Wall clock time and date at job start Tue Mar 31 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99860 * 2 1 4 4 N 1.34782 * 120.00333 * 180.02562 * 2 1 3 5 5 C 1.47607 * 118.63388 * 353.98738 * 4 2 1 6 6 C 1.53953 * 112.13877 * 222.15711 * 5 4 2 7 7 C 1.50882 * 110.09279 * 40.56941 * 6 5 4 8 8 C 1.52571 * 109.34507 * 268.10641 * 7 6 5 9 9 C 1.47097 * 114.32620 * 85.03058 * 8 7 6 10 10 C 1.44573 * 118.64463 * 174.01025 * 4 2 1 11 11 H 1.09002 * 109.45077 * 209.27023 * 10 4 2 12 12 C 1.53006 * 109.44840 * 329.22057 * 10 4 2 13 13 C 1.53119 * 109.52237 * 307.07073 * 12 10 4 14 14 C 1.53029 * 109.27904 * 182.37795 * 13 12 10 15 15 N 1.46851 * 109.52428 * 59.17901 * 14 13 12 16 16 C 1.46897 * 111.00398 * 174.15881 * 15 14 13 17 17 C 1.53004 * 109.47063 * 304.12522 * 16 15 14 18 18 H 1.09000 * 109.47184 * 55.47890 * 17 16 15 19 19 O 1.42900 * 109.47079 * 295.47327 * 17 16 15 20 20 C 1.50707 * 109.46834 * 175.47618 * 17 16 15 21 21 H 1.07995 * 120.00092 * 359.97438 * 20 17 16 22 22 C 1.37878 * 119.99596 * 179.97438 * 20 17 16 23 23 N 1.31513 * 119.99912 * 0.02562 * 22 20 17 24 24 Si 1.86794 * 119.99750 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.47354 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47470 * 119.99954 * 24 22 20 27 27 H 1.48504 * 109.47306 * 240.00065 * 24 22 20 28 28 C 1.46848 * 111.19607 * 298.25940 * 15 14 13 29 29 C 1.53033 * 109.52406 * 61.74245 * 28 15 14 30 30 H 1.09002 * 109.46868 * 239.99825 * 1 2 3 31 31 H 1.08992 * 109.47316 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47348 * 119.99915 * 1 2 3 33 33 H 1.08998 * 108.95181 * 342.84468 * 5 4 2 34 34 H 1.08997 * 108.94797 * 101.48107 * 5 4 2 35 35 H 1.09005 * 109.36505 * 160.75739 * 6 5 4 36 36 H 1.08993 * 109.36565 * 280.37243 * 6 5 4 37 37 H 1.08993 * 109.49470 * 28.07121 * 7 6 5 38 38 H 1.08994 * 109.48905 * 148.12385 * 7 6 5 39 39 H 1.08995 * 108.50768 * 206.28045 * 8 7 6 40 40 H 1.08998 * 108.51352 * 323.93136 * 8 7 6 41 41 H 1.09002 * 109.32527 * 176.92937 * 9 8 7 42 42 H 1.08996 * 109.32917 * 57.45115 * 9 8 7 43 43 H 1.08992 * 109.51984 * 67.19629 * 12 10 4 44 44 H 1.09001 * 109.50022 * 62.43499 * 13 12 10 45 45 H 1.09006 * 109.50224 * 302.32421 * 13 12 10 46 46 H 1.08997 * 109.46399 * 299.16662 * 14 13 12 47 47 H 1.09005 * 109.45832 * 179.18859 * 14 13 12 48 48 H 1.08998 * 109.47516 * 184.12231 * 16 15 14 49 49 H 1.09000 * 109.47010 * 64.11979 * 16 15 14 50 50 H 0.96701 * 113.99931 * 300.00541 * 19 17 16 51 51 H 0.97004 * 119.99473 * 179.97438 * 23 22 20 52 52 H 1.09004 * 109.46081 * 181.75500 * 28 15 14 53 53 H 1.08992 * 109.46065 * 301.72226 * 28 15 14 54 54 H 1.09000 * 109.50181 * 180.87950 * 29 28 15 55 55 H 1.09004 * 109.53868 * 60.77607 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4189 -2.4241 0.1346 6 6 2.1065 -3.4200 1.0863 7 6 2.6687 -2.6909 2.2816 8 6 4.1159 -2.2987 1.9996 9 6 4.2689 -1.0309 1.2695 10 6 3.6203 -1.1363 -0.1329 11 1 3.9595 -2.0498 -0.6215 12 6 4.0286 0.0739 -0.9753 13 6 3.2545 0.0624 -2.2964 14 6 3.7100 1.2414 -3.1592 15 7 5.1520 1.1339 -3.4152 16 6 5.5989 2.1716 -4.3540 17 6 4.7800 2.0799 -5.6431 18 1 3.7184 2.1468 -5.4048 19 8 5.0457 0.8330 -6.2886 20 6 5.1609 3.2123 -6.5618 21 1 5.9116 3.9261 -6.2565 22 6 4.5509 3.3368 -7.7920 23 7 3.6364 2.4678 -8.1635 24 14 5.0235 4.7399 -8.9310 25 1 6.0689 5.5725 -8.2835 26 1 5.5501 4.1875 -10.2048 27 1 3.8277 5.5749 -9.2104 28 6 5.9190 1.1904 -2.1642 29 6 5.5294 0.0099 -1.2717 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8899 33 1 0.4249 -2.1958 0.5191 34 1 1.3193 -2.8850 -0.8481 35 1 1.3794 -4.1591 1.4228 36 1 2.9148 -3.9254 0.5580 37 1 2.0791 -1.7940 2.4710 38 1 2.6315 -3.3417 3.1551 39 1 4.6436 -2.2166 2.9498 40 1 4.5814 -3.0912 1.4138 41 1 5.3292 -0.8031 1.1604 42 1 3.7865 -0.2308 1.8308 43 1 3.8038 0.9901 -0.4294 44 1 2.1872 0.1509 -2.0935 45 1 3.4490 -0.8714 -2.8240 46 1 3.5026 2.1753 -2.6368 47 1 3.1710 1.2277 -4.1065 48 1 6.6544 2.0245 -4.5828 49 1 5.4583 3.1541 -3.9034 50 1 5.9733 0.7049 -6.5299 51 1 3.2070 2.5557 -9.0289 52 1 6.9844 1.1397 -2.3888 53 1 5.7012 2.1245 -1.6465 54 1 6.0875 0.0608 -0.3368 55 1 5.7599 -0.9250 -1.7826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929613173.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:51 Heat of formation + Delta-G solvation = -99.934724 kcal Electronic energy + Delta-G solvation = -32139.370983 eV Core-core repulsion = 28175.219803 eV Total energy + Delta-G solvation = -3964.151180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06190 -39.79998 -38.46498 -37.52516 -35.26966 -34.93307 -34.23777 -32.55521 -31.82958 -30.80259 -29.85068 -27.63883 -27.02868 -25.69130 -24.37315 -23.41943 -22.86494 -21.84313 -21.34377 -20.65654 -19.53995 -19.13835 -17.66559 -17.34729 -16.91751 -16.69091 -16.50538 -16.24980 -16.03855 -15.76029 -15.49309 -15.21622 -15.19371 -14.85077 -14.68605 -14.51605 -14.07825 -14.03368 -13.88319 -13.49345 -13.35803 -13.23261 -13.16770 -12.98566 -12.93285 -12.76892 -12.65583 -12.60128 -12.32725 -12.16005 -12.06139 -12.04674 -11.86223 -11.59752 -11.48272 -11.39557 -11.24674 -11.06784 -10.84159 -10.64274 -10.09526 -9.96016 -9.45889 -9.15121 -8.15237 -6.41386 1.37867 1.38354 1.51290 1.72904 2.16519 2.36675 3.04679 3.10668 3.51693 3.76104 3.81860 3.89697 4.01868 4.06758 4.10796 4.20299 4.24109 4.26346 4.28363 4.40870 4.42053 4.46523 4.50686 4.54133 4.59922 4.64653 4.65621 4.72688 4.77609 4.86586 4.89286 4.90576 4.94448 4.98701 5.04196 5.06269 5.11633 5.15302 5.18835 5.21072 5.30423 5.31562 5.34567 5.40642 5.51539 5.58241 5.59442 5.73928 5.94106 5.99957 6.21538 6.32845 6.54586 6.71788 7.32370 7.36897 7.59411 8.89615 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.002681 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.392886 B =10441.680719 C =10963.679849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.496 3.504 3 O -0.577 6.577 4 N -0.600 5.600 5 C 0.099 3.901 6 C -0.128 4.128 7 C -0.113 4.113 8 C -0.118 4.118 9 C -0.121 4.121 10 C 0.163 3.837 11 H 0.085 0.915 12 C -0.104 4.104 13 C -0.080 4.080 14 C 0.065 3.935 15 N -0.530 5.530 16 C 0.046 3.954 17 C 0.236 3.764 18 H 0.022 0.978 19 O -0.569 6.569 20 C -0.590 4.590 21 H 0.057 0.943 22 C 0.025 3.975 23 N -0.898 5.898 24 Si 0.963 3.037 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.279 1.279 28 C 0.054 3.946 29 C -0.100 4.100 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.006 0.994 47 H 0.047 0.953 48 H 0.073 0.927 49 H 0.014 0.986 50 H 0.353 0.647 51 H 0.262 0.738 52 H 0.080 0.920 53 H 0.015 0.985 54 H 0.086 0.914 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 -14.623 23.811 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.287 3.713 3 O -0.458 6.458 4 N -0.332 5.332 5 C -0.022 4.022 6 C -0.165 4.165 7 C -0.151 4.151 8 C -0.155 4.155 9 C -0.160 4.160 10 C 0.059 3.941 11 H 0.103 0.897 12 C -0.123 4.123 13 C -0.118 4.118 14 C -0.063 4.063 15 N -0.254 5.254 16 C -0.082 4.082 17 C 0.178 3.822 18 H 0.040 0.960 19 O -0.373 6.373 20 C -0.628 4.628 21 H 0.075 0.925 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.787 3.213 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.204 1.204 28 C -0.074 4.074 29 C -0.138 4.138 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.024 0.976 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.032 0.968 50 H 0.197 0.803 51 H 0.071 0.929 52 H 0.098 0.902 53 H 0.034 0.966 54 H 0.104 0.896 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.340 -14.718 23.567 28.122 hybrid contribution 0.503 2.046 -0.786 2.249 sum -3.836 -12.671 22.781 26.349 Atomic orbital electron populations 1.22034 0.89931 1.05436 1.05814 1.21387 0.91870 0.83263 0.74777 1.90606 1.70443 1.33428 1.51356 1.47866 1.06667 1.06838 1.71822 1.22276 0.95751 0.83530 1.00652 1.21769 1.01508 0.97562 0.95709 1.21041 0.95528 1.00119 0.98373 1.20467 0.97597 0.97124 1.00310 1.21170 1.01082 0.98441 0.95264 1.21010 0.79931 0.97961 0.95174 0.89664 1.21854 0.94441 1.01001 0.94976 1.21368 0.98566 0.96680 0.95183 1.21918 0.89278 0.96961 0.98139 1.61965 1.03439 1.47932 1.12082 1.22705 1.00022 0.91225 0.94227 1.19226 0.93431 0.82322 0.87224 0.96027 1.86494 1.29932 1.39772 1.81058 1.22070 1.24231 1.13337 1.03145 0.92516 1.25922 0.94073 0.98137 0.99618 1.70236 1.25901 1.36377 1.21023 0.85465 0.78290 0.78972 0.78554 1.18878 1.20082 1.20449 1.22153 0.98172 0.97503 0.89561 1.21632 0.95557 0.97830 0.98763 0.86734 0.90192 0.88100 0.87882 0.91198 0.88448 0.91458 0.93010 0.90735 0.92074 0.91537 0.90530 0.93770 0.88563 0.92905 0.92780 0.97602 0.93419 0.90855 0.96759 0.80262 0.92938 0.90197 0.96649 0.89605 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 8.78 71.24 0.63 -1.96 16 2 C 0.50 11.47 5.51 87.66 0.48 11.96 16 3 O -0.58 -18.81 12.87 -3.02 -0.04 -18.84 16 4 N -0.60 -11.11 1.86 -794.02 -1.48 -12.58 16 5 C 0.10 1.07 5.93 86.49 0.51 1.58 16 6 C -0.13 -1.05 5.71 30.23 0.17 -0.87 16 7 C -0.11 -1.19 5.51 29.76 0.16 -1.02 16 8 C -0.12 -1.52 5.16 28.62 0.15 -1.38 16 9 C -0.12 -2.18 5.01 29.40 0.15 -2.04 16 10 C 0.16 3.40 1.53 45.99 0.07 3.47 16 11 H 0.09 1.67 8.06 -2.39 -0.02 1.65 16 12 C -0.10 -2.94 1.17 -10.71 -0.01 -2.95 16 13 C -0.08 -2.71 4.69 30.64 0.14 -2.57 16 14 C 0.07 2.75 5.14 86.32 0.44 3.19 16 15 N -0.53 -21.55 4.67 -896.37 -4.19 -25.74 16 16 C 0.05 2.12 4.63 86.31 0.40 2.52 16 17 C 0.24 12.94 2.54 29.85 0.08 13.01 16 18 H 0.02 1.35 5.97 -2.39 -0.01 1.34 16 19 O -0.57 -31.60 12.67 -148.98 -1.89 -33.49 16 20 C -0.59 -34.12 8.76 25.60 0.22 -33.89 16 21 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 22 C 0.02 1.45 5.40 84.66 0.46 1.90 16 23 N -0.90 -55.51 12.84 21.45 0.28 -55.24 16 24 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 C 0.05 1.77 5.46 86.32 0.47 2.25 16 29 C -0.10 -2.65 5.14 30.65 0.16 -2.49 16 30 H 0.11 0.97 7.17 -2.39 -0.02 0.95 16 31 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 0.67 5.84 -2.39 -0.01 0.65 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.07 0.61 7.31 -2.39 -0.02 0.59 16 37 H 0.05 0.69 7.48 -2.39 -0.02 0.67 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.79 7.35 -2.39 -0.02 0.77 16 41 H 0.08 1.33 6.31 -2.39 -0.02 1.31 16 42 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 3.31 5.38 -16.32 -0.09 3.22 16 44 H 0.05 1.77 5.52 -2.39 -0.01 1.76 16 45 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 46 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.05 2.34 5.81 -2.38 -0.01 2.33 16 48 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 49 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.35 17.45 9.04 -74.06 -0.67 16.78 16 51 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 52 H 0.08 2.40 8.12 -2.38 -0.02 2.39 16 53 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 54 H 0.09 1.85 6.55 -2.39 -0.02 1.83 16 55 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -74.76 399.62 -0.48 -75.24 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.12 Total: 33.06 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 4.69 Total: -9.30 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -5.39 Total: -93.56 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -1.93 Total: -52.33 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -74.76 -0.48 -75.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929613173.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.692 kcal (2) G-P(sol) polarization free energy of solvation -74.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds