Wall clock time and date at job start Tue Mar 31 2020 22:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.53007 * 109.47244 * 170.00177 * 4 2 1 6 6 C 1.52997 * 109.47020 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.46936 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99751 * 90.00277 * 7 6 5 9 9 C 1.50691 * 109.47419 * 90.00156 * 8 7 6 10 10 H 1.07995 * 120.00385 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00325 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99521 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00567 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46806 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47066 * 119.99605 * 13 11 9 16 16 H 1.48498 * 109.47091 * 240.00175 * 13 11 9 17 17 C 1.34775 * 120.00289 * 269.99747 * 7 6 5 18 18 O 1.21286 * 119.99797 * 0.02562 * 17 7 6 19 19 C 1.50699 * 120.00148 * 179.97438 * 17 7 6 20 20 C 1.52997 * 109.46918 * 180.02562 * 19 17 7 21 21 H 1.09002 * 110.27613 * 54.30409 * 20 19 17 22 22 C 1.54948 * 110.30911 * 176.39070 * 20 19 17 23 23 C 1.55417 * 100.89250 * 155.28692 * 22 20 19 24 24 C 1.54376 * 102.31242 * 325.99543 * 23 22 20 25 25 H 1.09003 * 109.82652 * 261.77105 * 24 23 22 26 26 C 1.52996 * 109.91045 * 140.84047 * 24 23 22 27 27 C 1.53002 * 117.49749 * 248.99070 * 26 24 23 28 28 C 1.52996 * 117.50379 * 180.36662 * 26 24 23 29 29 O 1.43243 * 107.58967 * 21.27959 * 24 23 22 30 30 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 31 31 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 32 32 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 33 33 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 34 34 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 36 36 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 37 37 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 38 38 H 1.09000 * 109.46606 * 300.00058 * 5 4 2 39 39 H 1.08996 * 109.46960 * 59.99716 * 5 4 2 40 40 H 1.09009 * 109.47255 * 299.99592 * 6 5 4 41 41 H 1.08996 * 109.47524 * 60.00015 * 6 5 4 42 42 H 1.09005 * 109.47004 * 209.99919 * 8 7 6 43 43 H 1.08996 * 109.47326 * 329.99123 * 8 7 6 44 44 H 0.97007 * 119.99680 * 179.97438 * 12 11 9 45 45 H 1.08997 * 109.47386 * 300.00308 * 19 17 7 46 46 H 1.09003 * 109.47095 * 60.00447 * 19 17 7 47 47 H 1.08994 * 111.12885 * 273.28423 * 22 20 19 48 48 H 1.08999 * 111.12373 * 37.44614 * 22 20 19 49 49 H 1.08996 * 110.88361 * 207.75300 * 23 22 20 50 50 H 1.09006 * 110.92852 * 84.25209 * 23 22 20 51 51 H 1.09003 * 115.54748 * 34.69098 * 26 24 23 52 52 H 1.08998 * 117.49943 * 359.97438 * 27 26 24 53 53 H 1.09007 * 117.49574 * 145.01711 * 27 26 24 54 54 H 1.08999 * 117.50030 * 214.97755 * 28 26 24 55 55 H 1.09010 * 117.49736 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5046 -0.9553 0.9702 6 6 4.0528 -1.7536 2.1547 7 7 5.4975 -1.9354 1.9942 8 6 6.4261 -0.9460 2.5467 9 6 6.7891 -1.3308 3.9577 10 1 6.3698 -2.2228 4.3991 11 6 7.6558 -0.5435 4.6858 12 7 8.1660 0.5431 4.1485 13 14 8.1053 -1.0200 6.4351 14 1 7.4022 -2.2755 6.8023 15 1 9.5726 -1.2280 6.5300 16 1 7.6979 0.0647 7.3639 17 6 5.9725 -3.0128 1.3384 18 8 5.2037 -3.8316 0.8807 19 6 7.4587 -3.1994 1.1728 20 6 7.7272 -4.4906 0.3973 21 1 7.1801 -4.4857 -0.5455 22 6 9.2457 -4.6557 0.1369 23 6 9.3499 -6.1979 -0.0256 24 6 8.2739 -6.7059 0.9579 25 1 8.7410 -6.9975 1.8986 26 6 7.5372 -7.9021 0.3518 27 6 6.0743 -7.7015 -0.0492 28 6 6.4219 -8.5398 1.1826 29 8 7.3532 -5.6323 1.1848 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 0.4512 0.9233 32 1 -0.3633 -1.0253 -0.0709 33 1 1.6459 1.8948 0.8900 34 1 3.0850 1.3425 -0.0005 35 1 1.6459 1.8949 -0.8899 36 1 1.7976 -0.2247 2.0628 37 1 1.5091 -1.7406 1.1755 38 1 3.7024 -1.4964 0.0450 39 1 3.9910 0.0194 0.9322 40 1 3.8548 -1.2128 3.0802 41 1 3.5663 -2.7283 2.1923 42 1 7.3281 -0.9133 1.9356 43 1 5.9525 0.0357 2.5482 44 1 8.7755 1.0973 4.6608 45 1 7.8722 -2.3535 0.6238 46 1 7.9288 -3.2603 2.1544 47 1 9.5459 -4.1417 -0.7761 48 1 9.8303 -4.3110 0.9899 49 1 10.3388 -6.5531 0.2638 50 1 9.1150 -6.4985 -1.0467 51 1 8.1433 -8.5625 -0.2683 52 1 5.6367 -6.7175 0.1192 53 1 5.7179 -8.2299 -0.9334 54 1 6.2940 -9.6198 1.1088 55 1 6.2132 -8.1075 2.1613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930703133.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:22 Heat of formation + Delta-G solvation = -78.915767 kcal Electronic energy + Delta-G solvation = -30874.111369 eV Core-core repulsion = 26910.871639 eV Total energy + Delta-G solvation = -3963.239730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18495 -40.27554 -38.65157 -37.32433 -36.73418 -34.79442 -33.47588 -32.96795 -32.12752 -29.21385 -28.50905 -28.34769 -26.71161 -24.89490 -24.09972 -23.27764 -23.01280 -22.25219 -21.78394 -20.84905 -19.80047 -18.63993 -18.02985 -17.77543 -17.26109 -16.73403 -16.55636 -16.41341 -16.22315 -16.02559 -15.82141 -15.56233 -15.34239 -14.99824 -14.51147 -14.29670 -14.08938 -13.75561 -13.55608 -13.43347 -13.29235 -13.16477 -13.15721 -12.88318 -12.71925 -12.65430 -12.61346 -12.51680 -12.40568 -12.35948 -12.29815 -12.17814 -12.07048 -12.00781 -11.68123 -11.66090 -11.49121 -11.12372 -10.87185 -10.69535 -10.47973 -10.33108 -9.41700 -9.33349 -8.20516 -6.34526 1.38185 1.41975 1.52409 1.86756 2.30600 2.44913 2.86053 2.95450 3.03647 3.09357 3.60286 3.71386 3.78124 3.90567 4.01744 4.10453 4.11649 4.14698 4.20616 4.22983 4.34979 4.38288 4.44033 4.47099 4.49966 4.51424 4.60751 4.65009 4.67584 4.73929 4.76525 4.79274 4.81929 4.83855 4.93287 4.94662 4.98864 5.00488 5.04585 5.07279 5.15237 5.18542 5.19789 5.26677 5.28652 5.37004 5.43820 5.66667 5.88860 6.02891 6.07428 6.10700 6.31788 6.60573 6.84018 7.33705 7.48098 8.84739 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006436 B = 0.004099 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4349.777013 B = 6829.793812 C =10023.219830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.564 5.564 3 C 0.021 3.979 4 C 0.066 3.934 5 C -0.110 4.110 6 C 0.123 3.877 7 N -0.603 5.603 8 C 0.256 3.744 9 C -0.544 4.544 10 H 0.045 0.955 11 C 0.026 3.974 12 N -0.917 5.917 13 Si 0.952 3.048 14 H -0.277 1.277 15 H -0.274 1.274 16 H -0.277 1.277 17 C 0.513 3.487 18 O -0.582 6.582 19 C -0.130 4.130 20 C 0.102 3.898 21 H 0.061 0.939 22 C -0.147 4.147 23 C -0.133 4.133 24 C 0.091 3.909 25 H 0.077 0.923 26 C -0.160 4.160 27 C -0.177 4.177 28 C -0.177 4.177 29 O -0.385 6.385 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.020 0.980 44 H 0.268 0.732 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.135 0.865 52 H 0.074 0.926 53 H 0.103 0.897 54 H 0.112 0.888 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -7.812 -9.759 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.289 5.289 3 C -0.127 4.127 4 C -0.063 4.063 5 C -0.149 4.149 6 C -0.001 4.001 7 N -0.333 5.333 8 C 0.135 3.865 9 C -0.583 4.583 10 H 0.064 0.936 11 C -0.174 4.174 12 N -0.556 5.556 13 Si 0.778 3.222 14 H -0.201 1.201 15 H -0.200 1.200 16 H -0.203 1.203 17 C 0.302 3.698 18 O -0.464 6.464 19 C -0.169 4.169 20 C 0.045 3.955 21 H 0.079 0.921 22 C -0.185 4.185 23 C -0.171 4.171 24 C 0.033 3.967 25 H 0.095 0.905 26 C -0.178 4.178 27 C -0.214 4.214 28 C -0.214 4.214 29 O -0.305 6.305 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.129 0.871 46 H 0.109 0.891 47 H 0.122 0.878 48 H 0.098 0.902 49 H 0.121 0.879 50 H 0.107 0.893 51 H 0.152 0.848 52 H 0.093 0.907 53 H 0.121 0.879 54 H 0.130 0.870 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.954 -8.292 -10.238 13.501 hybrid contribution 0.015 0.661 1.943 2.053 sum -2.939 -7.631 -8.294 11.647 Atomic orbital electron populations 1.22426 0.85917 1.02777 1.01152 1.61960 1.09183 1.14530 1.43189 1.22455 1.00688 0.88303 1.01239 1.21946 0.94219 0.98484 0.91607 1.21727 0.95428 0.99782 0.97966 1.21227 0.80730 0.99977 0.98156 1.48217 1.07178 1.23867 1.54071 1.19047 0.88054 0.86648 0.92776 1.21664 1.27602 1.09480 0.99531 0.93635 1.25563 0.95519 0.94639 1.01715 1.70005 1.31862 1.15024 1.38689 0.85599 0.78229 0.78106 0.80298 1.20133 1.19980 1.20288 1.20838 0.91747 0.80107 0.77092 1.90582 1.60207 1.44128 1.51490 1.21805 0.92760 0.98993 1.03382 1.22641 0.95342 0.84626 0.92936 0.92077 1.23346 0.93937 0.97221 1.03983 1.23098 0.99554 0.94185 1.00227 1.22425 0.89204 0.86761 0.98288 0.90518 1.22851 0.91412 0.99756 1.03815 1.22808 0.98137 1.01369 0.99072 1.22888 1.03710 0.99379 0.95378 1.88561 1.52317 1.22934 1.66647 0.90110 0.95247 0.91064 0.95317 0.92114 0.89999 0.94306 0.90493 0.92889 0.92297 0.91068 0.91850 0.94936 0.96226 0.92276 0.87081 0.89135 0.87835 0.90204 0.87890 0.89268 0.84751 0.90704 0.87882 0.87018 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.57 127.69 1.22 1.72 16 2 N -0.56 -14.61 5.02 -948.83 -4.76 -19.37 16 3 C 0.02 0.50 9.40 127.69 1.20 1.70 16 4 C 0.07 1.86 4.96 86.31 0.43 2.29 16 5 C -0.11 -3.73 5.47 30.60 0.17 -3.56 16 6 C 0.12 4.80 5.41 86.38 0.47 5.26 16 7 N -0.60 -26.48 2.46 -826.16 -2.03 -28.51 16 8 C 0.26 12.33 4.97 85.63 0.43 12.75 16 9 C -0.54 -28.73 9.28 25.60 0.24 -28.49 16 10 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 11 C 0.03 1.38 5.46 84.65 0.46 1.84 16 12 N -0.92 -49.89 13.29 21.45 0.28 -49.61 16 13 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 14 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 17 C 0.51 22.46 7.58 87.66 0.66 23.13 16 18 O -0.58 -27.67 15.14 6.49 0.10 -27.57 16 19 C -0.13 -4.89 3.99 29.85 0.12 -4.77 16 20 C 0.10 3.33 2.91 31.26 0.09 3.42 16 21 H 0.06 2.09 7.96 -2.39 -0.02 2.07 16 22 C -0.15 -3.46 6.58 32.09 0.21 -3.25 16 23 C -0.13 -2.64 6.54 31.89 0.21 -2.43 16 24 C 0.09 2.39 3.88 31.06 0.12 2.51 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 C -0.16 -3.75 5.56 -10.80 -0.06 -3.81 16 27 C -0.18 -4.86 9.88 30.59 0.30 -4.56 16 28 C -0.18 -4.42 10.21 30.59 0.31 -4.11 16 29 O -0.38 -13.77 8.54 -139.44 -1.19 -14.96 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 1.35 8.12 -2.38 -0.02 1.33 16 33 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.06 1.58 6.30 -2.39 -0.02 1.57 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.06 8.12 -2.38 -0.02 1.04 16 37 H 0.08 2.12 8.06 -2.39 -0.02 2.10 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 2.04 6.47 -2.39 -0.02 2.03 16 40 H 0.07 2.77 8.07 -2.38 -0.02 2.75 16 41 H 0.06 2.55 7.42 -2.39 -0.02 2.54 16 42 H 0.03 1.59 6.44 -2.38 -0.02 1.58 16 43 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 44 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 45 H 0.11 3.81 7.40 -2.39 -0.02 3.79 16 46 H 0.09 3.75 8.00 -2.39 -0.02 3.73 16 47 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.08 1.92 8.06 -2.39 -0.02 1.90 16 49 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.09 1.55 7.85 -2.38 -0.02 1.53 16 51 H 0.13 2.34 8.13 -2.39 -0.02 2.32 16 52 H 0.07 2.71 7.07 -2.39 -0.02 2.70 16 53 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 54 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 55 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -64.44 434.19 1.83 -62.61 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.82 Total: 33.58 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 6.58 Total: -0.36 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -6.51 Total: -97.48 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.09 Total: -42.53 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.44 1.83 -62.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930703133.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.308 kcal (2) G-P(sol) polarization free energy of solvation -64.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds