Wall clock time and date at job start Tue Mar 31 2020 22:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 110.99757 * 2 1 4 4 C 1.46902 * 110.99819 * 123.95042 * 2 1 3 5 5 C 1.53001 * 109.46901 * 169.99731 * 4 2 1 6 6 C 1.53000 * 109.46886 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99658 * 90.00442 * 7 6 5 9 9 C 1.50701 * 109.47310 * 89.99973 * 8 7 6 10 10 H 1.07997 * 119.99940 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00037 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99860 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99877 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47093 * 60.00167 * 13 11 9 15 15 H 1.48503 * 109.47145 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47483 * 300.00005 * 13 11 9 17 17 C 1.34775 * 120.00337 * 270.00307 * 7 6 5 18 18 O 1.21285 * 119.99996 * 359.97438 * 17 7 6 19 19 C 1.50698 * 120.00318 * 180.02562 * 17 7 6 20 20 C 1.53001 * 109.47377 * 179.97438 * 19 17 7 21 21 H 1.08998 * 110.33230 * 55.79570 * 20 19 17 22 22 C 1.54482 * 110.37327 * 178.16404 * 20 19 17 23 23 C 1.54506 * 104.06363 * 142.80860 * 22 20 19 24 24 C 1.54477 * 104.06032 * 359.97438 * 23 22 20 25 25 H 1.09007 * 110.46628 * 94.90394 * 24 23 22 26 26 C 1.53001 * 110.37303 * 217.18512 * 24 23 22 27 27 C 1.52993 * 117.50236 * 245.58312 * 26 24 23 28 28 C 1.52997 * 117.49792 * 176.92320 * 26 24 23 29 29 O 1.44418 * 104.80762 * 336.02362 * 24 23 22 30 30 H 1.08997 * 109.47165 * 296.04575 * 1 2 3 31 31 H 1.08999 * 109.47557 * 56.04663 * 1 2 3 32 32 H 1.09002 * 109.46866 * 176.04674 * 1 2 3 33 33 H 1.09000 * 109.47302 * 183.95107 * 3 2 1 34 34 H 1.09001 * 109.47433 * 303.95319 * 3 2 1 35 35 H 1.09007 * 109.47275 * 63.95205 * 3 2 1 36 36 H 1.09001 * 109.46712 * 50.00134 * 4 2 1 37 37 H 1.09002 * 109.47411 * 290.00245 * 4 2 1 38 38 H 1.09001 * 109.46652 * 60.00371 * 5 4 2 39 39 H 1.08992 * 109.47514 * 300.00460 * 5 4 2 40 40 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 41 41 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 42 42 H 1.08998 * 109.46888 * 209.99779 * 8 7 6 43 43 H 1.08994 * 109.47490 * 329.99842 * 8 7 6 44 44 H 0.97000 * 119.99433 * 179.97438 * 12 11 9 45 45 H 1.09006 * 109.47054 * 299.99977 * 19 17 7 46 46 H 1.09003 * 109.47164 * 59.99309 * 19 17 7 47 47 H 1.09003 * 110.50744 * 261.45816 * 22 20 19 48 48 H 1.09001 * 110.50961 * 24.15841 * 22 20 19 49 49 H 1.08999 * 110.51052 * 241.35297 * 23 22 20 50 50 H 1.08999 * 110.50965 * 118.64513 * 23 22 20 51 51 H 1.08999 * 115.54445 * 31.26119 * 26 24 23 52 52 H 1.08998 * 117.49824 * 0.02562 * 27 26 24 53 53 H 1.09007 * 117.49422 * 145.01844 * 27 26 24 54 54 H 1.09007 * 117.49966 * 214.97998 * 28 26 24 55 55 H 1.08995 * 117.50146 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9554 0.9704 6 6 4.0526 -1.7536 2.1549 7 7 5.4975 -1.9345 1.9951 8 6 6.4252 -0.9447 2.5482 9 6 6.7878 -1.3296 3.9594 10 1 6.3688 -2.2220 4.4003 11 6 7.6545 -0.5424 4.6876 12 7 8.1651 0.5440 4.1505 13 14 8.1033 -1.0192 6.4371 14 1 8.7487 -2.3567 6.4356 15 1 9.0447 -0.0166 6.9974 16 1 6.8741 -1.0637 7.2690 17 6 5.9735 -3.0114 1.3392 18 8 5.2055 -3.8311 0.8816 19 6 7.4599 -3.1977 1.1752 20 6 7.7297 -4.4891 0.4002 21 1 7.2050 -4.4741 -0.5550 22 6 9.2471 -4.6772 0.1802 23 6 9.4615 -6.2004 0.3252 24 6 8.0484 -6.7523 0.6164 25 1 7.5725 -7.0869 -0.3054 26 6 8.1225 -7.9015 1.6237 27 6 7.7227 -9.2954 1.1360 28 6 6.8027 -8.5230 2.0848 29 8 7.3250 -5.6362 1.1793 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3633 -1.0253 -0.0709 33 1 3.0827 1.3433 -0.0708 34 1 1.5898 1.9163 -0.8524 35 1 1.7043 1.8724 0.9233 36 1 1.5089 -1.7406 1.1757 37 1 1.7975 -0.2247 2.0629 38 1 3.9909 0.0193 0.9323 39 1 3.7024 -1.4965 0.0452 40 1 3.8546 -1.2128 3.0804 41 1 3.5661 -2.7283 2.1925 42 1 7.3274 -0.9113 1.9376 43 1 5.9510 0.0367 2.5498 44 1 8.7745 1.0980 4.6631 45 1 7.8739 -2.3513 0.6270 46 1 7.9289 -3.2589 2.1573 47 1 9.5323 -4.3446 -0.8179 48 1 9.8129 -4.1377 0.9397 49 1 10.1334 -6.4140 1.1565 50 1 9.8528 -6.6209 -0.6011 51 1 8.9298 -7.8358 2.3532 52 1 7.4071 -9.3938 0.0973 53 1 8.2668 -10.1469 1.5448 54 1 6.7418 -8.8668 3.1174 55 1 5.8816 -8.1135 1.6702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930703131.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:14 Heat of formation + Delta-G solvation = -79.410230 kcal Electronic energy + Delta-G solvation = -30599.872269 eV Core-core repulsion = 26636.611097 eV Total energy + Delta-G solvation = -3963.261172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14020 -40.20443 -38.65372 -37.60982 -36.75983 -34.79571 -33.51769 -32.92298 -32.09838 -29.21436 -28.50400 -28.28480 -26.69124 -24.89860 -24.13466 -23.29519 -23.09716 -21.95648 -21.78220 -21.33946 -19.87273 -18.61786 -17.98469 -17.33295 -17.25929 -17.11554 -16.54250 -16.43990 -16.22147 -16.05773 -15.73672 -15.48887 -15.33579 -14.97844 -14.54707 -14.48530 -14.30863 -13.94614 -13.57639 -13.40654 -13.26807 -13.16622 -12.95833 -12.80263 -12.70707 -12.63692 -12.59224 -12.52421 -12.41975 -12.39781 -12.36513 -12.15353 -12.11767 -12.04125 -11.71708 -11.52497 -11.48047 -11.20980 -10.95962 -10.69927 -10.59416 -10.48913 -9.42936 -9.33569 -8.20067 -6.34188 1.41300 1.42194 1.49908 1.84445 2.29619 2.44757 2.60249 3.03402 3.09784 3.26357 3.53068 3.67091 3.76588 3.91827 3.97305 4.06828 4.09445 4.12057 4.17046 4.23227 4.30551 4.33754 4.41916 4.45113 4.45385 4.50214 4.60079 4.65462 4.68526 4.70067 4.74849 4.76741 4.77431 4.80177 4.94374 4.95959 4.98828 5.00168 5.00636 5.02508 5.14716 5.17062 5.19409 5.24243 5.26061 5.28460 5.29997 5.66344 5.87992 6.02749 6.07317 6.09929 6.10611 6.59490 6.83023 7.33286 7.46428 8.84871 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006779 B = 0.003721 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4129.480172 B = 7523.751997 C =10339.588772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.565 5.565 3 C 0.022 3.978 4 C 0.066 3.934 5 C -0.110 4.110 6 C 0.122 3.878 7 N -0.602 5.602 8 C 0.256 3.744 9 C -0.547 4.547 10 H 0.046 0.954 11 C 0.027 3.973 12 N -0.916 5.916 13 Si 0.951 3.049 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.275 1.275 17 C 0.513 3.487 18 O -0.585 6.585 19 C -0.125 4.125 20 C 0.094 3.906 21 H 0.063 0.937 22 C -0.147 4.147 23 C -0.137 4.137 24 C 0.093 3.907 25 H 0.066 0.934 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.187 4.187 29 O -0.382 6.382 30 H 0.029 0.971 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.020 0.980 44 H 0.268 0.732 45 H 0.114 0.886 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.111 0.889 52 H 0.102 0.898 53 H 0.117 0.883 54 H 0.098 0.902 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -8.461 -8.989 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.289 5.289 3 C -0.126 4.126 4 C -0.063 4.063 5 C -0.149 4.149 6 C -0.001 4.001 7 N -0.332 5.332 8 C 0.135 3.865 9 C -0.585 4.585 10 H 0.064 0.936 11 C -0.174 4.174 12 N -0.555 5.555 13 Si 0.777 3.223 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.200 1.200 17 C 0.302 3.698 18 O -0.467 6.467 19 C -0.164 4.164 20 C 0.036 3.964 21 H 0.081 0.919 22 C -0.185 4.185 23 C -0.174 4.174 24 C 0.035 3.965 25 H 0.083 0.917 26 C -0.180 4.180 27 C -0.184 4.184 28 C -0.224 4.224 29 O -0.302 6.302 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.132 0.868 46 H 0.109 0.891 47 H 0.118 0.882 48 H 0.095 0.905 49 H 0.099 0.901 50 H 0.118 0.882 51 H 0.129 0.871 52 H 0.120 0.880 53 H 0.136 0.864 54 H 0.117 0.883 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.803 -8.928 -9.429 13.284 hybrid contribution 0.011 0.704 1.869 1.997 sum -2.792 -8.224 -7.560 11.514 Atomic orbital electron populations 1.22427 0.85911 1.02785 1.01160 1.61963 1.09192 1.14545 1.43197 1.22448 1.00803 0.88330 1.01053 1.21955 0.94209 0.98512 0.91595 1.21721 0.95448 0.99794 0.97945 1.21240 0.80658 1.00016 0.98211 1.48217 1.07241 1.23834 1.53954 1.19049 0.88058 0.86634 0.92754 1.21617 1.27801 1.09556 0.99571 0.93587 1.25557 0.95469 0.94626 1.01714 1.69988 1.31753 1.14977 1.38802 0.85715 0.78193 0.78136 0.80292 1.19904 1.20313 1.20011 1.20826 0.91698 0.80132 0.77116 1.90581 1.60306 1.44139 1.51631 1.21714 0.92777 0.98570 1.03346 1.22700 0.94931 0.85308 0.93494 0.91868 1.23021 0.94167 0.97286 1.04035 1.22932 0.96327 0.94326 1.03832 1.22660 0.92068 0.86994 0.94730 0.91661 1.22335 0.99914 0.93545 1.02234 1.23079 1.02008 0.93340 0.99990 1.22837 0.94284 1.04722 1.00540 1.89284 1.67129 1.17248 1.56548 0.95245 0.90093 0.91065 0.92128 0.89942 0.95387 0.90471 0.94268 0.92289 0.92886 0.91001 0.91817 0.94926 0.96153 0.92259 0.86828 0.89078 0.88213 0.90547 0.90140 0.88182 0.87124 0.87985 0.86443 0.88335 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.57 127.69 1.22 1.72 16 2 N -0.56 -14.61 5.02 -948.84 -4.76 -19.37 16 3 C 0.02 0.51 9.32 127.69 1.19 1.70 16 4 C 0.07 1.86 4.96 86.30 0.43 2.29 16 5 C -0.11 -3.74 5.46 30.59 0.17 -3.57 16 6 C 0.12 4.79 5.41 86.38 0.47 5.26 16 7 N -0.60 -26.58 2.46 -826.16 -2.03 -28.61 16 8 C 0.26 12.38 4.97 85.63 0.43 12.80 16 9 C -0.55 -28.96 9.28 25.60 0.24 -28.72 16 10 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 11 C 0.03 1.43 5.46 84.65 0.46 1.89 16 12 N -0.92 -50.02 13.29 21.45 0.28 -49.74 16 13 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 C 0.51 22.70 7.58 87.66 0.66 23.37 16 18 O -0.58 -28.15 15.12 8.04 0.12 -28.03 16 19 C -0.12 -4.77 3.89 29.85 0.12 -4.65 16 20 C 0.09 3.12 2.76 31.10 0.09 3.21 16 21 H 0.06 2.14 8.01 -2.39 -0.02 2.12 16 22 C -0.15 -3.64 6.63 31.61 0.21 -3.43 16 23 C -0.14 -2.96 6.63 31.61 0.21 -2.75 16 24 C 0.09 2.53 3.46 31.10 0.11 2.64 16 25 H 0.07 1.71 7.95 -2.38 -0.02 1.69 16 26 C -0.16 -3.95 5.46 -10.80 -0.06 -4.01 16 27 C -0.15 -2.75 10.19 30.61 0.31 -2.44 16 28 C -0.19 -4.70 10.21 30.62 0.31 -4.38 16 29 O -0.38 -14.26 10.37 -137.89 -1.43 -15.69 16 30 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 32 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 33 H 0.06 1.57 6.47 -2.39 -0.02 1.56 16 34 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 35 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.08 2.12 8.06 -2.39 -0.02 2.10 16 37 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 38 H 0.06 2.05 6.55 -2.39 -0.02 2.03 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.80 8.07 -2.39 -0.02 2.78 16 41 H 0.06 2.57 7.42 -2.39 -0.02 2.55 16 42 H 0.03 1.60 6.44 -2.39 -0.02 1.59 16 43 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 44 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.11 3.92 7.40 -2.38 -0.02 3.91 16 46 H 0.09 3.85 8.00 -2.39 -0.02 3.83 16 47 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.08 1.96 7.87 -2.39 -0.02 1.94 16 49 H 0.08 1.67 7.66 -2.39 -0.02 1.65 16 50 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.11 2.58 7.82 -2.39 -0.02 2.56 16 52 H 0.10 1.74 8.07 -2.39 -0.02 1.72 16 53 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 54 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 55 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -65.01 435.96 1.59 -63.42 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.82 Total: 32.84 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 6.56 Total: 0.90 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -6.51 Total: -97.71 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.31 Total: -43.72 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -65.01 1.59 -63.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930703131.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.992 kcal (2) G-P(sol) polarization free energy of solvation -65.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds