Wall clock time and date at job start Tue Mar 31 2020 22:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99847 * 2 1 4 4 C 1.50706 * 108.79286 * 302.46404 * 3 2 1 5 5 O 1.21279 * 120.00055 * 143.72274 * 4 3 2 6 6 N 1.34775 * 119.99771 * 323.72080 * 4 3 2 7 7 C 1.46500 * 119.99712 * 184.49702 * 6 4 3 8 8 C 1.53003 * 109.46985 * 180.02562 * 7 6 4 9 9 H 1.09008 * 109.49736 * 55.06710 * 8 7 6 10 10 C 1.53037 * 109.50050 * 175.16107 * 8 7 6 11 11 C 1.53035 * 109.54150 * 181.31996 * 10 8 7 12 12 C 1.53201 * 109.31102 * 298.63492 * 11 10 8 13 13 N 1.46923 * 108.77229 * 54.63759 * 12 11 10 14 14 C 1.36940 * 120.63199 * 126.41175 * 13 12 11 15 15 H 1.07994 * 119.99805 * 329.37797 * 14 13 12 16 16 C 1.38813 * 120.00089 * 149.37845 * 14 13 12 17 17 N 1.31616 * 120.00297 * 162.54200 * 16 14 13 18 18 Si 1.86803 * 119.99845 * 342.54050 * 16 14 13 19 19 H 1.48507 * 109.47050 * 89.63416 * 18 16 14 20 20 H 1.48502 * 109.47103 * 209.63143 * 18 16 14 21 21 H 1.48493 * 109.47453 * 329.63690 * 18 16 14 22 22 C 1.46929 * 118.73870 * 306.38852 * 13 12 11 23 23 C 1.45545 * 108.89613 * 183.90961 * 3 2 1 24 24 C 1.54245 * 112.39777 * 301.17948 * 23 3 2 25 25 C 1.50479 * 108.52488 * 280.01429 * 24 23 3 26 26 C 1.54062 * 112.49644 * 94.15329 * 25 24 23 27 27 C 1.54066 * 112.81719 * 318.28266 * 26 25 24 28 28 C 1.50472 * 112.49598 * 318.28494 * 27 26 25 29 29 H 1.09000 * 109.46855 * 185.32367 * 1 2 3 30 30 H 1.08998 * 109.47269 * 305.32176 * 1 2 3 31 31 H 1.08997 * 109.47467 * 65.32190 * 1 2 3 32 32 H 0.97002 * 119.99894 * 4.50415 * 6 4 3 33 33 H 1.08997 * 109.47523 * 300.00292 * 7 6 4 34 34 H 1.08998 * 109.47106 * 60.00592 * 7 6 4 35 35 H 1.09000 * 109.46210 * 301.34087 * 10 8 7 36 36 H 1.09004 * 109.45297 * 61.29877 * 10 8 7 37 37 H 1.08997 * 109.50029 * 178.68601 * 11 10 8 38 38 H 1.08999 * 109.50082 * 58.58477 * 11 10 8 39 39 H 1.08992 * 109.58850 * 294.84795 * 12 11 10 40 40 H 1.09000 * 109.70201 * 174.49168 * 12 11 10 41 41 H 0.97002 * 120.00228 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.58733 * 293.82491 * 22 13 12 43 43 H 1.09006 * 109.58768 * 173.39772 * 22 13 12 44 44 H 1.09001 * 108.89484 * 61.93145 * 23 3 2 45 45 H 1.09000 * 108.89668 * 180.42558 * 23 3 2 46 46 H 1.08997 * 109.62916 * 39.72935 * 24 23 3 47 47 H 1.09000 * 109.62586 * 160.30979 * 24 23 3 48 48 H 1.08997 * 108.87517 * 333.37605 * 25 24 23 49 49 H 1.09001 * 108.79626 * 214.87705 * 25 24 23 50 50 H 1.09002 * 108.81382 * 197.41884 * 26 25 24 51 51 H 1.09004 * 108.72495 * 79.08456 * 26 25 24 52 52 H 1.09001 * 108.87589 * 197.50586 * 27 26 25 53 53 H 1.09004 * 108.87760 * 79.06288 * 27 26 25 54 54 H 1.08995 * 109.62978 * 334.44085 * 28 27 26 55 55 H 1.08999 * 109.78917 * 213.95894 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5080 2.0605 -1.2038 5 8 1.2867 3.2502 -1.1244 6 7 1.3049 1.4134 -2.3685 7 6 0.9117 2.1633 -3.5640 8 6 0.7467 1.1983 -4.7399 9 1 0.0412 0.4126 -4.4695 10 6 0.2200 1.9617 -5.9572 11 6 0.0235 0.9914 -7.1242 12 6 1.3712 0.3633 -7.4933 13 7 1.9527 -0.2489 -6.2910 14 6 2.3480 -1.5599 -6.2971 15 1 1.8364 -2.2752 -6.9239 16 6 3.4063 -1.9695 -5.4976 17 7 3.5736 -3.2475 -5.2312 18 14 4.5930 -0.7068 -4.7999 19 1 4.0953 -0.2345 -3.4829 20 1 5.9317 -1.3266 -4.6299 21 1 4.6953 0.4445 -5.7321 22 6 2.1025 0.5725 -5.0820 23 6 3.4569 1.1773 -0.0939 24 6 4.0510 0.3566 1.0691 25 6 4.1608 1.2482 2.2763 26 6 2.9351 1.1390 3.2033 27 6 1.6040 1.0834 2.4296 28 6 1.5675 2.0494 1.2765 29 1 -0.3633 -1.0232 0.0954 30 1 -0.3634 0.5941 0.8385 31 1 -0.3634 0.4290 -0.9338 32 1 1.4190 0.4513 -2.4151 33 1 -0.0331 2.6740 -3.3782 34 1 1.6812 2.8978 -3.8016 35 1 -0.7331 2.4285 -5.7086 36 1 0.9378 2.7312 -6.2416 37 1 -0.3737 1.5316 -7.9835 38 1 -0.6753 0.2076 -6.8319 39 1 2.0422 1.1343 -7.8718 40 1 1.2238 -0.4001 -8.2573 41 1 4.3134 -3.5338 -4.6728 42 1 2.8332 1.3607 -5.2638 43 1 2.4354 -0.0533 -4.2539 44 1 3.7077 0.6883 -1.0352 45 1 3.9007 2.1728 -0.0862 46 1 3.3970 -0.4858 1.2944 47 1 5.0402 -0.0080 0.7922 48 1 4.2604 2.2814 1.9437 49 1 5.0532 0.9712 2.8375 50 1 2.9194 2.0024 3.8685 51 1 3.0304 0.2346 3.8044 52 1 0.7886 1.3194 3.1134 53 1 1.4600 0.0727 2.0477 54 1 2.2476 2.8785 1.4717 55 1 0.5545 2.4300 1.1458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895410533.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:42 Heat of formation + Delta-G solvation = -95.104980 kcal Electronic energy + Delta-G solvation = -32630.484169 eV Core-core repulsion = 28666.542422 eV Total energy + Delta-G solvation = -3963.941747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.30119 -40.06664 -39.18691 -37.33536 -36.26970 -34.84550 -33.61988 -32.84103 -32.46310 -32.02122 -27.89311 -27.62703 -27.16098 -25.81668 -25.63264 -24.14967 -22.71730 -22.17192 -21.23396 -20.72335 -20.15782 -18.99335 -18.76030 -17.94217 -17.33895 -17.08562 -16.63506 -16.52149 -16.06808 -15.76604 -15.69823 -15.41647 -15.10251 -14.93073 -14.81211 -14.58710 -14.43261 -14.37037 -14.00341 -13.94447 -13.77563 -13.47209 -13.37726 -13.11309 -13.09626 -12.85000 -12.60573 -12.36946 -12.23857 -12.12150 -12.11669 -11.87222 -11.70965 -11.63473 -11.49964 -11.39643 -11.30836 -11.28680 -11.18862 -11.11861 -10.67369 -10.42040 -10.19343 -8.89001 -8.18468 -5.53645 1.24201 1.33551 1.36704 1.44384 1.99329 2.37021 2.67504 3.03978 3.29326 3.35415 3.57212 3.70393 3.79538 3.88000 3.94947 4.01450 4.13156 4.17993 4.27018 4.27810 4.29803 4.39597 4.40671 4.42269 4.44349 4.46496 4.56468 4.67562 4.69268 4.72426 4.81381 4.83682 4.86521 4.88089 4.95508 4.99679 5.06385 5.08078 5.15380 5.19401 5.21011 5.25534 5.27450 5.29574 5.33173 5.34773 5.45475 5.56351 5.59472 5.88109 5.89421 6.12767 6.35445 6.91574 6.97882 7.60510 8.02865 9.01369 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012969 B = 0.004094 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.427126 B = 6837.719545 C = 8050.145767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.373 6.373 3 C 0.120 3.880 4 C 0.489 3.511 5 O -0.566 6.566 6 N -0.720 5.720 7 C 0.129 3.871 8 C -0.105 4.105 9 H 0.073 0.927 10 C -0.098 4.098 11 C -0.124 4.124 12 C 0.137 3.863 13 N -0.620 5.620 14 C -0.250 4.250 15 H 0.052 0.948 16 C -0.024 4.024 17 N -0.953 5.953 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.312 1.312 21 H -0.273 1.273 22 C 0.132 3.868 23 C -0.118 4.118 24 C -0.105 4.105 25 C -0.120 4.120 26 C -0.112 4.112 27 C -0.125 4.125 28 C -0.114 4.114 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.407 0.593 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.030 0.970 40 H 0.053 0.947 41 H 0.262 0.738 42 H 0.021 0.979 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.073 0.927 53 H 0.076 0.924 54 H 0.080 0.920 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 12.029 14.482 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.292 6.292 3 C 0.078 3.922 4 C 0.275 3.725 5 O -0.445 6.445 6 N -0.371 5.371 7 C 0.005 3.995 8 C -0.126 4.126 9 H 0.091 0.909 10 C -0.136 4.136 11 C -0.163 4.163 12 C 0.012 3.988 13 N -0.345 5.345 14 C -0.380 4.380 15 H 0.070 0.930 16 C -0.219 4.219 17 N -0.598 5.598 18 Si 0.771 3.229 19 H -0.194 1.194 20 H -0.241 1.241 21 H -0.198 1.198 22 C 0.006 3.994 23 C -0.156 4.156 24 C -0.143 4.143 25 C -0.157 4.157 26 C -0.149 4.149 27 C -0.162 4.162 28 C -0.152 4.152 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.243 0.757 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.092 0.908 53 H 0.094 0.906 54 H 0.099 0.901 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.044 12.591 14.550 20.169 hybrid contribution 0.827 -0.277 -0.226 0.901 sum -5.216 12.314 14.324 19.597 Atomic orbital electron populations 1.23102 0.80085 1.04515 1.00893 1.88088 1.21047 1.25718 1.94312 1.20559 0.95328 0.83830 0.92516 1.21840 0.76990 0.88048 0.85667 1.90649 1.52335 1.16338 1.85176 1.46311 1.68828 1.12278 1.09713 1.21448 1.00781 0.94024 0.83222 1.21792 0.98092 0.97617 0.95073 0.90880 1.21376 1.01630 0.97286 0.93303 1.21884 0.97031 0.98576 0.98792 1.21193 0.93671 0.95864 0.88046 1.44468 1.73175 1.08541 1.08284 1.18866 1.10345 0.84376 1.24432 0.92977 1.25868 0.98969 0.96846 1.00250 1.69915 1.32790 1.16083 1.41049 0.86025 0.78468 0.79460 0.78964 1.19352 1.24138 1.19821 1.21372 0.95550 0.93320 0.89112 1.20566 0.91906 1.02209 1.00924 1.21182 1.00811 0.98651 0.93656 1.21379 0.98719 0.99542 0.96069 1.21879 0.93065 1.02412 0.97564 1.21364 0.98382 1.00410 0.96081 1.21618 1.02133 0.98780 0.92673 0.87549 0.91891 0.94493 0.75733 0.90046 0.92090 0.89663 0.91590 0.89200 0.92808 0.95149 0.92804 0.92913 0.96087 0.93240 0.93106 0.89816 0.90629 0.91408 0.92307 0.90947 0.91431 0.91446 0.90816 0.90559 0.90148 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.58 113.37 1.09 1.30 16 2 O -0.37 -9.61 7.10 -148.98 -1.06 -10.66 16 3 C 0.12 3.11 0.55 -13.40 -0.01 3.10 16 4 C 0.49 14.91 5.32 87.66 0.47 15.38 16 5 O -0.57 -19.68 16.11 -3.02 -0.05 -19.73 16 6 N -0.72 -22.15 4.34 -463.06 -2.01 -24.16 16 7 C 0.13 3.75 5.07 86.38 0.44 4.19 16 8 C -0.11 -3.32 2.38 -10.72 -0.03 -3.35 16 9 H 0.07 2.42 8.14 -2.38 -0.02 2.41 16 10 C -0.10 -2.57 5.17 30.62 0.16 -2.41 16 11 C -0.12 -3.53 6.08 30.67 0.19 -3.35 16 12 C 0.14 5.11 6.52 86.37 0.56 5.67 16 13 N -0.62 -28.64 2.73 -699.09 -1.91 -30.55 16 14 C -0.25 -14.08 10.03 84.03 0.84 -13.24 16 15 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 16 C -0.02 -1.38 5.27 84.86 0.45 -0.94 16 17 N -0.95 -59.19 13.97 21.65 0.30 -58.89 16 18 Si 0.94 46.83 24.32 68.60 1.67 48.50 16 19 H -0.27 -12.36 6.54 99.48 0.65 -11.71 16 20 H -0.31 -15.90 7.11 99.48 0.71 -15.20 16 21 H -0.27 -13.40 6.71 99.48 0.67 -12.73 16 22 C 0.13 5.40 3.27 86.36 0.28 5.68 16 23 C -0.12 -3.10 4.11 28.74 0.12 -2.98 16 24 C -0.11 -2.30 5.57 30.20 0.17 -2.13 16 25 C -0.12 -2.06 5.31 30.14 0.16 -1.90 16 26 C -0.11 -1.71 5.85 31.31 0.18 -1.53 16 27 C -0.13 -2.17 4.51 30.14 0.14 -2.04 16 28 C -0.11 -2.46 3.49 30.20 0.11 -2.35 16 29 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.14 6.05 -2.39 -0.01 1.13 16 31 H 0.04 0.86 6.53 -2.39 -0.02 0.84 16 32 H 0.41 13.22 6.93 -92.71 -0.64 12.58 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.02 0.89 7.04 -2.39 -0.02 0.87 16 43 H 0.05 2.24 3.83 -2.38 -0.01 2.23 16 44 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 45 H 0.08 2.10 7.47 -2.39 -0.02 2.08 16 46 H 0.08 1.74 6.25 -2.39 -0.01 1.72 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.06 1.03 6.63 -2.39 -0.02 1.02 16 49 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.07 0.94 8.14 -2.38 -0.02 0.93 16 52 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.08 1.48 5.02 -2.39 -0.01 1.46 16 54 H 0.08 1.75 6.98 -2.39 -0.02 1.73 16 55 H 0.07 1.48 7.15 -2.39 -0.02 1.47 16 Total: -1.00 -67.99 393.28 2.38 -65.61 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.13 Total: 30.77 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.31 Total: -0.89 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -3.62 Total: -113.60 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.11 Total: -30.39 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.67 Total: 48.50 kcal Total: -67.99 2.38 -65.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895410533.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.496 kcal (2) G-P(sol) polarization free energy of solvation -67.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds