Wall clock time and date at job start Tue Mar 31 2020 22:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99962 * 2 1 4 4 C 1.46907 * 110.99645 * 123.95016 * 2 1 3 5 5 C 1.53002 * 109.47118 * 66.04904 * 4 2 1 6 6 C 1.52998 * 109.46885 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46667 * 179.97438 * 6 5 4 8 8 C 1.46507 * 119.99756 * 269.99354 * 7 6 5 9 9 C 1.50698 * 109.47153 * 270.00038 * 8 7 6 10 10 H 1.08000 * 120.00136 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99777 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00069 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99881 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47396 * 90.00520 * 13 11 9 15 15 H 1.48500 * 109.47317 * 210.00606 * 13 11 9 16 16 H 1.48508 * 109.47114 * 330.00448 * 13 11 9 17 17 C 1.34776 * 120.00156 * 90.00338 * 7 6 5 18 18 O 1.21278 * 119.99993 * 359.97438 * 17 7 6 19 19 C 1.50700 * 120.00000 * 179.97438 * 17 7 6 20 20 C 1.53000 * 109.47446 * 179.97438 * 19 17 7 21 21 H 1.09004 * 110.27490 * 304.36497 * 20 19 17 22 22 C 1.54945 * 110.39461 * 182.21347 * 20 19 17 23 23 C 1.55304 * 100.93861 * 204.59506 * 22 20 19 24 24 C 1.54379 * 102.25554 * 34.13819 * 23 22 20 25 25 H 1.09006 * 109.90832 * 98.18952 * 24 23 22 26 26 C 1.53002 * 109.83228 * 219.12893 * 24 23 22 27 27 C 1.53002 * 117.49773 * 184.58618 * 26 24 23 28 28 C 1.53000 * 60.02940 * 252.51785 * 27 26 24 29 29 O 1.43239 * 107.58496 * 338.63926 * 24 23 22 30 30 H 1.09001 * 109.47195 * 296.04895 * 1 2 3 31 31 H 1.09000 * 109.47071 * 56.04778 * 1 2 3 32 32 H 1.08998 * 109.47302 * 176.05240 * 1 2 3 33 33 H 1.09001 * 109.46686 * 183.95639 * 3 2 1 34 34 H 1.08999 * 109.47315 * 303.94719 * 3 2 1 35 35 H 1.09001 * 109.47722 * 63.95147 * 3 2 1 36 36 H 1.08995 * 109.47199 * 306.04143 * 4 2 1 37 37 H 1.09006 * 109.46407 * 186.04399 * 4 2 1 38 38 H 1.08994 * 109.47188 * 59.99469 * 5 4 2 39 39 H 1.09005 * 109.46728 * 299.99787 * 5 4 2 40 40 H 1.08994 * 109.47595 * 59.99775 * 6 5 4 41 41 H 1.09003 * 109.46945 * 299.99106 * 6 5 4 42 42 H 1.09000 * 109.46997 * 30.00563 * 8 7 6 43 43 H 1.09003 * 109.46766 * 150.00422 * 8 7 6 44 44 H 0.96994 * 120.00101 * 179.97438 * 12 11 9 45 45 H 1.09003 * 109.47181 * 59.99600 * 19 17 7 46 46 H 1.08997 * 109.47082 * 299.99605 * 19 17 7 47 47 H 1.08992 * 111.12495 * 322.51909 * 22 20 19 48 48 H 1.09005 * 111.12135 * 86.68070 * 22 20 19 49 49 H 1.08997 * 110.85402 * 275.94132 * 23 22 20 50 50 H 1.09001 * 110.84506 * 152.32415 * 23 22 20 51 51 H 1.09000 * 115.55766 * 330.26934 * 26 24 23 52 52 H 1.09002 * 117.49918 * 145.01819 * 27 26 24 53 53 H 1.09002 * 117.49754 * 0.02562 * 27 26 24 54 54 H 1.09008 * 117.49673 * 107.47884 * 28 27 26 55 55 H 1.08999 * 117.49942 * 252.47315 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6315 -2.2426 0.9705 6 6 2.1802 -3.0404 2.1551 7 7 1.8312 -4.4542 1.9953 8 6 0.5746 -4.9655 2.5485 9 6 0.8041 -5.4419 3.9596 10 1 1.7874 -5.3706 4.4005 11 6 -0.2417 -5.9680 4.6883 12 7 -1.4392 -6.0544 4.1516 13 14 0.0426 -6.5579 6.4377 14 1 -0.1900 -5.4359 7.3824 15 1 -0.8964 -7.6665 6.7450 16 1 1.4403 -7.0402 6.5765 17 6 2.6660 -5.2845 1.3395 18 8 3.7061 -4.8611 0.8813 19 6 2.3072 -6.7389 1.1756 20 6 3.4155 -7.4534 0.3997 21 1 3.5901 -6.9557 -0.5542 22 6 3.0423 -8.9397 0.1705 23 6 4.4496 -9.5740 -0.0004 24 6 5.3104 -8.7249 0.9595 25 1 5.4343 -9.2478 1.9079 26 6 6.6797 -8.4587 0.3308 27 6 7.7158 -7.7204 1.1808 28 6 7.0393 -7.0061 0.0090 29 8 4.6251 -7.4856 1.1739 30 1 -0.3634 0.4513 0.9233 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3634 -1.0252 -0.0707 33 1 3.0828 1.3431 -0.0709 34 1 1.5899 1.9163 -0.8525 35 1 1.7044 1.8724 0.9232 36 1 1.5611 -0.3871 2.0628 37 1 3.0798 -0.6611 1.1757 38 1 2.0658 -2.6214 0.0454 39 1 0.5471 -2.3474 0.9324 40 1 1.7463 -2.6618 3.0805 41 1 3.2646 -2.9355 2.1926 42 1 -0.1716 -4.1710 2.5500 43 1 0.2201 -5.7959 1.9378 44 1 -2.1747 -6.4247 4.6640 45 1 1.3687 -6.8221 0.6274 46 1 2.1963 -7.1987 2.1576 47 1 2.5274 -9.3536 1.0373 48 1 2.4449 -9.0598 -0.7334 49 1 4.7990 -9.4721 -1.0278 50 1 4.4435 -10.6199 0.3065 51 1 7.0432 -9.2298 -0.3484 52 1 8.7609 -8.0057 1.0607 53 1 7.4220 -7.4247 2.1880 54 1 6.3001 -6.2405 0.2453 55 1 7.6395 -6.8211 -0.8819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930703132.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:18 Heat of formation + Delta-G solvation = -78.775888 kcal Electronic energy + Delta-G solvation = -30868.280832 eV Core-core repulsion = 26905.047167 eV Total energy + Delta-G solvation = -3963.233664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.17960 -40.26829 -38.64799 -37.33570 -36.73147 -34.79293 -33.47413 -32.97118 -32.12804 -29.21086 -28.50653 -28.34203 -26.70870 -24.89084 -24.09537 -23.25522 -23.00954 -22.27586 -21.79049 -20.85774 -19.79200 -18.63301 -18.00611 -17.77566 -17.26120 -16.75751 -16.54995 -16.40361 -16.22417 -16.00304 -15.82043 -15.58823 -15.33680 -14.98871 -14.51090 -14.28722 -14.09974 -13.76567 -13.55737 -13.41939 -13.29828 -13.16437 -13.15295 -12.88170 -12.71763 -12.64499 -12.60547 -12.52746 -12.40319 -12.36254 -12.29162 -12.16118 -12.05979 -12.00911 -11.69834 -11.66573 -11.49714 -11.10201 -10.88562 -10.69105 -10.47520 -10.33471 -9.41349 -9.33421 -8.20168 -6.34301 1.39443 1.42110 1.51544 1.87238 2.30767 2.45168 2.83896 2.97732 3.03689 3.09658 3.60607 3.71306 3.77514 3.90760 4.01792 4.10586 4.11610 4.14882 4.20919 4.23372 4.35005 4.38641 4.44146 4.47092 4.49725 4.51062 4.60327 4.65245 4.67819 4.74217 4.76546 4.78991 4.81643 4.83794 4.93075 4.94949 4.98884 5.00600 5.04649 5.07645 5.15129 5.18464 5.19813 5.26365 5.28683 5.36889 5.44139 5.66618 5.89114 6.02865 6.07634 6.10667 6.32154 6.60754 6.84110 7.33906 7.48551 8.84911 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006425 B = 0.004099 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4357.092842 B = 6829.475605 C =10028.521566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.564 5.564 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.110 4.110 6 C 0.123 3.877 7 N -0.603 5.603 8 C 0.256 3.744 9 C -0.545 4.545 10 H 0.046 0.954 11 C 0.026 3.974 12 N -0.917 5.917 13 Si 0.952 3.048 14 H -0.276 1.276 15 H -0.277 1.277 16 H -0.275 1.275 17 C 0.513 3.487 18 O -0.582 6.582 19 C -0.130 4.130 20 C 0.102 3.898 21 H 0.061 0.939 22 C -0.148 4.148 23 C -0.133 4.133 24 C 0.091 3.909 25 H 0.076 0.924 26 C -0.161 4.161 27 C -0.176 4.176 28 C -0.177 4.177 29 O -0.384 6.384 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.019 0.981 43 H 0.033 0.967 44 H 0.268 0.732 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.134 0.866 52 H 0.112 0.888 53 H 0.073 0.927 54 H 0.075 0.925 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -0.285 -9.700 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.289 5.289 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.149 4.149 6 C -0.001 4.001 7 N -0.334 5.334 8 C 0.135 3.865 9 C -0.584 4.584 10 H 0.064 0.936 11 C -0.174 4.174 12 N -0.556 5.556 13 Si 0.777 3.223 14 H -0.201 1.201 15 H -0.202 1.202 16 H -0.200 1.200 17 C 0.302 3.698 18 O -0.463 6.463 19 C -0.169 4.169 20 C 0.044 3.956 21 H 0.079 0.921 22 C -0.185 4.185 23 C -0.171 4.171 24 C 0.033 3.967 25 H 0.094 0.906 26 C -0.179 4.179 27 C -0.213 4.213 28 C -0.214 4.214 29 O -0.304 6.304 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.037 0.963 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.129 0.871 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.122 0.878 49 H 0.108 0.892 50 H 0.121 0.879 51 H 0.151 0.849 52 H 0.130 0.870 53 H 0.092 0.908 54 H 0.093 0.907 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.856 -0.170 -10.183 13.497 hybrid contribution -0.623 0.219 1.943 2.052 sum 8.233 0.048 -8.240 11.649 Atomic orbital electron populations 1.22448 0.86865 1.02271 1.01046 1.61966 1.08780 1.14929 1.43190 1.22426 1.01019 0.87685 1.01153 1.21953 1.00299 0.92418 0.91576 1.21720 1.00604 0.94591 0.97971 1.21225 0.99945 0.80765 0.98144 1.48219 1.22163 1.08893 1.54081 1.19042 0.80382 0.94306 0.92758 1.21642 0.95389 1.41825 0.99526 0.93609 1.25562 0.94647 0.95494 1.01717 1.69990 1.01072 1.45781 1.38723 0.85651 0.77962 0.78241 0.80401 1.20122 1.20211 1.20003 1.20828 0.82815 0.89030 0.77107 1.90581 1.25755 1.78558 1.51424 1.21805 0.99903 0.91870 1.03353 1.22642 0.83671 0.96076 0.93161 0.92069 1.23331 0.98374 0.92779 1.04029 1.23093 0.93092 1.00468 1.00398 1.22427 0.91084 0.84891 0.98294 0.90588 1.22879 0.95317 0.96208 1.03539 1.22912 0.98175 1.04620 0.95558 1.22810 1.03255 0.95473 0.99889 1.88568 1.36212 1.37764 1.67853 0.95399 0.89940 0.92140 0.91069 0.90095 0.95254 0.94304 0.90489 0.92892 0.92346 0.91085 0.91830 0.96259 0.94953 0.92268 0.87098 0.89168 0.90236 0.87829 0.89218 0.87889 0.84852 0.86962 0.90845 0.90676 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.32 127.69 1.19 1.70 16 2 N -0.56 -14.61 5.02 -948.82 -4.76 -19.38 16 3 C 0.02 0.50 9.57 127.69 1.22 1.72 16 4 C 0.07 1.87 4.96 86.30 0.43 2.29 16 5 C -0.11 -3.73 5.46 30.59 0.17 -3.56 16 6 C 0.12 4.80 5.41 86.38 0.47 5.27 16 7 N -0.60 -26.49 2.46 -826.15 -2.03 -28.52 16 8 C 0.26 12.35 4.97 85.63 0.43 12.78 16 9 C -0.55 -28.77 9.28 25.60 0.24 -28.54 16 10 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 11 C 0.03 1.39 5.46 84.66 0.46 1.85 16 12 N -0.92 -49.93 13.29 21.45 0.28 -49.64 16 13 Si 0.95 42.13 29.54 68.60 2.03 44.15 16 14 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 17 C 0.51 22.47 7.58 87.66 0.66 23.14 16 18 O -0.58 -27.63 15.11 8.34 0.13 -27.50 16 19 C -0.13 -4.89 4.01 29.85 0.12 -4.77 16 20 C 0.10 3.33 2.92 31.26 0.09 3.42 16 21 H 0.06 2.08 8.00 -2.38 -0.02 2.06 16 22 C -0.15 -3.47 6.57 32.05 0.21 -3.26 16 23 C -0.13 -2.64 6.51 31.85 0.21 -2.43 16 24 C 0.09 2.40 3.88 31.06 0.12 2.52 16 25 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 26 C -0.16 -3.79 5.59 -10.77 -0.06 -3.85 16 27 C -0.18 -4.34 10.24 30.60 0.31 -4.03 16 28 C -0.18 -4.90 9.88 30.62 0.30 -4.60 16 29 O -0.38 -13.79 8.46 -137.62 -1.16 -14.96 16 30 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 32 H 0.06 1.57 6.47 -2.39 -0.02 1.56 16 33 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 34 H 0.08 1.35 8.12 -2.39 -0.02 1.34 16 35 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 37 H 0.08 2.12 8.06 -2.38 -0.02 2.10 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 2.03 6.55 -2.38 -0.02 2.01 16 40 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16 41 H 0.06 2.56 7.42 -2.39 -0.02 2.54 16 42 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 43 H 0.03 1.59 6.44 -2.39 -0.02 1.57 16 44 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.11 3.81 7.40 -2.39 -0.02 3.79 16 46 H 0.09 3.74 8.00 -2.39 -0.02 3.72 16 47 H 0.08 1.92 8.06 -2.39 -0.02 1.91 16 48 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 49 H 0.09 1.56 7.85 -2.39 -0.02 1.54 16 50 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.13 2.35 8.09 -2.39 -0.02 2.33 16 52 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 53 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 54 H 0.07 2.75 7.04 -2.38 -0.02 2.73 16 55 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -64.38 434.20 1.87 -62.51 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.82 Total: 33.69 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.57 Total: -0.36 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -6.51 Total: -97.54 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.04 Total: -42.46 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -64.38 1.87 -62.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930703132.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.265 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds