Wall clock time and date at job start Tue Mar 31 2020 22:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00054 * 2 1 4 4 C 1.50698 * 109.47385 * 269.99845 * 3 2 1 5 5 H 1.07996 * 119.99665 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99904 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00154 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99707 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47389 * 119.99954 * 8 6 4 11 11 H 1.48503 * 109.46736 * 240.00176 * 8 6 4 12 12 C 1.34774 * 120.00079 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00130 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00087 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47159 * 179.97438 * 14 12 2 16 16 N 1.46903 * 109.47223 * 180.02562 * 15 14 12 17 17 C 1.46846 * 110.99717 * 293.95202 * 16 15 14 18 18 C 1.53036 * 109.52384 * 174.15896 * 17 16 15 19 19 C 1.53123 * 109.27788 * 59.18000 * 18 17 16 20 20 C 1.53124 * 109.15980 * 302.34618 * 19 18 17 21 21 H 1.08992 * 109.53604 * 297.69218 * 20 19 18 22 22 C 1.53003 * 109.50206 * 177.59165 * 20 19 18 23 23 C 1.53175 * 109.54327 * 180.02562 * 22 20 19 24 24 C 1.53096 * 109.15636 * 183.24441 * 23 22 20 25 25 O 1.42901 * 109.48947 * 57.47536 * 24 23 22 26 26 C 1.42904 * 114.09818 * 298.88719 * 25 24 23 27 27 C 1.53093 * 109.41160 * 61.15604 * 26 25 24 28 28 C 1.46842 * 111.00077 * 169.74501 * 16 15 14 29 29 H 1.08996 * 109.47232 * 269.99875 * 1 2 3 30 30 H 1.08999 * 109.46863 * 30.00382 * 1 2 3 31 31 H 1.09009 * 109.46647 * 149.99595 * 1 2 3 32 32 H 1.09009 * 109.46707 * 30.00175 * 3 2 1 33 33 H 1.09002 * 109.47214 * 149.99519 * 3 2 1 34 34 H 0.96998 * 120.00177 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47253 * 60.00154 * 14 12 2 36 36 H 1.08996 * 109.47581 * 299.99837 * 14 12 2 37 37 H 1.08994 * 109.47576 * 59.99992 * 15 14 12 38 38 H 1.09006 * 109.47230 * 299.99748 * 15 14 12 39 39 H 1.08999 * 109.46089 * 54.14588 * 17 16 15 40 40 H 1.08998 * 109.46294 * 294.17617 * 17 16 15 41 41 H 1.09000 * 109.50632 * 179.12292 * 18 17 16 42 42 H 1.09006 * 109.50216 * 299.24086 * 18 17 16 43 43 H 1.09000 * 109.52181 * 62.25097 * 19 18 17 44 44 H 1.08997 * 109.52376 * 182.44203 * 19 18 17 45 45 H 1.08995 * 109.54192 * 300.19925 * 22 20 19 46 46 H 1.09005 * 109.51860 * 303.06024 * 23 22 20 47 47 H 1.08998 * 109.52334 * 63.24605 * 23 22 20 48 48 H 1.08993 * 109.41074 * 297.49211 * 24 23 22 49 49 H 1.09001 * 109.49391 * 177.50560 * 24 23 22 50 50 H 1.08998 * 109.47799 * 301.17600 * 26 25 24 51 51 H 1.08994 * 109.49067 * 181.14574 * 26 25 24 52 52 H 1.09001 * 109.52247 * 182.48218 * 27 26 25 53 53 H 1.09004 * 109.57150 * 62.33215 * 27 26 25 54 54 H 1.09006 * 109.46447 * 305.84971 * 28 16 15 55 55 H 1.08994 * 109.46873 * 65.82005 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0958 -2.2416 6 6 3.1261 2.8780 -1.6726 7 7 3.5533 3.6181 -0.6730 8 14 3.4368 3.4176 -3.4338 9 1 2.8600 2.4170 -4.3672 10 1 2.7988 4.7381 -3.6669 11 1 4.8993 3.5263 -3.6674 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0005 16 7 1.6452 -4.9074 -0.0001 17 6 0.8997 -5.0852 1.2525 18 6 0.0351 -6.3444 1.1587 19 6 0.9341 -7.5570 0.9015 20 6 1.7352 -7.3253 -0.3827 21 1 1.0520 -7.2344 -1.2270 22 6 2.6803 -8.5058 -0.6152 23 6 3.4827 -8.2746 -1.8993 24 6 4.3656 -9.4964 -2.1668 25 8 3.5480 -10.6647 -2.2585 26 6 2.8119 -10.9566 -1.0688 27 6 1.8649 -9.7945 -0.7584 28 6 2.5505 -6.0375 -0.2442 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5140 32 1 1.6083 2.0284 0.5139 33 1 3.1499 1.1384 0.5139 34 1 4.0295 4.4443 -0.8502 35 1 0.7591 -2.5303 -0.8897 36 1 0.7584 -2.5299 0.8902 37 1 3.0063 -3.5775 0.8904 38 1 3.0063 -3.5774 -0.8895 39 1 0.2613 -4.2181 1.4213 40 1 1.6006 -5.1868 2.0810 41 1 -0.5063 -6.4847 2.0943 42 1 -0.6755 -6.2378 0.3390 43 1 1.6189 -7.6870 1.7395 44 1 0.3187 -8.4498 0.7909 45 1 3.3629 -8.5981 0.2295 46 1 2.7982 -8.1313 -2.7356 47 1 4.1083 -7.3896 -1.7837 48 1 5.0778 -9.6143 -1.3502 49 1 4.9061 -9.3567 -3.1030 50 1 3.5038 -11.0936 -0.2378 51 1 2.2330 -11.8686 -1.2139 52 1 1.3346 -9.9954 0.1724 53 1 1.1461 -9.6825 -1.5702 54 1 3.1110 -5.8622 -1.1625 55 1 3.2437 -6.1347 0.5913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933083710.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:22 Heat of formation + Delta-G solvation = -122.801810 kcal Electronic energy + Delta-G solvation = -30191.428470 eV Core-core repulsion = 26226.285699 eV Total energy + Delta-G solvation = -3965.142772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.09314 -40.60461 -39.42864 -36.70288 -36.27448 -34.76166 -34.05922 -32.26177 -31.61505 -30.78540 -29.53625 -27.34056 -26.33686 -25.92648 -24.92359 -24.02773 -23.16211 -22.22835 -20.87233 -20.64343 -19.87942 -18.71628 -18.07760 -17.20492 -17.09057 -16.91284 -16.79763 -16.49928 -16.27851 -15.76789 -15.62856 -15.58154 -15.16759 -14.79950 -14.72183 -14.47671 -14.30105 -14.04702 -13.90023 -13.70858 -13.52895 -13.43723 -13.25639 -13.12172 -12.96494 -12.81213 -12.71581 -12.55171 -12.42453 -12.23241 -12.22023 -12.10612 -11.83772 -11.79229 -11.68546 -11.46744 -11.31207 -11.05067 -10.87177 -10.66531 -10.60794 -10.36302 -9.42552 -9.32377 -8.23962 -6.38885 1.35188 1.37619 1.49662 1.83193 2.27583 2.40973 2.92408 3.01480 3.05398 3.61858 3.69566 3.81533 3.86796 3.95941 4.04995 4.11183 4.12412 4.15232 4.22914 4.33184 4.40551 4.42439 4.45533 4.53590 4.56364 4.59790 4.69189 4.71627 4.74141 4.80027 4.81664 4.84770 4.90653 4.93482 4.95930 4.99645 5.02004 5.04362 5.07601 5.11843 5.17056 5.19877 5.21849 5.23347 5.39492 5.42157 5.55331 5.59688 5.83313 6.04782 6.05182 6.17215 6.29730 6.68610 6.78725 7.26875 7.47766 8.83279 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.002075 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.289440 B =13487.880014 C =14713.292039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.114 4.114 15 C 0.082 3.918 16 N -0.537 5.537 17 C 0.044 3.956 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.066 4.066 21 H 0.073 0.927 22 C -0.079 4.079 23 C -0.152 4.152 24 C 0.058 3.942 25 O -0.407 6.407 26 C 0.054 3.946 27 C -0.144 4.144 28 C 0.059 3.941 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.024 0.976 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.022 0.978 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.055 0.945 51 H 0.103 0.897 52 H 0.090 0.910 53 H 0.066 0.934 54 H 0.069 0.931 55 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.400 -29.551 3.064 31.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.153 4.153 15 C -0.047 4.047 16 N -0.261 5.261 17 C -0.083 4.083 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.085 4.085 21 H 0.092 0.908 22 C -0.098 4.098 23 C -0.190 4.190 24 C -0.018 4.018 25 O -0.326 6.326 26 C -0.022 4.022 27 C -0.181 4.181 28 C -0.069 4.069 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.042 0.958 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.115 0.885 50 H 0.073 0.927 51 H 0.121 0.879 52 H 0.109 0.891 53 H 0.085 0.915 54 H 0.087 0.913 55 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.072 -29.463 2.574 30.936 hybrid contribution 1.366 1.263 0.173 1.868 sum -7.706 -28.200 2.747 29.363 Atomic orbital electron populations 1.21943 0.77744 1.04066 1.02612 1.48209 1.08515 1.06392 1.71158 1.18760 0.91075 0.80523 0.96047 1.21726 1.36737 1.06472 0.93022 0.92904 1.25896 0.94934 0.96468 1.02111 1.70056 1.39008 1.14813 1.33002 0.85342 0.77879 0.78434 0.78998 1.19110 1.19282 1.20752 1.21394 0.87794 0.86756 0.75786 1.90630 1.16784 1.88295 1.52716 1.21547 0.98827 0.88802 1.06168 1.21578 0.94269 0.88359 1.00488 1.61926 1.27532 1.01066 1.35560 1.22299 0.96826 1.00014 0.89165 1.21567 0.97643 0.92937 1.02736 1.21677 0.98381 0.98560 0.96537 1.21107 0.96477 0.91944 0.98992 0.90846 1.21165 0.96771 0.94531 0.97336 1.22273 0.99642 0.98659 0.98409 1.22651 0.92269 0.84334 1.02577 1.87902 1.61282 1.45424 1.38018 1.22752 0.94009 0.98272 0.87179 1.22224 0.98493 0.94232 1.03192 1.22198 0.93901 0.90610 1.00170 0.91051 0.91643 0.88676 0.95836 0.98561 0.92388 0.86734 0.86742 0.95967 0.92077 0.89903 0.95656 0.90006 0.91087 0.92373 0.90025 0.91123 0.91623 0.90789 0.92712 0.88543 0.92679 0.87863 0.89108 0.91483 0.91281 0.95621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 10.24 127.77 1.31 3.63 16 2 N -0.61 -26.36 2.86 -851.12 -2.43 -28.79 16 3 C 0.26 14.21 5.16 85.63 0.44 14.65 16 4 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.00 0.27 5.46 84.66 0.46 0.74 16 7 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 8 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 C 0.49 20.81 7.67 87.66 0.67 21.49 16 13 O -0.60 -31.88 15.56 -3.05 -0.05 -31.93 16 14 C -0.11 -3.19 4.19 29.85 0.12 -3.07 16 15 C 0.08 2.33 4.25 86.30 0.37 2.69 16 16 N -0.54 -11.75 4.66 -896.37 -4.17 -15.92 16 17 C 0.04 0.80 5.29 86.33 0.46 1.25 16 18 C -0.11 -1.46 6.09 30.65 0.19 -1.27 16 19 C -0.11 -1.38 4.87 30.68 0.15 -1.23 16 20 C -0.07 -0.97 1.94 -10.74 -0.02 -0.99 16 21 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 22 C -0.08 -1.03 1.86 -10.67 -0.02 -1.05 16 23 C -0.15 -2.25 4.98 30.69 0.15 -2.09 16 24 C 0.06 0.85 6.84 72.01 0.49 1.35 16 25 O -0.41 -7.14 10.77 -148.98 -1.60 -8.74 16 26 C 0.05 0.65 6.84 72.01 0.49 1.14 16 27 C -0.14 -1.56 4.98 30.68 0.15 -1.41 16 28 C 0.06 1.16 4.37 86.33 0.38 1.54 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 31 H 0.09 2.14 6.44 -2.38 -0.02 2.12 16 32 H 0.02 1.31 8.07 -2.38 -0.02 1.29 16 33 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.11 2.84 7.40 -2.38 -0.02 2.83 16 36 H 0.11 2.55 6.40 -2.39 -0.02 2.53 16 37 H 0.02 0.71 8.08 -2.39 -0.02 0.69 16 38 H 0.06 1.99 7.94 -2.38 -0.02 1.97 16 39 H 0.08 1.38 6.22 -2.39 -0.01 1.37 16 40 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.75 6.66 -2.39 -0.02 0.74 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.07 1.13 6.65 -2.39 -0.02 1.11 16 48 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 50 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.09 0.71 6.69 -2.39 -0.02 0.69 16 53 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.07 1.46 6.43 -2.38 -0.02 1.44 16 55 H 0.03 0.53 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -75.86 415.00 0.93 -74.93 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.83 Total: 13.76 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 6.04 Total: 5.81 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -6.32 Total: -101.42 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.65 Total: -40.67 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -75.86 0.93 -74.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933083710.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.873 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds