Wall clock time and date at job start Tue Mar 31 2020 22:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99699 * 2 1 4 4 C 1.50700 * 109.47423 * 270.00297 * 3 2 1 5 5 H 1.08000 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99822 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99917 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99767 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46746 * 90.00540 * 8 6 4 10 10 H 1.48498 * 109.46970 * 209.99640 * 8 6 4 11 11 H 1.48495 * 109.47414 * 330.00091 * 8 6 4 12 12 C 1.34777 * 119.99971 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99826 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00199 * 359.97438 * 12 2 1 15 15 C 1.52995 * 109.47217 * 180.02562 * 14 12 2 16 16 N 1.46898 * 109.47282 * 179.97438 * 15 14 12 17 17 C 1.46852 * 110.99441 * 65.79368 * 16 15 14 18 18 C 1.53041 * 109.52177 * 185.83916 * 17 16 15 19 19 C 1.53206 * 109.29832 * 300.82357 * 18 17 16 20 20 C 1.53114 * 109.11920 * 57.62704 * 19 18 17 21 21 H 1.09002 * 109.50377 * 62.32749 * 20 19 18 22 22 C 1.53002 * 109.50418 * 182.40625 * 20 19 18 23 23 C 1.53179 * 109.53855 * 299.47696 * 22 20 19 24 24 C 1.53097 * 109.16176 * 183.15101 * 23 22 20 25 25 O 1.42908 * 109.41359 * 57.60731 * 24 23 22 26 26 C 1.42898 * 114.09711 * 298.84188 * 25 24 23 27 27 C 1.53097 * 109.41686 * 61.16170 * 26 25 24 28 28 C 1.46845 * 111.00251 * 190.00084 * 16 15 14 29 29 H 1.08997 * 109.46384 * 269.99320 * 1 2 3 30 30 H 1.08997 * 109.47041 * 29.99708 * 1 2 3 31 31 H 1.08997 * 109.47073 * 149.99698 * 1 2 3 32 32 H 1.08995 * 109.47017 * 30.00937 * 3 2 1 33 33 H 1.09000 * 109.46598 * 150.00143 * 3 2 1 34 34 H 0.96999 * 119.99646 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.46759 * 59.99802 * 14 12 2 36 36 H 1.09004 * 109.46938 * 300.00145 * 14 12 2 37 37 H 1.09004 * 109.46906 * 59.99665 * 15 14 12 38 38 H 1.09005 * 109.47214 * 300.00465 * 15 14 12 39 39 H 1.08998 * 109.45960 * 305.85092 * 17 16 15 40 40 H 1.08997 * 109.46503 * 65.83652 * 17 16 15 41 41 H 1.09006 * 109.50367 * 60.75766 * 18 17 16 42 42 H 1.08994 * 109.50320 * 180.84005 * 18 17 16 43 43 H 1.09006 * 109.51006 * 297.75188 * 19 18 17 44 44 H 1.09002 * 109.57569 * 177.54402 * 19 18 17 45 45 H 1.09000 * 109.54099 * 59.74248 * 22 20 19 46 46 H 1.08996 * 109.52470 * 303.05216 * 23 22 20 47 47 H 1.09002 * 109.52592 * 63.25328 * 23 22 20 48 48 H 1.09003 * 109.47783 * 297.63014 * 24 23 22 49 49 H 1.08998 * 109.48206 * 177.59221 * 24 23 22 50 50 H 1.08999 * 109.48693 * 301.17340 * 26 25 24 51 51 H 1.09005 * 109.48042 * 181.14103 * 26 25 24 52 52 H 1.08992 * 109.52411 * 182.48256 * 27 26 25 53 53 H 1.08998 * 109.52551 * 62.28898 * 27 26 25 54 54 H 1.08994 * 109.46233 * 54.14392 * 28 16 15 55 55 H 1.09007 * 109.45067 * 294.17282 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0964 -2.2417 6 6 3.1268 2.8777 -1.6726 7 7 3.5550 3.6172 -0.6729 8 14 3.4387 3.4167 -3.4337 9 1 2.3090 4.2600 -3.9006 10 1 4.6992 4.1993 -3.4960 11 1 3.5557 2.2196 -4.3045 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6453 -4.9074 0.0001 17 6 0.8949 -5.0824 -1.2501 18 6 0.0307 -6.3418 -1.1558 19 6 0.9307 -7.5559 -0.9046 20 6 1.7367 -7.3261 0.3769 21 1 1.0561 -7.2368 1.2237 22 6 2.6826 -8.5070 0.6041 23 6 1.8674 -9.7953 0.7521 24 6 2.8158 -10.9578 1.0572 25 8 3.5588 -10.6662 2.2426 26 6 4.3764 -9.4982 2.1461 27 6 3.4908 -8.2771 1.8848 28 6 2.5514 -6.0381 0.2382 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.6085 2.0283 0.5140 33 1 3.1499 1.1384 0.5138 34 1 4.0317 4.4432 -0.8501 35 1 0.7585 -2.5298 -0.8903 36 1 0.7591 -2.5302 0.8897 37 1 3.0064 -3.5774 0.8895 38 1 3.0065 -3.5774 -0.8905 39 1 0.2558 -4.2148 -1.4145 40 1 1.5927 -5.1823 -2.0815 41 1 -0.6767 -6.2371 -0.3331 42 1 -0.5147 -6.4796 -2.0894 43 1 1.6123 -7.6841 -1.7456 44 1 0.3162 -8.4493 -0.7932 45 1 3.3614 -8.5987 -0.2439 46 1 1.1542 -9.6833 1.5687 47 1 1.3318 -9.9962 -0.1757 48 1 3.5028 -11.0951 0.2222 49 1 2.2372 -11.8695 1.2059 50 1 5.0839 -9.6164 1.3254 51 1 4.9222 -9.3584 3.0793 52 1 4.1160 -7.3921 1.7671 53 1 2.8102 -8.1343 2.7242 54 1 3.1155 -5.8647 1.1545 55 1 3.2413 -6.1333 -0.6005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933083711.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:26 Heat of formation + Delta-G solvation = -122.764139 kcal Electronic energy + Delta-G solvation = -30187.008371 eV Core-core repulsion = 26221.867233 eV Total energy + Delta-G solvation = -3965.141138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09380 -40.60459 -39.42811 -36.70271 -36.27512 -34.76259 -34.05857 -32.25977 -31.61447 -30.78509 -29.53778 -27.34051 -26.34586 -25.92251 -24.92258 -24.02617 -23.16512 -22.22614 -20.87069 -20.64737 -19.88024 -18.71838 -18.08306 -17.20290 -17.09400 -16.90762 -16.79670 -16.49949 -16.24784 -15.80324 -15.74659 -15.49227 -15.14324 -14.79579 -14.71517 -14.47870 -14.27380 -14.09193 -13.92510 -13.65715 -13.55144 -13.44623 -13.24336 -13.13621 -12.95496 -12.82046 -12.70240 -12.55854 -12.44263 -12.23213 -12.22039 -12.09575 -11.84046 -11.79605 -11.71767 -11.47020 -11.31351 -11.04985 -10.87233 -10.65903 -10.60819 -10.36013 -9.42797 -9.33746 -8.24029 -6.39145 1.34510 1.37731 1.47941 1.83386 2.26907 2.40679 2.92027 3.01689 3.05148 3.61868 3.69537 3.81647 3.86566 3.96770 4.03691 4.11504 4.11728 4.15270 4.21690 4.33393 4.40084 4.43156 4.45197 4.53965 4.56787 4.60944 4.68695 4.71863 4.74205 4.79822 4.82006 4.84680 4.90838 4.93537 4.96555 4.98816 5.01450 5.03084 5.06932 5.11717 5.17049 5.20007 5.22137 5.23153 5.39028 5.41832 5.54733 5.59569 5.83209 6.04040 6.04759 6.15729 6.29963 6.68032 6.78574 7.26485 7.47683 8.82994 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.001951 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.978977 B =14348.995420 C =14728.740121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.114 4.114 15 C 0.081 3.919 16 N -0.534 5.534 17 C 0.044 3.956 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.066 4.066 21 H 0.075 0.925 22 C -0.079 4.079 23 C -0.144 4.144 24 C 0.054 3.946 25 O -0.407 6.407 26 C 0.058 3.942 27 C -0.152 4.152 28 C 0.059 3.941 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.024 0.976 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.066 0.934 38 H 0.017 0.983 39 H 0.081 0.919 40 H 0.022 0.978 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.054 0.946 49 H 0.103 0.897 50 H 0.054 0.946 51 H 0.097 0.903 52 H 0.074 0.926 53 H 0.067 0.933 54 H 0.072 0.928 55 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 -29.511 1.303 31.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.154 4.154 15 C -0.047 4.047 16 N -0.258 5.258 17 C -0.084 4.084 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.085 4.085 21 H 0.094 0.906 22 C -0.098 4.098 23 C -0.181 4.181 24 C -0.022 4.022 25 O -0.326 6.326 26 C -0.019 4.019 27 C -0.189 4.189 28 C -0.069 4.069 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.042 0.958 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.100 0.900 40 H 0.040 0.960 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.108 0.892 48 H 0.072 0.928 49 H 0.121 0.879 50 H 0.072 0.928 51 H 0.115 0.885 52 H 0.092 0.908 53 H 0.086 0.914 54 H 0.090 0.910 55 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.089 -29.421 1.900 30.852 hybrid contribution 1.361 1.254 -1.519 2.394 sum -7.728 -28.167 0.382 29.210 Atomic orbital electron populations 1.21937 0.77740 1.03999 1.02640 1.48212 1.08514 1.06393 1.71164 1.18755 0.91085 0.80515 0.96032 1.21692 1.36839 1.06553 0.92996 0.92917 1.25902 0.94919 0.96473 1.02119 1.70057 1.38899 1.14793 1.33050 0.85389 0.78140 0.78183 0.78929 1.18646 1.20603 1.19844 1.21393 0.87793 0.86758 0.75787 1.90629 1.16792 1.88294 1.52711 1.21551 0.98828 0.88802 1.06173 1.21589 0.94282 0.88373 1.00498 1.61950 1.27235 1.01084 1.35550 1.22298 0.96788 1.00034 0.89258 1.21575 0.97630 0.92867 1.02752 1.21695 0.98354 0.98532 0.96622 1.21103 0.96457 0.91921 0.98984 0.90616 1.21169 0.96743 0.94533 0.97403 1.22225 0.98505 0.94226 1.03182 1.22751 0.93892 0.98284 0.87282 1.87901 1.60987 1.45503 1.38212 1.22662 0.92276 0.84351 1.02574 1.22271 0.99594 0.98658 0.98402 1.22210 0.93893 0.90603 1.00211 0.91098 0.91614 0.88706 0.95848 0.98560 0.92383 0.87254 0.86202 0.91567 0.96455 0.90048 0.95956 0.90884 0.90175 0.92565 0.89949 0.91270 0.91358 0.89207 0.92776 0.87861 0.92803 0.88452 0.90758 0.91440 0.90973 0.95849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 10.24 127.77 1.31 3.65 16 2 N -0.61 -26.38 2.86 -851.13 -2.43 -28.81 16 3 C 0.26 14.22 5.16 85.63 0.44 14.66 16 4 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.00 0.28 5.46 84.65 0.46 0.74 16 7 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 8 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 12 C 0.49 20.84 7.67 87.66 0.67 21.51 16 13 O -0.60 -31.92 15.56 -3.03 -0.05 -31.97 16 14 C -0.11 -3.20 4.18 29.85 0.12 -3.08 16 15 C 0.08 2.32 4.25 86.30 0.37 2.68 16 16 N -0.53 -11.71 4.66 -896.36 -4.17 -15.88 16 17 C 0.04 0.82 5.29 86.33 0.46 1.28 16 18 C -0.11 -1.51 6.09 30.68 0.19 -1.32 16 19 C -0.11 -1.43 4.88 30.70 0.15 -1.28 16 20 C -0.07 -0.95 1.93 -10.74 -0.02 -0.98 16 21 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 22 C -0.08 -1.02 1.86 -10.67 -0.02 -1.04 16 23 C -0.14 -1.54 4.99 30.69 0.15 -1.39 16 24 C 0.05 0.64 6.84 72.01 0.49 1.14 16 25 O -0.41 -6.99 10.77 -148.98 -1.60 -8.60 16 26 C 0.06 0.82 6.84 72.01 0.49 1.32 16 27 C -0.15 -2.15 4.97 30.69 0.15 -2.00 16 28 C 0.06 1.15 4.37 86.33 0.38 1.52 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 31 H 0.09 2.10 6.44 -2.39 -0.02 2.08 16 32 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 33 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.11 2.59 5.69 -2.39 -0.01 2.58 16 36 H 0.12 2.80 8.11 -2.38 -0.02 2.79 16 37 H 0.07 2.08 7.94 -2.38 -0.02 2.06 16 38 H 0.02 0.57 8.08 -2.38 -0.02 0.55 16 39 H 0.08 1.46 6.21 -2.39 -0.01 1.44 16 40 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.08 0.78 6.67 -2.39 -0.02 0.76 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.09 0.71 6.69 -2.39 -0.02 0.69 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 52 H 0.07 1.08 6.64 -2.39 -0.02 1.07 16 53 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 54 H 0.07 1.47 6.43 -2.39 -0.02 1.45 16 55 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 Total: -1.00 -75.66 415.00 0.93 -74.73 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.83 Total: 13.86 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.04 Total: 5.89 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -6.32 Total: -101.30 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.65 Total: -40.57 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.66 0.93 -74.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933083711.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.034 kcal (2) G-P(sol) polarization free energy of solvation -75.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds