Wall clock time and date at job start Tue Mar 31 2020 22:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 5 5 C 1.52997 * 109.47053 * 66.04702 * 4 2 1 6 6 C 1.53001 * 109.47019 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47143 * 179.97438 * 6 5 4 8 8 C 1.46492 * 119.99939 * 269.99774 * 7 6 5 9 9 C 1.50707 * 109.46870 * 90.00411 * 8 7 6 10 10 H 1.07997 * 119.99954 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99761 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00022 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99773 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47164 * 89.99920 * 13 11 9 15 15 H 1.48498 * 109.47086 * 210.00201 * 13 11 9 16 16 H 1.48502 * 109.46988 * 329.99700 * 13 11 9 17 17 C 1.34778 * 119.99417 * 90.00033 * 7 6 5 18 18 O 1.21277 * 120.00447 * 0.02562 * 17 7 6 19 19 C 1.50708 * 119.99316 * 180.02562 * 17 7 6 20 20 C 1.53000 * 109.46649 * 179.97438 * 19 17 7 21 21 H 1.08998 * 110.55337 * 305.70264 * 20 19 17 22 22 C 1.54996 * 110.61575 * 182.82329 * 20 19 17 23 23 C 1.54992 * 102.01110 * 204.59780 * 22 20 19 24 24 C 1.54100 * 104.25118 * 20.66440 * 23 22 20 25 25 H 1.08996 * 109.87869 * 242.74270 * 24 23 22 26 26 C 1.52997 * 110.00338 * 121.66305 * 24 23 22 27 27 C 1.52998 * 117.50074 * 249.26312 * 26 24 23 28 28 C 1.52997 * 60.00001 * 252.50638 * 27 26 24 29 29 O 1.43744 * 107.29677 * 2.16681 * 24 23 22 30 30 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 31 31 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 33 33 H 1.09001 * 109.47083 * 63.95813 * 3 2 1 34 34 H 1.08995 * 109.47328 * 183.95069 * 3 2 1 35 35 H 1.08993 * 109.47494 * 303.95726 * 3 2 1 36 36 H 1.09002 * 109.46783 * 186.04686 * 4 2 1 37 37 H 1.09005 * 109.46676 * 306.04728 * 4 2 1 38 38 H 1.09002 * 109.47313 * 299.99660 * 5 4 2 39 39 H 1.08994 * 109.47205 * 59.99990 * 5 4 2 40 40 H 1.09002 * 109.46818 * 299.99985 * 6 5 4 41 41 H 1.08994 * 109.47122 * 59.99961 * 6 5 4 42 42 H 1.08999 * 109.47223 * 209.99843 * 8 7 6 43 43 H 1.08995 * 109.47520 * 330.00612 * 8 7 6 44 44 H 0.97005 * 119.99390 * 180.02562 * 12 11 9 45 45 H 1.09000 * 109.46884 * 299.99583 * 19 17 7 46 46 H 1.08997 * 109.46708 * 60.00182 * 19 17 7 47 47 H 1.09000 * 110.90532 * 322.67169 * 22 20 19 48 48 H 1.08998 * 110.91279 * 86.27623 * 22 20 19 49 49 H 1.09002 * 110.34150 * 262.02347 * 23 22 20 50 50 H 1.08999 * 110.68617 * 139.47465 * 23 22 20 51 51 H 1.09007 * 115.55297 * 34.96694 * 26 24 23 52 52 H 1.09007 * 117.49475 * 359.97438 * 27 26 24 53 53 H 1.08998 * 117.50601 * 145.01952 * 27 26 24 54 54 H 1.08996 * 117.50188 * 252.50814 * 28 27 26 55 55 H 1.08999 * 117.50286 * 107.48517 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1804 -3.0405 2.1548 7 7 1.8314 -4.4544 1.9950 8 6 0.5750 -4.9657 2.5481 9 6 -0.5162 -4.8400 1.5162 10 1 -0.2958 -4.4207 0.5457 11 6 -1.7958 -5.2603 1.8113 12 7 -2.0640 -5.7713 2.9930 13 14 -3.1484 -5.1038 0.5325 14 1 -3.1985 -6.3399 -0.2889 15 1 -4.4535 -4.9089 1.2137 16 1 -2.8686 -3.9381 -0.3439 17 6 2.6663 -5.2845 1.3390 18 8 3.7067 -4.8613 0.8815 19 6 2.3070 -6.7388 1.1741 20 6 3.4154 -7.4531 0.3982 21 1 3.6106 -6.9445 -0.5458 22 6 3.0401 -8.9366 0.1516 23 6 4.4317 -9.5970 -0.0203 24 6 5.4059 -8.6094 0.6506 25 1 6.1072 -8.2212 -0.0879 26 6 6.1701 -9.3107 1.7753 27 6 5.8530 -8.8927 3.2125 28 6 7.1784 -8.4785 2.5701 29 8 4.6197 -7.5339 1.1906 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7044 1.8723 0.9233 34 1 3.0827 1.3433 -0.0708 35 1 1.5898 1.9163 -0.8523 36 1 3.0798 -0.6611 1.1756 37 1 1.5611 -0.3872 2.0628 38 1 0.5473 -2.3476 0.9323 39 1 2.0659 -2.6213 0.0452 40 1 3.2647 -2.9355 2.1924 41 1 1.7465 -2.6619 3.0802 42 1 0.6980 -6.0138 2.8209 43 1 0.3062 -4.3890 3.4331 44 1 -2.9642 -6.0673 3.2004 45 1 2.1955 -7.1991 2.1558 46 1 1.3688 -6.8212 0.6254 47 1 2.5166 -9.3535 1.0119 48 1 2.4425 -9.0413 -0.7539 49 1 4.6700 -9.7088 -1.0781 50 1 4.4634 -10.5643 0.4812 51 1 6.4117 -10.3586 1.5973 52 1 5.1001 -8.1177 3.3567 53 1 5.8857 -9.6656 3.9804 54 1 8.0831 -8.9790 2.9153 55 1 7.2974 -7.4314 2.2917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930703134.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:26 Heat of formation + Delta-G solvation = -77.780550 kcal Electronic energy + Delta-G solvation = -30952.630777 eV Core-core repulsion = 26989.440274 eV Total energy + Delta-G solvation = -3963.190503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.17226 -40.27321 -38.64134 -37.38602 -36.75438 -34.71969 -33.47943 -32.94867 -32.10895 -29.24221 -28.50389 -28.33981 -26.74336 -24.85760 -24.08727 -23.28173 -23.00258 -22.08844 -21.75603 -21.17948 -19.84748 -18.58923 -18.06268 -17.41417 -17.17936 -16.68398 -16.57043 -16.48336 -16.31821 -16.10275 -15.73944 -15.68306 -15.22959 -14.97717 -14.47937 -14.42288 -14.27266 -13.82264 -13.61427 -13.37224 -13.25097 -13.12075 -12.91045 -12.87599 -12.75604 -12.64044 -12.61417 -12.59042 -12.38707 -12.36662 -12.34729 -12.20074 -12.05335 -12.01021 -11.63858 -11.60997 -11.37933 -11.06142 -10.93469 -10.68341 -10.49423 -10.42434 -9.42931 -9.31965 -8.17155 -6.30334 1.41708 1.44780 1.53281 1.83862 2.32477 2.46068 2.82854 2.97436 3.04212 3.13509 3.61583 3.68600 3.80432 3.95949 4.00774 4.08260 4.09983 4.15959 4.16876 4.23838 4.30451 4.39713 4.45906 4.48152 4.50904 4.52545 4.61361 4.63694 4.64924 4.73774 4.75827 4.77482 4.82613 4.86057 4.95170 4.96855 4.98075 5.01147 5.01878 5.06186 5.18305 5.19239 5.23685 5.27496 5.29105 5.38751 5.39292 5.70808 5.89251 6.03707 6.09476 6.13394 6.15194 6.61317 6.85781 7.35610 7.47591 8.88565 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.003548 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.074358 B = 7890.379584 C =10080.646954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.566 5.566 3 C 0.026 3.974 4 C 0.067 3.933 5 C -0.113 4.113 6 C 0.125 3.875 7 N -0.602 5.602 8 C 0.253 3.747 9 C -0.535 4.535 10 H 0.054 0.946 11 C 0.026 3.974 12 N -0.920 5.920 13 Si 0.949 3.051 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.513 3.487 18 O -0.586 6.586 19 C -0.122 4.122 20 C 0.097 3.903 21 H 0.058 0.942 22 C -0.145 4.145 23 C -0.137 4.137 24 C 0.091 3.909 25 H 0.063 0.937 26 C -0.152 4.152 27 C -0.174 4.174 28 C -0.177 4.177 29 O -0.379 6.379 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.030 0.970 43 H 0.018 0.982 44 H 0.267 0.733 45 H 0.094 0.906 46 H 0.110 0.890 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.138 0.862 52 H 0.075 0.925 53 H 0.107 0.893 54 H 0.113 0.887 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.542 -1.889 -3.738 11.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.291 5.291 3 C -0.122 4.122 4 C -0.061 4.061 5 C -0.152 4.152 6 C 0.001 3.999 7 N -0.332 5.332 8 C 0.132 3.868 9 C -0.573 4.573 10 H 0.072 0.928 11 C -0.175 4.175 12 N -0.559 5.559 13 Si 0.774 3.226 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.196 1.196 17 C 0.303 3.697 18 O -0.468 6.468 19 C -0.161 4.161 20 C 0.039 3.961 21 H 0.076 0.924 22 C -0.183 4.183 23 C -0.174 4.174 24 C 0.033 3.967 25 H 0.081 0.919 26 C -0.170 4.170 27 C -0.211 4.211 28 C -0.214 4.214 29 O -0.299 6.299 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.128 0.872 47 H 0.097 0.903 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.114 0.886 51 H 0.155 0.845 52 H 0.093 0.907 53 H 0.125 0.875 54 H 0.131 0.869 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.134 -1.817 -4.089 11.999 hybrid contribution -1.473 0.581 0.265 1.605 sum 9.661 -1.236 -3.824 10.463 Atomic orbital electron populations 1.22416 0.87146 1.01832 1.01140 1.61944 1.08528 1.15055 1.43535 1.22417 1.01029 0.87581 1.01129 1.21973 1.00208 0.92450 0.91510 1.21750 1.01101 0.94447 0.97873 1.21265 0.99789 0.80622 0.98213 1.48218 1.21348 1.08976 1.54682 1.19103 0.79588 0.94623 0.93475 1.21612 0.94127 1.41485 1.00097 0.92804 1.25564 1.00384 0.94587 0.96932 1.70012 1.21779 1.42151 1.21999 0.85694 0.78703 0.78785 0.79390 1.19801 1.20919 1.19638 1.20810 0.82616 0.89239 0.77040 1.90583 1.26304 1.78859 1.51031 1.21654 0.99737 0.91524 1.03218 1.22787 0.84199 0.95924 0.93173 0.92363 1.23188 0.98305 0.93106 1.03673 1.22954 0.92870 0.99413 1.02164 1.22357 0.93130 0.87072 0.94101 0.91866 1.22631 1.02356 0.99895 0.92101 1.22805 0.99142 1.03654 0.95512 1.22938 0.93951 0.99992 1.04530 1.88953 1.32373 1.53181 1.55397 0.90224 0.92760 0.95114 0.95105 0.90874 0.90343 0.90254 0.94147 0.92220 0.93896 0.91302 0.90519 0.95233 0.96425 0.92438 0.88819 0.87173 0.90302 0.88681 0.89167 0.88604 0.84458 0.90669 0.87509 0.86860 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.40 127.69 1.20 1.83 16 2 N -0.57 -16.23 5.02 -948.84 -4.76 -20.99 16 3 C 0.03 0.56 9.57 127.69 1.22 1.78 16 4 C 0.07 2.01 4.96 86.30 0.43 2.44 16 5 C -0.11 -4.18 5.47 30.59 0.17 -4.02 16 6 C 0.12 4.80 5.45 86.38 0.47 5.27 16 7 N -0.60 -26.17 2.46 -826.15 -2.03 -28.20 16 8 C 0.25 12.07 5.01 85.64 0.43 12.50 16 9 C -0.53 -27.11 8.82 25.60 0.23 -26.88 16 10 H 0.05 2.80 7.42 -2.91 -0.02 2.78 16 11 C 0.03 1.32 5.46 84.66 0.46 1.78 16 12 N -0.92 -49.79 13.29 21.45 0.28 -49.50 16 13 Si 0.95 41.04 29.54 68.60 2.03 43.07 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 17 C 0.51 22.41 7.60 87.66 0.67 23.07 16 18 O -0.59 -27.92 15.19 4.76 0.07 -27.84 16 19 C -0.12 -4.59 4.02 29.85 0.12 -4.47 16 20 C 0.10 3.19 2.77 31.28 0.09 3.27 16 21 H 0.06 2.05 7.96 -2.39 -0.02 2.03 16 22 C -0.15 -3.54 6.60 31.96 0.21 -3.33 16 23 C -0.14 -2.74 6.65 31.65 0.21 -2.53 16 24 C 0.09 2.33 3.78 30.97 0.12 2.45 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 C -0.15 -3.31 5.55 -10.80 -0.06 -3.37 16 27 C -0.17 -4.28 9.88 30.59 0.30 -3.98 16 28 C -0.18 -4.03 10.21 30.59 0.31 -3.72 16 29 O -0.38 -13.05 8.80 -141.20 -1.24 -14.29 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.77 6.30 -2.38 -0.02 1.75 16 32 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 2.23 8.06 -2.39 -0.02 2.21 16 37 H 0.04 1.14 8.12 -2.38 -0.02 1.13 16 38 H 0.06 2.45 5.59 -2.39 -0.01 2.44 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 2.64 7.42 -2.39 -0.02 2.62 16 41 H 0.08 2.75 7.89 -2.39 -0.02 2.73 16 42 H 0.03 1.46 6.44 -2.39 -0.02 1.44 16 43 H 0.02 0.89 7.89 -2.39 -0.02 0.88 16 44 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 45 H 0.09 3.53 7.40 -2.39 -0.02 3.51 16 46 H 0.11 4.22 8.00 -2.39 -0.02 4.20 16 47 H 0.08 1.94 8.06 -2.39 -0.02 1.92 16 48 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 50 H 0.10 1.58 7.60 -2.39 -0.02 1.56 16 51 H 0.14 2.20 7.99 -2.38 -0.02 2.18 16 52 H 0.07 2.36 7.06 -2.38 -0.02 2.34 16 53 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 54 H 0.11 1.98 8.14 -2.39 -0.02 1.97 16 55 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -62.77 432.02 1.75 -61.02 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.83 Total: 34.66 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 6.57 Total: 2.09 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -6.51 Total: -98.69 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.17 Total: -42.13 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -62.77 1.75 -61.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930703134.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.763 kcal (2) G-P(sol) polarization free energy of solvation -62.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds