Wall clock time and date at job start Tue Mar 31 2020 22:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00275 * 2 1 4 4 C 1.46905 * 110.99543 * 123.95446 * 2 1 3 5 5 C 1.52996 * 109.47278 * 66.04673 * 4 2 1 6 6 C 1.52999 * 109.47438 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47304 * 179.97438 * 6 5 4 8 8 C 1.46497 * 119.99838 * 90.40402 * 7 6 5 9 9 C 1.50701 * 109.47334 * 92.86270 * 8 7 6 10 10 H 1.07998 * 120.00019 * 357.79758 * 9 8 7 11 11 C 1.37880 * 120.00396 * 177.79036 * 9 8 7 12 12 N 1.31517 * 119.99604 * 5.45844 * 11 9 8 13 13 Si 1.86797 * 120.00314 * 185.45593 * 11 9 8 14 14 H 1.48497 * 109.47164 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.47052 * 60.00138 * 13 11 9 16 16 H 1.48494 * 109.46728 * 300.00359 * 13 11 9 17 17 C 1.34775 * 120.00024 * 270.40266 * 7 6 5 18 18 O 1.21276 * 119.99763 * 0.02562 * 17 7 6 19 19 C 1.50699 * 119.99999 * 179.97438 * 17 7 6 20 20 C 1.52997 * 109.47137 * 180.02562 * 19 17 7 21 21 H 1.09005 * 110.29731 * 305.70295 * 20 19 17 22 22 C 1.54546 * 110.33272 * 183.55482 * 20 19 17 23 23 C 1.54719 * 104.06817 * 217.44861 * 22 20 19 24 24 C 1.53551 * 103.75703 * 0.69819 * 23 22 20 25 25 C 1.52818 * 115.46307 * 253.20636 * 24 23 22 26 26 C 1.53957 * 86.78826 * 217.65259 * 25 24 23 27 27 C 1.52801 * 115.49258 * 152.49616 * 24 23 22 28 28 O 1.43446 * 106.19650 * 22.75466 * 24 23 22 29 29 H 1.09007 * 109.47297 * 296.05081 * 1 2 3 30 30 H 1.08999 * 109.46817 * 56.04349 * 1 2 3 31 31 H 1.08999 * 109.47822 * 176.04761 * 1 2 3 32 32 H 1.09002 * 109.47071 * 183.95110 * 3 2 1 33 33 H 1.08999 * 109.47197 * 303.95052 * 3 2 1 34 34 H 1.09002 * 109.46614 * 63.95412 * 3 2 1 35 35 H 1.08990 * 109.47147 * 306.04116 * 4 2 1 36 36 H 1.09006 * 109.46807 * 186.04511 * 4 2 1 37 37 H 1.09007 * 109.47452 * 59.99491 * 5 4 2 38 38 H 1.09006 * 109.47070 * 299.99678 * 5 4 2 39 39 H 1.08997 * 109.46715 * 59.99694 * 6 5 4 40 40 H 1.09006 * 109.46793 * 299.99928 * 6 5 4 41 41 H 1.09001 * 109.47488 * 332.86332 * 8 7 6 42 42 H 1.08999 * 109.47139 * 212.86296 * 8 7 6 43 43 H 0.97002 * 120.00070 * 354.82464 * 12 11 9 44 44 H 1.08994 * 109.47443 * 300.00349 * 19 17 7 45 45 H 1.09007 * 109.46798 * 60.00420 * 19 17 7 46 46 H 1.08997 * 110.50847 * 336.09218 * 22 20 19 47 47 H 1.09003 * 110.50992 * 98.66499 * 22 20 19 48 48 H 1.09002 * 110.57108 * 119.26666 * 23 22 20 49 49 H 1.09004 * 110.57008 * 241.97727 * 23 22 20 50 50 H 1.09002 * 113.66137 * 332.13124 * 25 24 23 51 51 H 1.09003 * 113.65940 * 103.18005 * 25 24 23 52 52 H 1.08999 * 113.59083 * 270.12072 * 26 25 24 53 53 H 1.09004 * 113.58346 * 139.30418 * 26 25 24 54 54 H 1.09001 * 113.66314 * 256.80165 * 27 24 23 55 55 H 1.09010 * 113.65677 * 27.84545 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9704 6 6 2.1800 -3.0406 2.1549 7 7 1.8310 -4.4544 1.9950 8 6 2.7426 -5.3587 1.2898 9 6 3.6610 -6.0218 2.2837 10 1 3.5982 -5.7661 3.3311 11 6 4.5813 -6.9551 1.8560 12 7 4.7323 -7.1885 0.5705 13 14 5.6138 -7.8880 3.1022 14 1 6.5202 -8.8254 2.3916 15 1 4.7221 -8.6535 4.0100 16 1 6.4204 -6.9262 3.8957 17 6 0.6712 -4.9230 2.4968 18 8 -0.0836 -4.1742 3.0802 19 6 0.3118 -6.3772 2.3318 20 6 -1.0448 -6.6448 2.9866 21 1 -1.0357 -6.3125 4.0248 22 6 -1.3921 -8.1486 2.9072 23 6 -2.9182 -8.1692 2.6530 24 6 -3.2984 -6.6827 2.5927 25 6 -4.0587 -6.1492 3.8062 26 6 -4.8750 -5.3016 2.8135 27 6 -4.5247 -6.3515 1.7434 28 8 -2.0970 -5.9758 2.2540 29 1 -0.3634 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3635 -1.0252 -0.0708 32 1 3.0828 1.3431 -0.0708 33 1 1.5899 1.9163 -0.8525 34 1 1.7044 1.8723 0.9233 35 1 1.5610 -0.3873 2.0628 36 1 3.0797 -0.6612 1.1757 37 1 2.0656 -2.6214 0.0451 38 1 0.5470 -2.3475 0.9323 39 1 1.7460 -2.6619 3.0803 40 1 3.2644 -2.9357 2.1925 41 1 3.3339 -4.7910 0.5713 42 1 2.1653 -6.1196 0.7647 43 1 4.1454 -6.7604 -0.0723 44 1 0.2568 -6.6198 1.2706 45 1 1.0733 -6.9958 2.8069 46 1 -0.8609 -8.6201 2.0805 47 1 -1.1527 -8.6460 3.8471 48 1 -3.1421 -8.6605 1.7061 49 1 -3.4364 -8.6664 3.4730 50 1 -4.6479 -6.9079 4.3215 51 1 -3.4424 -5.5575 4.4831 52 1 -4.4426 -4.3200 2.6195 53 1 -5.9383 -5.2572 3.0493 54 1 -4.2808 -5.9215 0.7719 55 1 -5.2450 -7.1671 1.6784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896890760.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:06 Heat of formation + Delta-G solvation = -84.948308 kcal Electronic energy + Delta-G solvation = -31079.575676 eV Core-core repulsion = 27116.074355 eV Total energy + Delta-G solvation = -3963.501321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.62675 -40.71030 -38.74306 -37.40424 -36.89491 -35.01817 -33.52641 -32.99994 -31.60424 -28.83901 -28.56662 -27.70637 -26.75997 -26.19029 -24.98870 -24.04029 -23.06262 -21.99939 -21.84034 -20.27307 -20.19946 -18.93194 -18.10088 -17.51794 -17.09962 -16.73815 -16.54730 -16.47183 -16.27195 -15.92844 -15.63064 -15.55578 -15.33917 -15.05817 -14.87428 -14.45852 -14.14217 -13.91048 -13.67921 -13.59626 -13.37753 -13.31664 -13.22777 -13.11082 -12.97418 -12.85337 -12.63977 -12.57078 -12.52665 -12.43268 -12.29202 -12.22963 -11.92418 -11.87782 -11.70356 -11.63856 -11.36556 -11.21093 -11.05367 -10.74311 -10.52197 -10.45643 -9.49755 -9.40335 -8.62403 -6.41705 1.56864 1.61806 1.71707 1.82472 2.18561 2.56869 2.75989 2.96237 3.13721 3.49602 3.57241 3.61896 3.75617 3.85930 3.89350 3.99995 4.00564 4.05620 4.13550 4.15307 4.26702 4.32105 4.36392 4.41466 4.42653 4.50556 4.54078 4.58701 4.63291 4.67987 4.71207 4.76075 4.77170 4.81156 4.83338 4.89609 4.90873 4.93307 4.95620 4.98752 5.02358 5.03594 5.15288 5.16385 5.18440 5.31286 5.43260 5.66411 5.82833 5.95714 6.04453 6.09748 6.12121 6.48131 6.61755 7.26155 7.39152 8.71841 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.005798 B = 0.004706 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4827.892567 B = 5948.488534 C =10181.005018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.564 5.564 3 C 0.025 3.975 4 C 0.067 3.933 5 C -0.112 4.112 6 C 0.123 3.877 7 N -0.598 5.598 8 C 0.243 3.757 9 C -0.620 4.620 10 H 0.045 0.955 11 C -0.016 4.016 12 N -0.926 5.926 13 Si 1.109 2.891 14 H -0.283 1.283 15 H -0.268 1.268 16 H -0.277 1.277 17 C 0.514 3.486 18 O -0.583 6.583 19 C -0.124 4.124 20 C 0.099 3.901 21 H 0.057 0.943 22 C -0.149 4.149 23 C -0.129 4.129 24 C 0.058 3.942 25 C -0.153 4.153 26 C -0.134 4.134 27 C -0.121 4.121 28 O -0.365 6.365 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.013 0.987 42 H 0.022 0.978 43 H 0.260 0.740 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.115 0.885 51 H 0.049 0.951 52 H 0.056 0.944 53 H 0.091 0.909 54 H 0.061 0.939 55 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.897 3.915 2.773 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.288 5.288 3 C -0.123 4.123 4 C -0.061 4.061 5 C -0.151 4.151 6 C -0.001 4.001 7 N -0.328 5.328 8 C 0.121 3.879 9 C -0.659 4.659 10 H 0.064 0.936 11 C -0.216 4.216 12 N -0.563 5.563 13 Si 0.931 3.069 14 H -0.208 1.208 15 H -0.193 1.193 16 H -0.202 1.202 17 C 0.303 3.697 18 O -0.465 6.465 19 C -0.163 4.163 20 C 0.041 3.959 21 H 0.075 0.925 22 C -0.186 4.186 23 C -0.167 4.167 24 C 0.019 3.981 25 C -0.190 4.190 26 C -0.172 4.172 27 C -0.158 4.158 28 O -0.285 6.285 29 H 0.045 0.955 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.031 0.969 42 H 0.040 0.960 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.129 0.871 46 H 0.096 0.904 47 H 0.112 0.888 48 H 0.104 0.896 49 H 0.119 0.881 50 H 0.134 0.866 51 H 0.068 0.932 52 H 0.075 0.925 53 H 0.109 0.891 54 H 0.079 0.921 55 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.860 3.186 2.619 14.460 hybrid contribution -0.976 1.636 0.418 1.950 sum -14.836 4.822 3.037 15.893 Atomic orbital electron populations 1.22412 0.87097 1.01869 1.01025 1.61960 1.08586 1.15135 1.43135 1.22438 1.01171 0.87473 1.01187 1.21949 1.00614 0.92094 0.91481 1.21738 1.00219 0.95019 0.98105 1.21271 1.00074 0.80444 0.98290 1.48050 1.19537 1.09774 1.55468 1.19164 0.88210 0.88383 0.92126 1.22477 1.22267 1.25977 0.95141 0.93620 1.27051 0.98160 0.96370 1.00014 1.70925 1.37986 1.45515 1.01829 0.83010 0.75259 0.75650 0.72939 1.20845 1.19326 1.20226 1.20804 0.80327 0.90939 0.77585 1.90579 1.51000 1.60109 1.44800 1.21716 0.97605 0.93519 1.03510 1.22668 0.86182 0.92426 0.94649 0.92511 1.23033 0.97362 0.94265 1.03983 1.22751 0.94657 0.95197 1.04056 1.22997 0.86492 0.91263 0.97386 1.23374 0.98799 1.00416 0.96432 1.22767 1.00771 0.97210 0.96428 1.22965 0.95191 1.00045 0.97631 1.89052 1.16334 1.55589 1.67508 0.95517 0.89760 0.92801 0.90789 0.90058 0.95216 0.94611 0.89770 0.92436 0.93400 0.91586 0.90607 0.96913 0.96015 0.93064 0.89071 0.87112 0.90407 0.88793 0.89577 0.88085 0.86639 0.93211 0.92500 0.89062 0.92064 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.32 127.69 1.19 1.79 16 2 N -0.56 -14.96 5.02 -948.84 -4.76 -19.72 16 3 C 0.02 0.50 9.57 127.69 1.22 1.72 16 4 C 0.07 1.92 4.96 86.30 0.43 2.35 16 5 C -0.11 -3.92 5.46 30.59 0.17 -3.75 16 6 C 0.12 4.82 5.39 86.38 0.47 5.29 16 7 N -0.60 -26.59 2.46 -826.17 -2.03 -28.63 16 8 C 0.24 11.77 4.25 85.63 0.36 12.14 16 9 C -0.62 -32.47 9.00 25.60 0.23 -32.24 16 10 H 0.05 2.45 7.82 -2.91 -0.02 2.42 16 11 C -0.02 -0.83 5.45 84.65 0.46 -0.37 16 12 N -0.93 -52.47 13.65 21.45 0.29 -52.18 16 13 Si 1.11 47.04 29.91 68.60 2.05 49.09 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 16 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 17 C 0.51 22.89 7.57 87.66 0.66 23.56 16 18 O -0.58 -28.05 15.15 6.14 0.09 -27.96 16 19 C -0.12 -4.81 3.92 29.85 0.12 -4.70 16 20 C 0.10 3.34 2.76 31.12 0.09 3.42 16 21 H 0.06 2.06 7.96 -2.38 -0.02 2.04 16 22 C -0.15 -3.75 6.65 31.71 0.21 -3.54 16 23 C -0.13 -2.67 6.48 31.37 0.20 -2.47 16 24 C 0.06 1.50 1.13 -10.74 -0.01 1.49 16 25 C -0.15 -3.46 7.57 30.86 0.23 -3.23 16 26 C -0.13 -2.92 8.09 31.23 0.25 -2.67 16 27 C -0.12 -2.56 7.61 30.85 0.23 -2.32 16 28 O -0.37 -13.09 10.60 -139.83 -1.48 -14.58 16 29 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 31 H 0.05 1.53 6.47 -2.39 -0.02 1.52 16 32 H 0.07 1.39 8.12 -2.39 -0.02 1.38 16 33 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 34 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.04 1.01 8.12 -2.39 -0.02 0.99 16 36 H 0.08 2.25 8.06 -2.38 -0.02 2.23 16 37 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.05 1.83 6.55 -2.38 -0.02 1.81 16 39 H 0.07 2.63 7.43 -2.39 -0.02 2.61 16 40 H 0.08 2.93 8.07 -2.38 -0.02 2.91 16 41 H 0.01 0.65 7.90 -2.39 -0.02 0.64 16 42 H 0.02 1.08 6.45 -2.39 -0.02 1.07 16 43 H 0.26 14.77 7.25 -92.71 -0.67 14.10 16 44 H 0.09 3.54 7.40 -2.39 -0.02 3.52 16 45 H 0.11 4.39 7.75 -2.38 -0.02 4.37 16 46 H 0.08 1.97 7.87 -2.39 -0.02 1.95 16 47 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 49 H 0.10 1.57 7.85 -2.38 -0.02 1.55 16 50 H 0.12 1.88 7.97 -2.39 -0.02 1.86 16 51 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 53 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 54 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 55 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -66.34 429.96 1.60 -64.74 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.92 Total: 32.77 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 6.52 Total: -3.54 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -6.50 Total: -100.53 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.39 Total: -42.53 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.05 Total: 49.09 kcal Total: -66.34 1.60 -64.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896890760.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.212 kcal (2) G-P(sol) polarization free energy of solvation -66.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds