Wall clock time and date at job start Tue Mar 31 2020 22:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00524 * 2 1 4 4 C 1.46906 * 110.99746 * 123.95118 * 2 1 3 5 5 C 1.53002 * 109.47053 * 169.99658 * 4 2 1 6 6 C 1.52996 * 109.46891 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47185 * 180.02562 * 6 5 4 8 8 C 1.46509 * 120.00213 * 270.00285 * 7 6 5 9 9 C 1.50699 * 109.47073 * 89.99612 * 8 7 6 10 10 H 1.08007 * 120.00307 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00079 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99955 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00320 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46613 * 90.00104 * 13 11 9 15 15 H 1.48499 * 109.47682 * 210.00122 * 13 11 9 16 16 H 1.48498 * 109.47236 * 330.00784 * 13 11 9 17 17 C 1.34780 * 120.00229 * 89.99654 * 7 6 5 18 18 O 1.21278 * 119.99793 * 0.02562 * 17 7 6 19 19 C 1.50695 * 119.99987 * 180.02562 * 17 7 6 20 20 C 1.53006 * 109.46783 * 180.02562 * 19 17 7 21 21 H 1.08996 * 109.84813 * 54.05514 * 20 19 17 22 22 C 1.54175 * 109.85353 * 174.99893 * 20 19 17 23 23 C 1.55005 * 104.26457 * 121.24071 * 22 20 19 24 24 C 1.53903 * 101.91842 * 19.79202 * 23 22 20 25 25 C 1.52640 * 115.54959 * 195.00375 * 24 23 22 26 26 C 1.53988 * 86.73592 * 217.58041 * 25 24 23 27 27 C 1.52653 * 115.54203 * 93.99033 * 24 23 22 28 28 O 1.43096 * 105.11250 * 324.50550 * 24 23 22 29 29 H 1.08993 * 109.47051 * 296.05424 * 1 2 3 30 30 H 1.09002 * 109.46471 * 56.04596 * 1 2 3 31 31 H 1.08994 * 109.47227 * 176.04191 * 1 2 3 32 32 H 1.08998 * 109.47452 * 183.95577 * 3 2 1 33 33 H 1.09000 * 109.46497 * 303.95201 * 3 2 1 34 34 H 1.09001 * 109.46901 * 63.94983 * 3 2 1 35 35 H 1.08992 * 109.47459 * 289.99741 * 4 2 1 36 36 H 1.09004 * 109.47040 * 49.99892 * 4 2 1 37 37 H 1.09001 * 109.47142 * 300.00160 * 5 4 2 38 38 H 1.09004 * 109.47006 * 60.00213 * 5 4 2 39 39 H 1.09001 * 109.47372 * 300.00036 * 6 5 4 40 40 H 1.08996 * 109.47261 * 60.00575 * 6 5 4 41 41 H 1.08998 * 109.46962 * 209.99966 * 8 7 6 42 42 H 1.08997 * 109.46691 * 330.00092 * 8 7 6 43 43 H 0.97003 * 120.00165 * 179.97438 * 12 11 9 44 44 H 1.09002 * 109.47575 * 300.00391 * 19 17 7 45 45 H 1.09000 * 109.47392 * 60.00790 * 19 17 7 46 46 H 1.08998 * 110.47234 * 239.93825 * 22 20 19 47 47 H 1.09002 * 110.47429 * 2.41699 * 22 20 19 48 48 H 1.09000 * 110.93501 * 137.94663 * 23 22 20 49 49 H 1.08998 * 110.94366 * 261.63400 * 23 22 20 50 50 H 1.08996 * 113.67381 * 332.03835 * 25 24 23 51 51 H 1.09005 * 113.66795 * 103.12095 * 25 24 23 52 52 H 1.09004 * 113.58126 * 269.98789 * 26 25 24 53 53 H 1.09001 * 113.65351 * 139.20579 * 26 25 24 54 54 H 1.09003 * 113.66220 * 256.88807 * 27 24 23 55 55 H 1.08997 * 113.66873 * 27.87373 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9554 0.9704 6 6 4.0527 -1.7526 2.1556 7 7 5.4976 -1.9336 1.9959 8 6 6.0150 -3.1048 1.2839 9 6 6.1477 -2.7832 -0.1824 10 1 5.8745 -1.8041 -0.5475 11 6 6.6180 -3.7388 -1.0580 12 7 6.9502 -4.9312 -0.6136 13 14 6.7818 -3.3405 -2.8756 14 1 8.1346 -2.7884 -3.1413 15 1 6.5867 -4.5778 -3.6732 16 1 5.7546 -2.3383 -3.2573 17 6 6.3512 -1.0224 2.5038 18 8 5.9230 -0.0530 3.0934 19 6 7.8375 -1.2083 2.3389 20 6 8.5739 -0.0428 3.0025 21 1 8.2511 0.0570 4.0387 22 6 10.0953 -0.2863 2.9492 23 6 10.6509 0.9360 2.1746 24 6 9.5070 1.9546 2.3255 25 6 9.5650 3.1540 1.3831 26 6 9.0405 3.9941 2.5623 27 6 9.6410 2.9262 3.4952 28 8 8.3068 1.1764 2.2849 29 1 -0.3633 0.4513 0.9232 30 1 -0.3632 0.5740 -0.8525 31 1 -0.3633 -1.0251 -0.0709 32 1 3.0829 1.3431 -0.0709 33 1 1.5899 1.9162 -0.8525 34 1 1.7044 1.8723 0.9233 35 1 1.7975 -0.2248 2.0628 36 1 1.5088 -1.7407 1.1757 37 1 3.7023 -1.4967 0.0452 38 1 3.9909 0.0192 0.9324 39 1 3.8548 -1.2109 3.0806 40 1 3.5663 -2.7273 2.1941 41 1 6.9916 -3.3729 1.6870 42 1 5.3272 -3.9407 1.4117 43 1 7.2807 -5.6037 -1.2296 44 1 8.1410 -2.1440 2.8085 45 1 8.0845 -1.2375 1.2776 46 1 10.5114 -0.3209 3.9560 47 1 10.3150 -1.2107 2.4149 48 1 11.5660 1.3066 2.6364 49 1 10.8174 0.6898 1.1259 50 1 10.5758 3.4184 1.0729 51 1 8.8674 3.0885 0.5481 52 1 7.9529 4.0509 2.6076 53 1 9.5189 4.9695 2.6511 54 1 9.0041 2.6789 4.3445 55 1 10.6733 3.1249 3.7829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896890762.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:10 Heat of formation + Delta-G solvation = -80.110487 kcal Electronic energy + Delta-G solvation = -31367.733307 eV Core-core repulsion = 27404.441770 eV Total energy + Delta-G solvation = -3963.291537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59396 -40.59642 -38.67181 -37.36204 -36.71936 -34.71176 -33.52085 -32.95298 -31.46529 -29.23702 -28.53522 -27.71407 -26.76264 -26.14067 -24.79412 -23.91751 -23.09192 -21.99101 -21.77242 -20.16366 -19.87348 -18.61762 -17.99356 -17.30279 -17.10467 -16.75901 -16.52867 -16.39398 -16.34765 -16.00582 -15.83871 -15.47247 -15.29431 -14.90570 -14.54411 -14.36462 -14.07623 -13.73416 -13.58516 -13.43097 -13.33095 -13.26924 -13.13874 -13.09731 -12.87977 -12.82642 -12.66853 -12.55384 -12.49776 -12.42656 -12.38539 -12.27278 -11.92746 -11.89567 -11.64436 -11.61044 -11.46990 -11.31545 -10.99892 -10.68351 -10.48044 -10.35059 -9.43537 -9.32505 -8.18052 -6.29662 1.39196 1.42186 1.51634 1.81895 2.33992 2.45668 2.79667 3.03113 3.12458 3.52656 3.63819 3.73131 3.81588 3.90644 3.97360 4.03663 4.09411 4.14203 4.19526 4.22397 4.33971 4.40259 4.45325 4.49623 4.53826 4.60236 4.61658 4.64020 4.70350 4.74270 4.77465 4.78897 4.83210 4.92549 4.94719 4.95538 4.97981 4.99255 5.00998 5.04653 5.15597 5.18827 5.21670 5.25962 5.34805 5.41058 5.47190 5.70302 5.89066 6.03317 6.09868 6.12441 6.26042 6.60883 6.85513 7.35442 7.47124 8.87498 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007330 B = 0.004223 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.786310 B = 6629.440380 C = 8691.492570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.568 5.568 3 C 0.027 3.973 4 C 0.069 3.931 5 C -0.113 4.113 6 C 0.125 3.875 7 N -0.602 5.602 8 C 0.253 3.747 9 C -0.533 4.533 10 H 0.046 0.954 11 C 0.027 3.973 12 N -0.918 5.918 13 Si 0.945 3.055 14 H -0.274 1.274 15 H -0.279 1.279 16 H -0.278 1.278 17 C 0.513 3.487 18 O -0.587 6.587 19 C -0.130 4.130 20 C 0.099 3.901 21 H 0.060 0.940 22 C -0.146 4.146 23 C -0.133 4.133 24 C 0.059 3.941 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.146 4.146 28 O -0.367 6.367 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.033 0.967 42 H 0.022 0.978 43 H 0.267 0.733 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.108 0.892 49 H 0.072 0.928 50 H 0.120 0.880 51 H 0.054 0.946 52 H 0.057 0.943 53 H 0.091 0.909 54 H 0.056 0.944 55 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 11.632 6.349 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.292 5.292 3 C -0.122 4.122 4 C -0.060 4.060 5 C -0.152 4.152 6 C 0.001 3.999 7 N -0.332 5.332 8 C 0.132 3.868 9 C -0.572 4.572 10 H 0.064 0.936 11 C -0.173 4.173 12 N -0.557 5.557 13 Si 0.771 3.229 14 H -0.200 1.200 15 H -0.204 1.204 16 H -0.203 1.203 17 C 0.302 3.698 18 O -0.469 6.469 19 C -0.170 4.170 20 C 0.041 3.959 21 H 0.078 0.922 22 C -0.184 4.184 23 C -0.170 4.170 24 C 0.019 3.981 25 C -0.165 4.165 26 C -0.171 4.171 27 C -0.183 4.183 28 O -0.287 6.287 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.076 0.924 44 H 0.131 0.869 45 H 0.108 0.892 46 H 0.116 0.884 47 H 0.101 0.899 48 H 0.127 0.873 49 H 0.091 0.909 50 H 0.138 0.862 51 H 0.073 0.927 52 H 0.076 0.924 53 H 0.110 0.890 54 H 0.075 0.925 55 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.114 11.742 6.060 13.381 hybrid contribution -0.354 0.021 -0.428 0.556 sum 1.760 11.762 5.631 13.159 Atomic orbital electron populations 1.22418 0.85654 1.02935 1.01096 1.61926 1.09355 1.14283 1.43669 1.22369 1.00179 0.88694 1.00916 1.21976 0.94160 0.98652 0.91179 1.21748 0.95193 0.99226 0.99073 1.21276 0.80470 1.00375 0.97751 1.48244 1.06257 1.24527 1.54198 1.19113 0.94684 0.82421 0.90534 1.21585 1.43583 0.98470 0.93544 0.93614 1.25493 0.94880 0.94720 1.02208 1.69986 1.44604 1.04597 1.36529 0.85749 0.78505 0.77663 0.80962 1.19950 1.20426 1.20291 1.20836 0.89932 0.81511 0.77485 1.90575 1.80112 1.30914 1.45269 1.21878 0.91272 0.99940 1.03871 1.22502 0.95144 0.83582 0.94677 0.92174 1.23022 0.92547 1.00035 1.02789 1.22914 0.98524 0.94258 1.01308 1.22989 0.84894 0.91943 0.98225 1.22950 1.02952 0.93839 0.96775 1.22782 0.99935 0.98481 0.95900 1.23285 1.02666 0.95886 0.96490 1.88812 1.34396 1.30206 1.75260 0.95049 0.90381 0.90752 0.93290 0.90037 0.95293 0.94511 0.89636 0.92467 0.94493 0.91259 0.89939 0.94862 0.95951 0.92384 0.86862 0.89213 0.88403 0.89903 0.87342 0.90946 0.86173 0.92743 0.92418 0.89027 0.92516 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.57 127.69 1.22 1.81 16 2 N -0.57 -16.88 5.02 -948.85 -4.76 -21.64 16 3 C 0.03 0.75 9.32 127.69 1.19 1.94 16 4 C 0.07 2.12 4.96 86.30 0.43 2.55 16 5 C -0.11 -4.38 5.46 30.59 0.17 -4.21 16 6 C 0.12 4.84 5.45 86.38 0.47 5.31 16 7 N -0.60 -26.42 2.46 -826.16 -2.03 -28.45 16 8 C 0.25 12.19 5.01 85.63 0.43 12.62 16 9 C -0.53 -28.17 8.82 25.60 0.23 -27.95 16 10 H 0.05 2.55 7.42 -2.91 -0.02 2.52 16 11 C 0.03 1.45 5.46 84.65 0.46 1.91 16 12 N -0.92 -50.34 13.29 21.45 0.28 -50.05 16 13 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 17 C 0.51 22.61 7.57 87.65 0.66 23.27 16 18 O -0.59 -28.15 15.08 7.96 0.12 -28.03 16 19 C -0.13 -4.96 3.74 29.85 0.11 -4.85 16 20 C 0.10 3.30 2.95 30.99 0.09 3.39 16 21 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 22 C -0.15 -3.56 6.65 31.68 0.21 -3.35 16 23 C -0.13 -2.94 6.48 31.59 0.20 -2.73 16 24 C 0.06 1.59 1.12 -10.73 -0.01 1.57 16 25 C -0.13 -3.00 7.64 30.81 0.24 -2.77 16 26 C -0.13 -2.99 8.09 31.25 0.25 -2.73 16 27 C -0.15 -3.21 7.63 30.81 0.24 -2.97 16 28 O -0.37 -13.73 10.38 -138.00 -1.43 -15.16 16 29 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 31 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 32 H 0.05 1.62 6.47 -2.39 -0.02 1.60 16 33 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 34 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 36 H 0.09 2.40 8.06 -2.38 -0.02 2.38 16 37 H 0.06 2.54 7.27 -2.39 -0.02 2.52 16 38 H 0.04 1.58 6.55 -2.38 -0.02 1.57 16 39 H 0.07 2.63 7.42 -2.39 -0.02 2.61 16 40 H 0.08 2.93 7.89 -2.39 -0.02 2.91 16 41 H 0.03 1.62 6.44 -2.39 -0.02 1.61 16 42 H 0.02 1.13 7.89 -2.39 -0.02 1.11 16 43 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.11 3.89 7.40 -2.39 -0.02 3.87 16 45 H 0.09 3.80 8.00 -2.39 -0.02 3.78 16 46 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 2.01 7.70 -2.39 -0.02 1.99 16 48 H 0.11 1.69 7.96 -2.39 -0.02 1.67 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 51 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 52 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 53 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 54 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 55 H 0.12 1.81 8.01 -2.39 -0.02 1.79 16 Total: -1.00 -66.25 429.51 1.62 -64.63 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.83 Total: 30.83 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 6.59 Total: 2.81 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -6.51 Total: -100.14 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -1.31 Total: -43.20 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -66.25 1.62 -64.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896890762.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.479 kcal (2) G-P(sol) polarization free energy of solvation -66.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds