Wall clock time and date at job start Tue Mar 31 2020 22:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00308 * 2 1 4 4 C 1.50693 * 108.87237 * 63.15753 * 3 2 1 5 5 O 1.21293 * 119.99819 * 216.73136 * 4 3 2 6 6 N 1.34772 * 120.00420 * 36.73648 * 4 3 2 7 7 C 1.46494 * 120.00378 * 184.02949 * 6 4 3 8 8 C 1.52998 * 109.47632 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.52345 * 305.08163 * 8 7 6 10 10 C 1.53034 * 109.50327 * 184.99915 * 8 7 6 11 11 C 1.53039 * 109.53200 * 178.68921 * 10 8 7 12 12 C 1.53167 * 109.32685 * 61.36897 * 11 10 8 13 13 N 1.46927 * 108.76925 * 305.36031 * 12 11 10 14 14 C 1.36939 * 120.62897 * 233.58812 * 13 12 11 15 15 H 1.07997 * 119.99714 * 143.97326 * 14 13 12 16 16 C 1.38810 * 119.99710 * 323.96872 * 14 13 12 17 17 N 1.31614 * 120.00562 * 0.07865 * 16 14 13 18 18 Si 1.86800 * 119.99615 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46901 * 60.00344 * 18 16 14 20 20 H 1.48505 * 109.46955 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47644 * 300.00199 * 18 16 14 22 22 C 1.46930 * 118.73929 * 53.60530 * 13 12 11 23 23 C 1.54245 * 108.89584 * 181.76472 * 3 2 1 24 24 C 1.50553 * 108.48338 * 40.58437 * 23 3 2 25 25 C 1.54070 * 112.41210 * 94.26978 * 24 23 3 26 26 C 1.54058 * 112.81754 * 318.27762 * 25 24 23 27 27 C 1.50478 * 112.49503 * 318.28332 * 26 25 24 28 28 C 1.45547 * 108.89295 * 304.55233 * 3 2 1 29 29 H 1.08998 * 109.46660 * 306.04292 * 1 2 3 30 30 H 1.08993 * 109.47215 * 66.04223 * 1 2 3 31 31 H 1.08998 * 109.47160 * 186.04454 * 1 2 3 32 32 H 0.96999 * 119.99561 * 4.02211 * 6 4 3 33 33 H 1.09002 * 109.47482 * 59.99365 * 7 6 4 34 34 H 1.09006 * 109.47052 * 299.99760 * 7 6 4 35 35 H 1.09007 * 109.46069 * 298.70069 * 10 8 7 36 36 H 1.09000 * 109.46301 * 58.67083 * 10 8 7 37 37 H 1.08999 * 109.49688 * 181.30745 * 11 10 8 38 38 H 1.09003 * 109.49726 * 301.40699 * 11 10 8 39 39 H 1.08996 * 109.58747 * 185.57209 * 12 11 10 40 40 H 1.09006 * 109.70634 * 65.21205 * 12 11 10 41 41 H 0.96994 * 120.00461 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.58634 * 186.60761 * 22 13 12 43 43 H 1.09004 * 109.70007 * 66.25263 * 22 13 12 44 44 H 1.08999 * 109.62740 * 160.38292 * 23 3 2 45 45 H 1.09002 * 109.62540 * 280.96168 * 23 3 2 46 46 H 1.09001 * 108.92429 * 333.51297 * 24 23 3 47 47 H 1.09000 * 108.83510 * 214.96150 * 24 23 3 48 48 H 1.09000 * 108.80835 * 197.41725 * 25 24 23 49 49 H 1.08999 * 108.81270 * 79.14036 * 25 24 23 50 50 H 1.09001 * 108.87942 * 197.51195 * 26 25 24 51 51 H 1.08997 * 108.88139 * 79.06134 * 26 25 24 52 52 H 1.08996 * 109.63153 * 334.44911 * 27 26 25 53 53 H 1.09000 * 109.63171 * 213.86510 * 27 26 25 54 54 H 1.08999 * 108.89301 * 62.03771 * 28 3 2 55 55 H 1.08995 * 108.88979 * 180.52488 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6204 2.0126 1.2723 5 8 1.3878 3.2029 1.2576 6 7 1.5302 1.3226 2.4264 7 6 1.0661 1.9904 3.6449 8 6 1.0563 0.9903 4.8027 9 1 0.4586 0.1211 4.5282 10 6 0.4549 1.6522 6.0445 11 6 0.4148 0.6424 7.1938 12 6 1.8417 0.1966 7.5270 13 7 2.4774 -0.3083 6.3023 14 6 3.0467 -1.5534 6.2741 15 1 2.9853 -2.1551 5.3794 16 6 3.7028 -2.0420 7.3956 17 7 3.7763 -1.3094 8.4864 18 14 4.4801 -3.7402 7.3568 19 1 5.5107 -3.7886 6.2887 20 1 5.1144 -4.0243 8.6692 21 1 3.4338 -4.7575 7.0816 22 6 2.4908 0.5483 5.1086 23 6 3.5460 1.1684 -0.0449 24 6 3.8984 0.0576 -0.9981 25 6 4.1910 0.5742 -2.4198 26 6 3.2060 1.6691 -2.8721 27 6 1.7856 1.3630 -2.4810 28 6 1.4886 2.0536 -1.1342 29 1 -0.3632 0.6047 0.8310 30 1 -0.3633 0.4173 -0.9391 31 1 -0.3633 -1.0219 0.1082 32 1 1.7725 0.3836 2.4503 33 1 0.0579 2.3737 3.4877 34 1 1.7357 2.8168 3.8838 35 1 1.0672 2.5066 6.3332 36 1 -0.5573 1.9896 5.8220 37 1 -0.0350 1.1075 8.0711 38 1 -0.1770 -0.2234 6.8968 39 1 1.8118 -0.5946 8.2761 40 1 2.4108 1.0429 7.9118 41 1 4.2351 -1.6507 9.2699 42 1 2.8893 -0.0110 4.2621 43 1 3.1120 1.4249 5.2924 44 1 3.9871 2.1033 -0.3905 45 1 3.9215 0.9288 0.9499 46 1 3.0677 -0.6467 -1.0428 47 1 4.7805 -0.4614 -0.6231 48 1 4.1315 -0.2618 -3.1167 49 1 5.2026 0.9791 -2.4454 50 1 3.2601 1.7661 -3.9564 51 1 3.4999 2.6165 -2.4201 52 1 1.6589 0.2856 -2.3757 53 1 1.1059 1.7416 -3.2443 54 1 0.4095 2.1584 -1.0215 55 1 1.9390 3.0461 -1.1395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895410532.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:38 Heat of formation + Delta-G solvation = -98.830401 kcal Electronic energy + Delta-G solvation = -31869.406061 eV Core-core repulsion = 27905.302768 eV Total energy + Delta-G solvation = -3964.103293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.22551 -39.88605 -39.02714 -37.26043 -36.27312 -34.68178 -33.22412 -32.63848 -32.28192 -31.78064 -27.78370 -27.42344 -27.16664 -25.97378 -25.35315 -23.84509 -22.79919 -22.04105 -21.03893 -20.50814 -20.13806 -18.95488 -18.53893 -17.77356 -17.11989 -16.87134 -16.58774 -16.37202 -15.97449 -15.85401 -15.52902 -15.32574 -15.05442 -14.80289 -14.54064 -14.43684 -14.11161 -14.03501 -13.92779 -13.76413 -13.71733 -13.49628 -13.08042 -13.06125 -12.80658 -12.75165 -12.55149 -12.35407 -12.32883 -12.00789 -11.96948 -11.88072 -11.83816 -11.57452 -11.40059 -11.33869 -11.28039 -11.13615 -11.12451 -10.97546 -10.52546 -10.35726 -10.09547 -8.54462 -7.85969 -5.43423 1.43905 1.47507 1.49374 1.55783 2.07058 2.49993 2.65336 3.30134 3.46083 3.58764 3.63662 3.84302 3.97925 3.98380 4.03878 4.08265 4.17591 4.21260 4.33932 4.37534 4.40447 4.44854 4.46544 4.54041 4.55850 4.60729 4.74274 4.75335 4.84917 4.86263 4.87915 4.90072 4.93221 5.01174 5.03628 5.09683 5.15806 5.22623 5.24728 5.28769 5.32726 5.36399 5.37359 5.38257 5.45704 5.52787 5.59782 5.66556 5.67226 5.83196 5.97803 6.44811 6.49159 7.10382 7.18444 7.85461 8.40828 9.18516 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.003113 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.512942 B = 8993.819810 C =10398.383016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.368 6.368 3 C 0.124 3.876 4 C 0.488 3.512 5 O -0.576 6.576 6 N -0.710 5.710 7 C 0.136 3.864 8 C -0.099 4.099 9 H 0.074 0.926 10 C -0.096 4.096 11 C -0.131 4.131 12 C 0.173 3.827 13 N -0.610 5.610 14 C -0.267 4.267 15 H 0.066 0.934 16 C -0.044 4.044 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.275 1.275 20 H -0.295 1.295 21 H -0.274 1.274 22 C 0.155 3.845 23 C -0.098 4.098 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.105 4.105 28 C -0.137 4.137 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.411 0.589 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.056 0.944 40 H -0.010 1.010 41 H 0.250 0.750 42 H 0.052 0.948 43 H 0.004 0.996 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.072 0.928 51 H 0.054 0.946 52 H 0.076 0.924 53 H 0.076 0.924 54 H 0.063 0.937 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 4.345 -22.038 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.287 6.287 3 C 0.081 3.919 4 C 0.274 3.726 5 O -0.456 6.456 6 N -0.361 5.361 7 C 0.012 3.988 8 C -0.120 4.120 9 H 0.093 0.907 10 C -0.134 4.134 11 C -0.170 4.170 12 C 0.047 3.953 13 N -0.333 5.333 14 C -0.397 4.397 15 H 0.084 0.916 16 C -0.240 4.240 17 N -0.581 5.581 18 Si 0.796 3.204 19 H -0.201 1.201 20 H -0.221 1.221 21 H -0.200 1.200 22 C 0.030 3.970 23 C -0.136 4.136 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.142 4.142 28 C -0.174 4.174 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.009 0.991 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.022 0.978 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.073 0.927 52 H 0.095 0.905 53 H 0.095 0.905 54 H 0.082 0.918 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.302 4.961 -21.872 23.296 hybrid contribution 0.582 -0.792 0.926 1.351 sum -5.720 4.168 -20.945 22.109 Atomic orbital electron populations 1.23025 0.80267 1.04052 1.00672 1.87994 1.20613 1.25462 1.94651 1.20369 0.96764 0.83882 0.90864 1.21921 0.76487 0.87449 0.86767 1.90671 1.51405 1.16469 1.87060 1.46099 1.66217 1.15132 1.08647 1.21301 0.99574 0.94946 0.83019 1.21706 0.98235 0.97791 0.94229 0.90717 1.21331 1.00798 0.97431 0.93868 1.22016 0.98023 0.98575 0.98368 1.20669 0.89556 0.95990 0.89041 1.44192 1.65547 1.14673 1.08891 1.19441 1.27674 0.92941 0.99671 0.91617 1.26076 0.98644 1.02235 0.97058 1.70103 1.46141 1.38540 1.03283 0.85346 0.78715 0.79876 0.76504 1.20118 1.22129 1.19971 1.20983 0.93826 0.92693 0.89529 1.21387 0.89523 1.01607 1.01096 1.21211 1.02402 0.97639 0.94302 1.21909 0.98959 0.98630 0.95655 1.21369 0.94440 0.98684 1.01329 1.21225 0.97222 1.01416 0.94327 1.20937 1.01546 0.99994 0.94973 0.94963 0.92201 0.87531 0.75213 0.90963 0.92617 0.92762 0.90237 0.91349 0.92968 0.92562 0.99147 0.94082 0.92910 0.97821 0.89777 0.91813 0.90024 0.91853 0.91391 0.92073 0.90958 0.92690 0.90549 0.90507 0.91806 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.96 113.37 1.13 1.40 16 2 O -0.37 -7.39 6.80 -148.98 -1.01 -8.40 16 3 C 0.12 2.67 0.57 -13.40 -0.01 2.66 16 4 C 0.49 13.39 5.21 87.66 0.46 13.85 16 5 O -0.58 -19.49 16.00 -3.07 -0.05 -19.54 16 6 N -0.71 -19.00 4.82 -463.07 -2.23 -21.23 16 7 C 0.14 3.84 5.07 86.38 0.44 4.28 16 8 C -0.10 -3.15 2.37 -10.72 -0.03 -3.18 16 9 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 10 C -0.10 -3.00 5.17 30.62 0.16 -2.84 16 11 C -0.13 -4.82 6.08 30.66 0.19 -4.63 16 12 C 0.17 8.41 5.23 86.35 0.45 8.86 16 13 N -0.61 -30.40 2.99 -699.12 -2.09 -32.48 16 14 C -0.27 -14.52 9.55 84.03 0.80 -13.72 16 15 H 0.07 3.44 7.83 -2.91 -0.02 3.42 16 16 C -0.04 -2.47 5.25 84.86 0.45 -2.02 16 17 N -0.94 -55.25 10.84 21.65 0.23 -55.01 16 18 Si 0.97 44.35 29.55 68.60 2.03 46.38 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.16 6.31 5.60 86.36 0.48 6.80 16 23 C -0.10 -2.02 4.86 30.22 0.15 -1.87 16 24 C -0.12 -2.05 5.25 30.16 0.16 -1.89 16 25 C -0.11 -1.59 5.85 31.31 0.18 -1.41 16 26 C -0.12 -1.64 5.31 30.14 0.16 -1.48 16 27 C -0.10 -1.51 5.38 30.20 0.16 -1.35 16 28 C -0.14 -2.64 3.01 28.74 0.09 -2.55 16 29 H 0.03 0.63 6.78 -2.39 -0.02 0.61 16 30 H 0.06 0.86 6.57 -2.39 -0.02 0.85 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.41 10.65 7.24 -92.71 -0.67 9.98 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.06 3.11 6.12 -2.39 -0.01 3.10 16 40 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.05 2.07 7.14 -2.39 -0.02 2.06 16 43 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 44 H 0.08 1.67 6.97 -2.39 -0.02 1.66 16 45 H 0.06 1.45 7.97 -2.39 -0.02 1.43 16 46 H 0.08 1.52 5.46 -2.39 -0.01 1.50 16 47 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 49 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.05 0.82 6.63 -2.39 -0.02 0.81 16 52 H 0.08 1.14 6.24 -2.39 -0.01 1.12 16 53 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.06 1.27 6.47 -2.39 -0.02 1.26 16 55 H 0.07 1.58 7.12 -2.39 -0.02 1.57 16 Total: -1.00 -65.47 401.00 2.49 -62.99 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.19 Total: 26.41 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.42 Total: 0.89 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.08 Total: -108.73 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.06 Total: -27.94 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -65.47 2.49 -62.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895410532.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.843 kcal (2) G-P(sol) polarization free energy of solvation -65.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds