Wall clock time and date at job start Tue Mar 31 2020 23:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.27538 * 2 1 4 4 C 1.54597 * 110.30868 * 237.80942 * 2 1 3 5 5 C 1.54937 * 102.91997 * 263.03913 * 4 2 1 6 6 N 1.48533 * 103.22765 * 322.58389 * 5 4 2 7 7 C 1.46900 * 110.99846 * 159.72122 * 6 5 4 8 8 C 1.53006 * 109.47130 * 52.60202 * 7 6 5 9 9 N 1.46502 * 109.47078 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99741 * 180.02562 * 9 8 7 11 11 O 1.21583 * 120.00448 * 354.91893 * 10 9 8 12 12 N 1.34781 * 119.99627 * 174.91345 * 10 9 8 13 13 C 1.47081 * 120.88035 * 184.71533 * 12 10 9 14 14 C 1.53692 * 108.27528 * 128.75830 * 13 12 10 15 15 N 1.46899 * 109.25621 * 54.08386 * 14 13 12 16 16 C 1.46906 * 110.99684 * 172.60566 * 15 14 13 17 17 C 1.50693 * 109.47063 * 294.30030 * 16 15 14 18 18 H 1.08005 * 120.00613 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99825 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99921 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99950 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47134 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46931 * 120.00364 * 21 19 17 24 24 H 1.48505 * 109.46990 * 240.00190 * 21 19 17 25 25 C 1.46896 * 111.26789 * 296.75349 * 15 14 13 26 26 C 1.47079 * 120.88472 * 5.00052 * 12 10 9 27 27 C 1.47897 * 105.82122 * 39.21034 * 6 5 4 28 28 H 1.09011 * 109.46912 * 297.90738 * 1 2 3 29 29 H 1.08996 * 109.47621 * 57.90352 * 1 2 3 30 30 H 1.08994 * 109.47160 * 177.91342 * 1 2 3 31 31 H 1.08993 * 109.47160 * 182.08931 * 3 2 1 32 32 H 1.09000 * 109.47353 * 302.09605 * 3 2 1 33 33 H 1.09007 * 109.46614 * 62.09205 * 3 2 1 34 34 H 1.08995 * 110.72284 * 21.39801 * 4 2 1 35 35 H 1.08996 * 110.72376 * 144.50131 * 4 2 1 36 36 H 1.09000 * 110.66694 * 204.14358 * 5 4 2 37 37 H 1.09006 * 110.66353 * 81.02209 * 5 4 2 38 38 H 1.08992 * 109.47137 * 172.60665 * 7 6 5 39 39 H 1.09007 * 109.47228 * 292.60845 * 7 6 5 40 40 H 1.09000 * 109.46894 * 299.99692 * 8 7 6 41 41 H 1.08995 * 109.46875 * 59.99979 * 8 7 6 42 42 H 0.97004 * 120.00232 * 359.97438 * 9 8 7 43 43 H 1.08999 * 109.62523 * 248.52802 * 13 12 10 44 44 H 1.08998 * 109.62684 * 9.10685 * 13 12 10 45 45 H 1.08994 * 109.65021 * 294.07878 * 14 13 12 46 46 H 1.09005 * 109.42046 * 173.94543 * 14 13 12 47 47 H 1.08995 * 109.47081 * 54.30548 * 16 15 14 48 48 H 1.09000 * 109.46685 * 174.30144 * 16 15 14 49 49 H 0.96999 * 119.99680 * 179.97438 * 20 19 17 50 50 H 1.09001 * 109.49152 * 303.14337 * 25 15 14 51 51 H 1.09008 * 109.48791 * 183.06652 * 25 15 14 52 52 H 1.09005 * 109.62433 * 350.88813 * 26 12 10 53 53 H 1.08996 * 109.63440 * 111.47249 * 26 12 10 54 54 H 1.08997 * 109.92184 * 94.01563 * 27 6 5 55 55 H 1.09000 * 109.91905 * 215.11713 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 6 2.0665 -0.7724 -1.2270 5 6 2.3584 -2.1802 -0.6496 6 7 2.8810 -1.8884 0.7098 7 6 2.7669 -3.0653 1.5815 8 6 3.4142 -4.2712 0.8975 9 7 3.3000 -5.4451 1.7665 10 6 3.8038 -6.6300 1.3682 11 8 4.2703 -6.7478 0.2516 12 7 3.7907 -7.6842 2.2078 13 6 4.4268 -8.9562 1.8325 14 6 5.3676 -9.3792 2.9718 15 7 4.6167 -9.4096 4.2340 16 6 5.4311 -9.9765 5.3174 17 6 5.7153 -11.4273 5.0257 18 1 5.3300 -11.8828 4.1254 19 6 6.4683 -12.1731 5.9078 20 7 6.9379 -11.6184 7.0039 21 14 6.8201 -13.9718 5.5466 22 1 6.1833 -14.3522 4.2602 23 1 8.2875 -14.1800 5.4527 24 1 6.2697 -14.8130 6.6397 25 6 4.1211 -8.0738 4.5915 26 6 3.1345 -7.5954 3.5211 27 6 2.0645 -0.7673 1.2236 28 1 -0.3633 0.4810 0.9083 29 1 -0.3634 0.5460 -0.8705 30 1 -0.3633 -1.0269 -0.0374 31 1 3.1493 1.4202 -0.0375 32 1 1.6739 1.9653 -0.8706 33 1 1.7348 1.9427 0.9082 34 1 1.3102 -0.8258 -2.0100 35 1 2.9787 -0.3107 -1.6047 36 1 3.1104 -2.6935 -1.2489 37 1 1.4432 -2.7696 -0.5917 38 1 3.2735 -2.8682 2.5262 39 1 1.7144 -3.2767 1.7707 40 1 2.9075 -4.4683 -0.0472 41 1 4.4666 -4.0599 0.7082 42 1 2.8623 -5.3694 2.6289 43 1 3.6617 -9.7181 1.6832 44 1 4.9986 -8.8226 0.9142 45 1 6.1878 -8.6662 3.0536 46 1 5.7671 -10.3715 2.7623 47 1 6.3710 -9.4294 5.3897 48 1 4.8896 -9.8946 6.2598 49 1 7.4673 -12.1432 7.6245 50 1 4.9589 -7.3790 4.6509 51 1 3.6168 -8.1194 5.5568 52 1 2.8516 -6.5616 3.7198 53 1 2.2477 -8.2290 3.5311 54 1 1.2324 -1.1532 1.8123 55 1 2.6805 -0.1103 1.8376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898588382.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:45 Heat of formation + Delta-G solvation = -36.686382 kcal Electronic energy + Delta-G solvation = -29756.411367 eV Core-core repulsion = 25827.295592 eV Total energy + Delta-G solvation = -3929.115775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51162 -40.55374 -39.14286 -36.77910 -35.99809 -34.83054 -34.29129 -32.12568 -31.01444 -30.25830 -29.22214 -28.18238 -27.19115 -25.75061 -24.67564 -24.09287 -23.82086 -22.19907 -21.79039 -20.52226 -19.94195 -19.10277 -18.49293 -17.58477 -17.07320 -16.74255 -16.55294 -16.45352 -16.00684 -15.90250 -15.50273 -15.38113 -15.27197 -15.09523 -14.93906 -14.48345 -14.39091 -14.17669 -14.03008 -13.88198 -13.65959 -13.50942 -13.09244 -12.94133 -12.74868 -12.60497 -12.59068 -12.38764 -12.36184 -12.32945 -12.23465 -12.18199 -12.12474 -11.75624 -11.61712 -11.50061 -11.38515 -11.36700 -11.17853 -10.62173 -10.30437 -9.61826 -9.42210 -9.04379 -8.20755 -6.30264 1.42056 1.43050 1.51785 1.56372 2.06413 2.40873 2.70692 3.11679 3.17098 3.24513 3.51135 3.68497 3.87229 3.92586 3.94218 4.04603 4.06730 4.15222 4.25365 4.32491 4.36218 4.41994 4.43740 4.47199 4.55846 4.61834 4.71438 4.77514 4.81772 4.83380 4.84509 4.87886 4.90102 4.93980 4.94971 5.01890 5.08057 5.10228 5.17308 5.17405 5.22873 5.32181 5.34734 5.39375 5.43248 5.48097 5.64386 5.87003 5.90090 6.01214 6.03721 6.25524 6.58401 6.85547 6.89186 7.39579 7.46995 8.90497 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.033503 B = 0.001694 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.543279 B =16527.044775 C =16931.892187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 C -0.133 4.133 4 C -0.113 4.113 5 C 0.029 3.971 6 N -0.525 5.525 7 C 0.046 3.954 8 C 0.145 3.855 9 N -0.733 5.733 10 C 0.706 3.294 11 O -0.634 6.634 12 N -0.628 5.628 13 C 0.145 3.855 14 C 0.057 3.943 15 N -0.537 5.537 16 C 0.208 3.792 17 C -0.523 4.523 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.278 1.278 25 C 0.037 3.963 26 C 0.127 3.873 27 C 0.044 3.956 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.409 0.591 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.009 0.991 46 H 0.080 0.920 47 H -0.042 1.042 48 H 0.012 0.988 49 H 0.264 0.736 50 H 0.018 0.982 51 H 0.091 0.909 52 H 0.110 0.890 53 H 0.088 0.912 54 H 0.052 0.948 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 25.364 -12.531 32.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 C -0.191 4.191 4 C -0.151 4.151 5 C -0.099 4.099 6 N -0.250 5.250 7 C -0.082 4.082 8 C 0.021 3.979 9 N -0.393 5.393 10 C 0.407 3.593 11 O -0.515 6.515 12 N -0.365 5.365 13 C 0.022 3.978 14 C -0.072 4.072 15 N -0.262 5.262 16 C 0.081 3.919 17 C -0.561 4.561 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.186 1.186 23 H -0.208 1.208 24 H -0.204 1.204 25 C -0.092 4.092 26 C 0.004 3.996 27 C -0.083 4.083 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.248 0.752 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.027 0.973 46 H 0.098 0.902 47 H -0.024 1.024 48 H 0.030 0.970 49 H 0.073 0.927 50 H 0.037 0.963 51 H 0.109 0.891 52 H 0.128 0.872 53 H 0.106 0.894 54 H 0.071 0.929 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.769 25.107 -13.243 31.998 hybrid contribution 0.474 -0.816 0.928 1.324 sum -14.295 24.291 -12.315 30.758 Atomic orbital electron populations 1.21884 0.93298 1.01652 1.02533 1.21434 0.95998 0.96059 0.94226 1.21826 1.00757 0.94248 1.02252 1.22631 1.01457 0.93950 0.97080 1.23293 0.98497 0.97805 0.90275 1.64752 1.51979 1.05676 1.02555 1.22359 0.99835 0.88916 0.97136 1.21101 1.00863 0.83012 0.92972 1.45008 1.63370 1.07517 1.23365 1.15924 0.78886 0.80860 0.83634 1.90865 1.55021 1.84377 1.21273 1.47421 1.59091 1.12013 1.17989 1.21592 0.95914 0.83751 0.96573 1.22366 0.93994 1.00637 0.90216 1.62002 1.39554 1.21016 1.03625 1.19389 0.89169 0.94033 0.89262 1.21507 1.31682 0.95849 1.07051 0.91615 1.25894 0.95546 1.03385 0.94781 1.70086 1.36773 1.38327 1.12288 0.85345 0.77693 0.79089 0.78554 1.18613 1.20756 1.20405 1.22536 0.97711 0.89456 0.99519 1.21862 0.95129 1.02656 0.79931 1.23083 0.95606 0.92724 0.96893 0.91980 0.91750 0.93142 0.92834 0.92015 0.92070 0.90079 0.90921 0.90645 0.93420 0.89175 0.92685 0.92317 0.92793 0.75220 0.90195 0.89729 0.97289 0.90159 1.02413 0.96966 0.92740 0.96340 0.89114 0.87231 0.89353 0.92941 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.21 71.98 0.59 -0.52 16 2 C -0.08 -0.76 0.97 -51.30 -0.05 -0.81 16 3 C -0.13 -1.17 8.24 71.98 0.59 -0.58 16 4 C -0.11 -1.28 6.16 31.80 0.20 -1.08 16 5 C 0.03 0.41 5.10 86.65 0.44 0.85 16 6 N -0.52 -7.82 5.40 -883.00 -4.76 -12.59 16 7 C 0.05 0.65 5.14 86.31 0.44 1.09 16 8 C 0.15 2.89 5.34 86.38 0.46 3.35 16 9 N -0.73 -15.69 5.47 -478.53 -2.62 -18.31 16 10 C 0.71 21.38 8.31 179.05 1.49 22.87 16 11 O -0.63 -24.31 15.83 -3.98 -0.06 -24.37 16 12 N -0.63 -18.48 3.00 -835.06 -2.51 -20.99 16 13 C 0.15 4.79 6.61 86.50 0.57 5.37 16 14 C 0.06 2.25 5.47 86.54 0.47 2.72 16 15 N -0.54 -22.26 4.62 -898.90 -4.15 -26.42 16 16 C 0.21 10.82 4.72 85.55 0.40 11.22 16 17 C -0.52 -29.07 8.41 25.60 0.22 -28.86 16 18 H 0.07 3.57 7.13 -2.91 -0.02 3.55 16 19 C 0.00 0.11 5.46 84.66 0.46 0.57 16 20 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 21 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 C 0.04 1.19 5.62 86.38 0.49 1.67 16 26 C 0.13 3.03 6.59 86.35 0.57 3.60 16 27 C 0.04 0.52 6.02 86.45 0.52 1.04 16 28 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.55 8.11 -2.39 -0.02 0.53 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.08 0.77 7.85 -2.39 -0.02 0.75 16 35 H 0.07 0.89 7.85 -2.39 -0.02 0.87 16 36 H 0.08 1.22 7.66 -2.39 -0.02 1.20 16 37 H 0.05 0.66 8.00 -2.38 -0.02 0.64 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 0.65 7.81 -2.38 -0.02 0.63 16 40 H 0.06 1.28 6.79 -2.39 -0.02 1.26 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.41 6.24 5.97 -92.71 -0.55 5.68 16 43 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.88 7.09 -2.39 -0.02 2.86 16 45 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.08 3.40 6.67 -2.38 -0.02 3.38 16 47 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 48 H 0.01 0.68 7.97 -2.39 -0.02 0.66 16 49 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 50 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.09 2.74 7.99 -2.38 -0.02 2.72 16 52 H 0.11 1.72 5.63 -2.38 -0.01 1.71 16 53 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 54 H 0.05 0.56 7.11 -2.39 -0.02 0.54 16 55 H 0.08 0.96 7.69 -2.39 -0.02 0.94 16 Total: -1.00 -70.58 418.15 -3.63 -74.21 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.29 Total: 15.41 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 7.87 Total: 22.50 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -13.76 Total: -133.70 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -70.58 -3.63 -74.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898588382.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.525 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds