.41 6.90 8.62 -92.71 -0.80 6.10 16 44 H 0.07 2.31 7.58 -2.39 -0.02 2.29 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 48 H 0.06 2.41 7.93 -2.38 -0.02 2.39 16 49 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 50 H 0.03 1.30 6.87 -2.39 -0.02 1.28 16 51 H 0.06 2.66 4.60 -2.39 -0.01 2.65 16 52 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 53 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 54 H 0.04 0.63 7.00 -2.38 -0.02 0.62 16 55 H 0.07 1.14 7.69 -2.39 -0.02 1.12 16 Total: -1.00 -73.88 414.56 -3.15 -77.03 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.84 Total: 18.82 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 7.40 Total: 18.13 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -11.32 Total: -138.63 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.67 Total: 48.28 kcal Total: -73.88 -3.15 -77.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879316.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.890 kcal (2) G-P(sol) polarization free energy of solvation -73.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds