Wall clock time and date at job start Tue Mar 31 2020 22:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 110.99969 * 2 1 4 4 C 1.46905 * 111.00287 * 123.95806 * 2 1 3 5 5 C 1.52993 * 109.47102 * 66.04255 * 4 2 1 6 6 C 1.53003 * 109.47167 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.47539 * 180.02562 * 6 5 4 8 8 C 1.46493 * 120.00106 * 89.99781 * 7 6 5 9 9 C 1.50696 * 109.47469 * 264.51028 * 8 7 6 10 10 H 1.08000 * 120.00138 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00267 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99831 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99821 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47006 * 90.00038 * 13 11 9 15 15 H 1.48498 * 109.47122 * 329.99911 * 13 11 9 16 16 H 1.48501 * 109.47237 * 209.99885 * 13 11 9 17 17 C 1.34775 * 119.99690 * 270.00516 * 7 6 5 18 18 O 1.21283 * 120.00630 * 3.72023 * 17 7 6 19 19 C 1.50700 * 119.99707 * 183.72425 * 17 7 6 20 20 H 1.08999 * 109.55441 * 313.80466 * 19 17 7 21 21 C 1.53159 * 109.55451 * 74.00264 * 19 17 7 22 22 C 1.53049 * 109.39378 * 178.47091 * 21 19 17 23 23 O 1.43039 * 109.44874 * 300.67590 * 22 21 19 24 24 C 1.42577 * 113.86269 * 58.73860 * 23 22 21 25 25 C 1.53396 * 113.62036 * 171.83559 * 24 23 22 26 26 C 1.53851 * 86.97024 * 220.08681 * 25 24 23 27 27 C 1.53412 * 113.58039 * 73.89336 * 24 23 22 28 28 C 1.52839 * 113.00359 * 302.96533 * 24 23 22 29 29 H 1.09003 * 109.46788 * 296.04492 * 1 2 3 30 30 H 1.08995 * 109.47500 * 56.04207 * 1 2 3 31 31 H 1.09004 * 109.47109 * 176.05058 * 1 2 3 32 32 H 1.09004 * 109.46840 * 183.95980 * 3 2 1 33 33 H 1.09002 * 109.47193 * 303.95540 * 3 2 1 34 34 H 1.08992 * 109.47250 * 63.95782 * 3 2 1 35 35 H 1.08998 * 109.46520 * 306.04255 * 4 2 1 36 36 H 1.09000 * 109.46781 * 186.04355 * 4 2 1 37 37 H 1.08998 * 109.47433 * 60.00558 * 5 4 2 38 38 H 1.09000 * 109.47384 * 299.99730 * 5 4 2 39 39 H 1.09006 * 109.46809 * 59.99719 * 6 5 4 40 40 H 1.09002 * 109.47016 * 300.00468 * 6 5 4 41 41 H 1.09000 * 109.47075 * 144.50569 * 8 7 6 42 42 H 1.09004 * 109.47000 * 24.50444 * 8 7 6 43 43 H 0.97001 * 119.99528 * 180.02562 * 12 11 9 44 44 H 1.08992 * 109.48363 * 298.45199 * 21 19 17 45 45 H 1.09004 * 109.47940 * 58.49859 * 21 19 17 46 46 H 1.09000 * 109.47032 * 60.66775 * 22 21 19 47 47 H 1.08993 * 109.47082 * 180.67571 * 22 21 19 48 48 H 1.09001 * 113.63384 * 334.60258 * 25 24 23 49 49 H 1.09000 * 113.63841 * 105.56546 * 25 24 23 50 50 H 1.09001 * 113.60081 * 270.58847 * 26 25 24 51 51 H 1.08999 * 113.67780 * 139.73914 * 26 25 24 52 52 H 1.08999 * 113.63859 * 254.47275 * 27 24 23 53 53 H 1.09003 * 113.63225 * 25.43549 * 27 24 23 54 54 H 1.08998 * 109.48707 * 293.99211 * 28 24 23 55 55 H 1.08994 * 109.64901 * 173.64243 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6315 -2.2426 0.9702 6 6 2.1793 -3.0404 2.1553 7 7 1.8313 -4.4544 1.9949 8 6 2.7401 -5.3562 1.2830 9 6 2.3099 -5.4692 -0.1569 10 1 1.4456 -4.9241 -0.5066 11 6 3.0190 -6.2693 -1.0276 12 7 2.6431 -6.3683 -2.2840 13 14 4.5134 -7.2127 -0.4226 14 1 4.0900 -8.5487 0.0684 15 1 5.1591 -6.4607 0.6832 16 1 5.4791 -7.3786 -1.5384 17 6 0.6750 -4.9255 2.5022 18 8 -0.1087 -4.1665 3.0322 19 6 0.3557 -6.3955 2.4111 20 1 0.5634 -6.7521 1.4023 21 6 1.2145 -7.1698 3.4154 22 6 0.8602 -8.6571 3.3466 23 8 -0.5268 -8.8308 3.6501 24 6 -1.4018 -8.1230 2.7748 25 6 -2.8831 -8.4665 2.9768 26 6 -3.0177 -8.4237 1.4448 27 6 -1.5162 -8.7525 1.3805 28 6 -1.1248 -6.6203 2.7402 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8523 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0828 1.3432 -0.0710 33 1 1.5897 1.9163 -0.8524 34 1 1.7044 1.8723 0.9232 35 1 1.5612 -0.3873 2.0627 36 1 3.0798 -0.6612 1.1755 37 1 2.0658 -2.6214 0.0451 38 1 0.5472 -2.3475 0.9323 39 1 1.7446 -2.6615 3.0804 40 1 3.2636 -2.9355 2.1938 41 1 2.7130 -6.3413 1.7487 42 1 3.7546 -4.9603 1.3289 43 1 3.1418 -6.9314 -2.8965 44 1 2.2684 -7.0355 3.1721 45 1 1.0229 -6.7965 4.4214 46 1 1.0626 -9.0329 2.3436 47 1 1.4622 -9.2078 4.0693 48 1 -3.0481 -9.4564 3.4023 49 1 -3.4472 -7.6857 3.4869 50 1 -3.2652 -7.4359 1.0559 51 1 -3.6544 -9.2098 1.0391 52 1 -0.9810 -8.2017 0.6070 53 1 -1.3033 -9.8214 1.3648 54 1 -1.3522 -6.1861 3.7137 55 1 -1.7439 -6.1511 1.9757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896890319.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:39 Heat of formation + Delta-G solvation = -79.652109 kcal Electronic energy + Delta-G solvation = -31941.684771 eV Core-core repulsion = 27978.413111 eV Total energy + Delta-G solvation = -3963.271660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90176 -40.51987 -38.67779 -37.33751 -36.94853 -35.02457 -34.52119 -32.85148 -30.52551 -29.85548 -28.54247 -27.74524 -26.74602 -25.86753 -24.83656 -24.38663 -23.71631 -22.17745 -21.76208 -19.90601 -19.51146 -18.97443 -18.11233 -17.61476 -17.28242 -16.85420 -16.59336 -16.41310 -16.23679 -15.94530 -15.70534 -15.63312 -15.35186 -14.99548 -14.73180 -14.47839 -14.26634 -14.16772 -13.91575 -13.58512 -13.44990 -13.28030 -13.21774 -13.19059 -12.91408 -12.74377 -12.59963 -12.55141 -12.42184 -12.25013 -12.18144 -12.11550 -11.98739 -11.92562 -11.72546 -11.62975 -11.51971 -11.48814 -11.09775 -10.77136 -10.62460 -10.27329 -9.46668 -9.31769 -8.26040 -6.32369 1.39618 1.41882 1.50413 1.66943 2.23756 2.35904 2.79794 3.02033 3.07493 3.47694 3.54280 3.60498 3.79015 3.82580 3.87182 3.92767 4.06416 4.09291 4.19823 4.23103 4.32818 4.40975 4.44698 4.47366 4.48565 4.54098 4.59753 4.62838 4.63151 4.70057 4.72068 4.76716 4.77650 4.78482 4.81982 4.85045 4.94040 4.97920 4.98206 5.01535 5.03552 5.09656 5.13060 5.23270 5.33787 5.37467 5.40649 5.47810 5.72757 6.03503 6.12491 6.21752 6.30157 6.58394 6.73549 7.23950 7.35200 8.90107 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008893 B = 0.004228 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.807420 B = 6621.636247 C = 8296.570389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.571 5.571 3 C 0.027 3.973 4 C 0.069 3.931 5 C -0.115 4.115 6 C 0.122 3.878 7 N -0.593 5.593 8 C 0.211 3.789 9 C -0.530 4.530 10 H 0.027 0.973 11 C 0.021 3.979 12 N -0.942 5.942 13 Si 0.931 3.069 14 H -0.258 1.258 15 H -0.236 1.236 16 H -0.289 1.289 17 C 0.522 3.478 18 O -0.590 6.590 19 C -0.106 4.106 20 H 0.091 0.909 21 C -0.141 4.141 22 C 0.063 3.937 23 O -0.374 6.374 24 C 0.087 3.913 25 C -0.110 4.110 26 C -0.132 4.132 27 C -0.168 4.168 28 C -0.094 4.094 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.266 0.734 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.049 0.951 47 H 0.122 0.878 48 H 0.102 0.898 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.050 0.950 53 H 0.095 0.905 54 H 0.072 0.928 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 1.388 10.914 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.295 5.295 3 C -0.121 4.121 4 C -0.059 4.059 5 C -0.154 4.154 6 C -0.001 4.001 7 N -0.322 5.322 8 C 0.090 3.910 9 C -0.569 4.569 10 H 0.046 0.954 11 C -0.178 4.178 12 N -0.581 5.581 13 Si 0.754 3.246 14 H -0.182 1.182 15 H -0.159 1.159 16 H -0.216 1.216 17 C 0.311 3.689 18 O -0.473 6.473 19 C -0.128 4.128 20 H 0.109 0.891 21 C -0.179 4.179 22 C -0.013 4.013 23 O -0.293 6.293 24 C 0.048 3.952 25 C -0.147 4.147 26 C -0.170 4.170 27 C -0.206 4.206 28 C -0.132 4.132 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.140 0.860 48 H 0.121 0.879 49 H 0.099 0.901 50 H 0.096 0.904 51 H 0.111 0.889 52 H 0.069 0.931 53 H 0.113 0.887 54 H 0.091 0.909 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.783 1.381 10.741 11.182 hybrid contribution 0.410 0.348 -0.382 0.659 sum -2.373 1.729 10.360 10.768 Atomic orbital electron populations 1.22361 0.87352 1.01482 1.00956 1.61906 1.08468 1.15251 1.43900 1.22414 1.01148 0.87408 1.01091 1.21983 1.00694 0.92079 0.91181 1.21747 0.99680 0.95016 0.98991 1.21414 1.00846 0.80098 0.97783 1.47958 1.20546 1.10082 1.53617 1.19841 0.90002 0.90565 0.90617 1.21428 1.13385 1.27887 0.94181 0.95440 1.25739 1.00356 0.97184 0.94505 1.70067 1.42017 1.40444 1.05587 0.85956 0.79257 0.80250 0.79161 1.18210 1.15897 1.21555 1.20743 0.80481 0.90965 0.76664 1.90561 1.48623 1.60296 1.47788 1.21304 0.97422 0.91782 1.02245 0.89104 1.22198 1.00314 0.96662 0.98718 1.22644 0.82418 0.94304 1.01956 1.87876 1.16120 1.69628 1.55718 1.22795 0.91789 0.90218 0.90421 1.22985 0.91519 1.03442 0.96798 1.22696 0.95563 1.02611 0.96103 1.23555 0.98272 1.01714 0.97029 1.21538 0.94175 0.94990 1.02467 0.95036 0.90241 0.93432 0.90687 0.90589 0.94903 0.94228 0.89386 0.93047 0.94658 0.90666 0.88819 0.93052 0.93466 0.92489 0.89359 0.90611 0.93231 0.85991 0.87917 0.90135 0.90448 0.88932 0.93125 0.88699 0.90945 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.32 127.69 1.19 1.94 16 2 N -0.57 -16.66 5.02 -948.87 -4.76 -21.43 16 3 C 0.03 0.58 9.57 127.69 1.22 1.80 16 4 C 0.07 2.00 4.96 86.30 0.43 2.43 16 5 C -0.12 -4.25 5.46 30.59 0.17 -4.09 16 6 C 0.12 4.23 5.42 86.38 0.47 4.70 16 7 N -0.59 -23.61 2.47 -826.16 -2.04 -25.65 16 8 C 0.21 8.81 3.90 85.63 0.33 9.15 16 9 C -0.53 -27.72 9.01 25.60 0.23 -27.49 16 10 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 11 C 0.02 1.12 5.47 84.65 0.46 1.58 16 12 N -0.94 -55.61 13.96 21.45 0.30 -55.31 16 13 Si 0.93 38.86 27.47 68.60 1.88 40.74 16 14 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 15 H -0.24 -8.71 6.54 99.48 0.65 -8.06 16 16 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 17 C 0.52 21.36 6.85 87.66 0.60 21.96 16 18 O -0.59 -26.36 15.51 -3.04 -0.05 -26.41 16 19 C -0.11 -3.87 1.68 -11.38 -0.02 -3.89 16 20 H 0.09 3.79 6.35 -2.39 -0.02 3.77 16 21 C -0.14 -4.22 5.09 30.66 0.16 -4.06 16 22 C 0.06 1.69 6.74 72.00 0.49 2.17 16 23 O -0.37 -10.88 10.53 -148.98 -1.57 -12.45 16 24 C 0.09 2.52 1.16 -10.58 -0.01 2.51 16 25 C -0.11 -2.56 7.50 31.01 0.23 -2.33 16 26 C -0.13 -3.12 7.73 31.16 0.24 -2.88 16 27 C -0.17 -4.78 6.90 31.02 0.21 -4.56 16 28 C -0.09 -3.13 3.95 30.65 0.12 -3.01 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 31 H 0.05 1.56 6.47 -2.39 -0.02 1.55 16 32 H 0.07 1.49 8.12 -2.38 -0.02 1.47 16 33 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 34 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 36 H 0.09 2.27 8.06 -2.39 -0.02 2.25 16 37 H 0.05 2.27 7.99 -2.39 -0.02 2.25 16 38 H 0.03 1.47 6.55 -2.39 -0.02 1.45 16 39 H 0.07 2.53 7.48 -2.38 -0.02 2.51 16 40 H 0.09 2.79 7.86 -2.39 -0.02 2.77 16 41 H 0.05 1.99 4.03 -2.39 -0.01 1.98 16 42 H 0.05 1.87 6.89 -2.38 -0.02 1.86 16 43 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.09 2.54 5.84 -2.39 -0.01 2.53 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.05 1.40 7.84 -2.39 -0.02 1.38 16 47 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 50 H 0.08 1.92 7.61 -2.39 -0.02 1.90 16 51 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 52 H 0.05 1.71 7.57 -2.39 -0.02 1.69 16 53 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 54 H 0.07 2.49 7.78 -2.39 -0.02 2.47 16 55 H 0.06 2.29 7.31 -2.39 -0.02 2.27 16 Total: -1.00 -66.44 415.98 1.07 -65.37 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: 0.79 Total: 39.21 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.52 Total: -4.07 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -6.50 Total: -102.39 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -1.62 Total: -38.86 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.88 Total: 40.74 kcal Total: -66.44 1.07 -65.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896890319.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.286 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds