Wall clock time and date at job start Tue Mar 31 2020 22:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99866 * 2 1 4 4 C 1.50700 * 108.87387 * 305.79184 * 3 2 1 5 5 O 1.21279 * 120.00086 * 145.00782 * 4 3 2 6 6 N 1.34775 * 119.99872 * 325.00588 * 4 3 2 7 7 C 1.46507 * 119.99935 * 185.18501 * 6 4 3 8 8 C 1.52998 * 109.46899 * 180.02562 * 7 6 4 9 9 C 1.53075 * 109.45534 * 64.79188 * 8 7 6 10 10 C 1.53189 * 109.29880 * 181.24335 * 9 8 7 11 11 N 1.46928 * 108.88976 * 305.57515 * 10 9 8 12 12 C 1.36933 * 120.63117 * 233.51034 * 11 10 9 13 13 H 1.08000 * 119.99753 * 144.40737 * 12 11 10 14 14 C 1.38815 * 120.00040 * 324.41227 * 12 11 10 15 15 N 1.31614 * 120.00125 * 356.14402 * 14 12 11 16 16 Si 1.86802 * 119.99513 * 176.15191 * 14 12 11 17 17 H 1.48492 * 109.47687 * 59.99903 * 16 14 12 18 18 H 1.48501 * 109.46483 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46918 * 299.99071 * 16 14 12 20 20 C 1.46925 * 118.73719 * 53.53950 * 11 10 9 21 21 C 1.53039 * 109.45838 * 184.99815 * 8 7 6 22 22 C 1.54246 * 108.82251 * 64.35356 * 3 2 1 23 23 C 1.50468 * 108.52401 * 40.71458 * 22 3 2 24 24 C 1.54073 * 112.49737 * 94.15325 * 23 22 3 25 25 C 1.54071 * 112.81403 * 318.28319 * 24 23 22 26 26 C 1.50466 * 112.49594 * 318.28348 * 25 24 23 27 27 C 1.45539 * 108.89628 * 187.18788 * 3 2 1 28 28 H 1.09003 * 109.47336 * 304.60316 * 1 2 3 29 29 H 1.08997 * 109.47291 * 64.59972 * 1 2 3 30 30 H 1.08999 * 109.47441 * 184.60282 * 1 2 3 31 31 H 0.96997 * 120.00130 * 5.19213 * 6 4 3 32 32 H 1.09000 * 109.47213 * 60.00302 * 7 6 4 33 33 H 1.09004 * 109.47078 * 300.00236 * 7 6 4 34 34 H 1.08992 * 109.46315 * 304.97264 * 8 7 6 35 35 H 1.09000 * 109.39072 * 61.36445 * 9 8 7 36 36 H 1.09004 * 109.61804 * 301.25688 * 9 8 7 37 37 H 1.08995 * 109.58917 * 185.71852 * 10 9 8 38 38 H 1.09000 * 109.58466 * 65.42871 * 10 9 8 39 39 H 0.96997 * 119.99801 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.59007 * 66.17534 * 20 11 10 41 41 H 1.09007 * 109.58752 * 186.46126 * 20 11 10 42 42 H 1.09005 * 109.49538 * 58.66249 * 21 8 7 43 43 H 1.08996 * 109.50028 * 298.56493 * 21 8 7 44 44 H 1.09002 * 109.62776 * 160.42809 * 22 3 2 45 45 H 1.08999 * 109.62686 * 281.00738 * 22 3 2 46 46 H 1.09000 * 108.87851 * 333.37701 * 23 22 3 47 47 H 1.08995 * 108.87765 * 214.92871 * 23 22 3 48 48 H 1.09001 * 108.81423 * 197.42049 * 24 23 22 49 49 H 1.09001 * 108.72988 * 79.08365 * 24 23 22 50 50 H 1.09001 * 108.87262 * 197.51059 * 25 24 23 51 51 H 1.08999 * 108.87598 * 79.06394 * 25 24 23 52 52 H 1.09000 * 109.63047 * 334.44692 * 26 25 24 53 53 H 1.09003 * 109.62792 * 213.86593 * 26 25 24 54 54 H 1.09000 * 108.89389 * 62.03102 * 27 3 2 55 55 H 1.09004 * 108.90083 * 180.61718 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4466 2.0900 -1.1567 5 8 1.2533 3.2819 -1.0441 6 7 1.1573 1.4669 -2.3163 7 6 0.7173 2.2459 -3.4764 8 6 0.4562 1.3042 -4.6537 9 6 -0.7138 0.3770 -4.3151 10 6 -0.9521 -0.5847 -5.4834 11 7 -1.1349 0.1974 -6.7137 12 6 -2.2399 0.0116 -7.5008 13 1 -2.6876 0.8522 -8.0100 14 6 -2.7846 -1.2572 -7.6442 15 7 -2.1955 -2.2932 -7.0857 16 14 -4.3535 -1.4940 -8.6300 17 1 -4.1347 -1.0377 -10.0261 18 1 -4.7250 -2.9318 -8.6311 19 1 -5.4484 -0.7009 -8.0158 20 6 -0.1092 1.1822 -7.0837 21 6 0.1175 2.1267 -5.8990 22 6 1.6353 2.0171 1.3161 23 6 1.7313 1.0227 2.4414 24 6 3.1012 1.0597 3.1456 25 6 4.2768 1.1926 2.1587 26 6 4.1033 0.3313 0.9372 27 6 3.4499 1.1804 -0.1723 28 1 -0.3634 0.5836 0.8459 29 1 -0.3634 0.4408 -0.9283 30 1 -0.3634 -1.0243 0.0825 31 1 1.2404 0.5028 -2.3827 32 1 1.4927 2.9620 -3.7486 33 1 -0.1999 2.7802 -3.2286 34 1 1.3471 0.7061 -4.8447 35 1 -1.6106 0.9730 -4.1458 36 1 -0.4804 -0.1934 -3.4161 37 1 -1.8459 -1.1783 -5.2916 38 1 -0.0918 -1.2448 -5.5945 39 1 -2.5759 -3.1797 -7.1862 40 1 0.8212 0.6680 -7.3243 41 1 -0.4459 1.7528 -7.9493 42 1 0.9431 2.8018 -6.1247 43 1 -0.7876 2.7061 -5.7173 44 1 2.3254 2.8414 1.4961 45 1 0.6159 2.3971 1.2494 46 1 1.5668 0.0217 2.0425 47 1 0.9530 1.2412 3.1724 48 1 3.2262 0.1417 3.7198 49 1 3.1197 1.9074 3.8306 50 1 5.1973 0.9038 2.6660 51 1 4.3598 2.2338 1.8472 52 1 3.4612 -0.5167 1.1754 53 1 5.0763 -0.0260 0.5999 54 1 3.6508 0.7152 -1.1373 55 1 3.8946 2.1755 -0.1613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933485958.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:33 Heat of formation + Delta-G solvation = -98.024043 kcal Electronic energy + Delta-G solvation = -31654.373174 eV Core-core repulsion = 27690.304847 eV Total energy + Delta-G solvation = -3964.068327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25491 -39.88022 -39.03478 -37.31605 -36.38422 -34.53111 -33.48311 -32.47764 -32.25006 -31.52915 -28.62851 -27.78932 -26.48787 -25.66881 -25.27770 -23.85225 -22.86441 -22.12802 -21.09083 -20.64479 -20.10642 -18.96369 -18.56422 -17.86482 -17.00060 -16.86553 -16.57847 -16.44435 -15.88167 -15.84893 -15.41418 -15.27710 -15.08765 -14.91539 -14.67577 -14.46001 -14.30871 -13.98097 -13.93635 -13.82866 -13.63549 -13.34966 -13.09357 -13.03785 -12.82883 -12.73962 -12.61688 -12.36586 -12.31077 -12.06330 -11.97272 -11.87197 -11.82957 -11.61637 -11.44560 -11.26162 -11.25878 -11.13898 -11.11075 -11.04984 -10.54143 -10.39190 -10.11348 -8.54459 -7.86810 -5.42471 1.41156 1.46261 1.47636 1.54326 2.01896 2.49732 2.71427 3.28853 3.40977 3.63808 3.72442 3.76337 3.82685 3.93245 4.04690 4.08564 4.18911 4.23497 4.32878 4.35526 4.43728 4.43895 4.50979 4.52087 4.53316 4.66189 4.72572 4.74129 4.74597 4.87990 4.89557 4.92942 4.93996 5.03620 5.06346 5.13288 5.16074 5.22265 5.24594 5.28110 5.32016 5.34186 5.37104 5.39737 5.41860 5.49980 5.56915 5.65029 5.65822 5.81333 5.90713 6.44523 6.45984 7.07574 7.18700 7.87112 8.41130 9.18030 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.002434 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.141459 B =11501.536645 C =12012.396730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.364 6.364 3 C 0.123 3.877 4 C 0.487 3.513 5 O -0.573 6.573 6 N -0.711 5.711 7 C 0.133 3.867 8 C -0.078 4.078 9 C -0.119 4.119 10 C 0.180 3.820 11 N -0.613 5.613 12 C -0.267 4.267 13 H 0.060 0.940 14 C -0.045 4.045 15 N -0.933 5.933 16 Si 0.967 3.033 17 H -0.276 1.276 18 H -0.292 1.292 19 H -0.278 1.278 20 C 0.141 3.859 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.113 4.113 25 C -0.122 4.122 26 C -0.104 4.104 27 C -0.114 4.114 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.109 0.891 31 H 0.412 0.588 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.050 0.950 38 H -0.003 1.003 39 H 0.251 0.749 40 H 0.016 0.984 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.056 0.944 52 H 0.075 0.925 53 H 0.077 0.923 54 H 0.072 0.928 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.653 5.807 20.108 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.283 6.283 3 C 0.081 3.919 4 C 0.273 3.727 5 O -0.452 6.452 6 N -0.364 5.364 7 C 0.010 3.990 8 C -0.097 4.097 9 C -0.159 4.159 10 C 0.055 3.945 11 N -0.337 5.337 12 C -0.398 4.398 13 H 0.078 0.922 14 C -0.240 4.240 15 N -0.579 5.579 16 Si 0.795 3.205 17 H -0.202 1.202 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.016 3.984 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.141 4.141 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.127 0.873 31 H 0.249 0.751 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.016 0.984 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.075 0.925 52 H 0.094 0.906 53 H 0.096 0.904 54 H 0.091 0.909 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.585 6.318 20.140 24.575 hybrid contribution -1.323 -0.495 -0.992 1.726 sum 11.262 5.823 19.148 22.965 Atomic orbital electron populations 1.23105 0.80463 1.04516 1.00744 1.88048 1.20383 1.25532 1.94287 1.20544 0.95769 0.83399 0.92217 1.21897 0.77403 0.88275 0.85092 1.90678 1.54077 1.17003 1.83483 1.46189 1.66949 1.12001 1.11217 1.21357 0.99434 0.93773 0.84450 1.21158 0.98468 0.96206 0.93907 1.22049 0.97422 0.98062 0.98328 1.20549 0.98225 0.91355 0.84395 1.44235 1.21351 1.44550 1.23529 1.19407 1.04731 0.91932 1.23726 0.92209 1.26024 1.02452 0.95379 1.00193 1.70092 1.41207 0.98597 1.47956 0.85356 0.79653 0.76341 0.79139 1.20158 1.21829 1.20376 1.21051 0.90952 0.90634 0.95763 1.21851 1.01323 0.97568 0.94644 1.21632 1.01881 0.99015 0.93125 1.21339 0.98016 1.00346 0.96445 1.21887 0.93308 1.02140 0.97718 1.21394 0.98477 0.99925 0.96130 1.21174 1.00840 0.98344 0.93742 1.20538 0.90745 1.02228 1.01625 0.92858 0.94383 0.87310 0.75071 0.91165 0.92710 0.90718 0.93779 0.91509 0.93130 0.98450 0.94028 0.96641 0.92947 0.89809 0.92784 0.90307 0.92575 0.90175 0.91718 0.91458 0.92109 0.91014 0.92544 0.90648 0.90447 0.90923 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.58 113.37 1.09 1.23 16 2 O -0.36 -7.01 7.03 -148.98 -1.05 -8.06 16 3 C 0.12 2.48 0.56 -13.40 -0.01 2.47 16 4 C 0.49 12.59 5.33 87.66 0.47 13.06 16 5 O -0.57 -18.77 16.16 -3.03 -0.05 -18.81 16 6 N -0.71 -17.46 4.12 -463.05 -1.91 -19.36 16 7 C 0.13 3.58 5.07 86.38 0.44 4.01 16 8 C -0.08 -2.35 2.18 -10.76 -0.02 -2.37 16 9 C -0.12 -4.24 5.25 30.68 0.16 -4.08 16 10 C 0.18 8.50 5.21 86.36 0.45 8.95 16 11 N -0.61 -30.60 2.98 -699.10 -2.08 -32.68 16 12 C -0.27 -14.76 9.55 84.03 0.80 -13.95 16 13 H 0.06 3.24 7.83 -2.91 -0.02 3.21 16 14 C -0.04 -2.49 5.17 84.86 0.44 -2.05 16 15 N -0.93 -54.70 11.00 21.65 0.24 -54.46 16 16 Si 0.97 44.74 29.56 68.60 2.03 46.77 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 C 0.14 5.75 6.52 86.36 0.56 6.32 16 21 C -0.11 -3.65 5.36 30.67 0.16 -3.49 16 22 C -0.12 -2.25 3.52 30.20 0.11 -2.15 16 23 C -0.12 -1.86 4.68 30.14 0.14 -1.72 16 24 C -0.11 -1.40 5.85 31.32 0.18 -1.22 16 25 C -0.12 -1.50 5.31 30.14 0.16 -1.34 16 26 C -0.10 -1.43 5.57 30.19 0.17 -1.26 16 27 C -0.11 -1.97 4.11 28.74 0.12 -1.85 16 28 H 0.05 0.93 6.34 -2.39 -0.02 0.92 16 29 H 0.04 0.82 6.11 -2.39 -0.01 0.81 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.41 9.35 6.57 -92.71 -0.61 8.74 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 2.06 7.15 -2.39 -0.02 2.04 16 37 H 0.05 2.74 6.22 -2.39 -0.01 2.72 16 38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.05 2.11 7.93 -2.38 -0.02 2.09 16 42 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.08 1.53 6.98 -2.39 -0.02 1.52 16 45 H 0.06 1.22 7.20 -2.39 -0.02 1.21 16 46 H 0.08 1.28 5.13 -2.39 -0.01 1.27 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.06 0.75 6.63 -2.39 -0.02 0.73 16 52 H 0.07 1.15 6.24 -2.39 -0.01 1.13 16 53 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.07 1.27 8.10 -2.39 -0.02 1.26 16 55 H 0.08 1.41 7.46 -2.38 -0.02 1.39 16 Total: -1.00 -65.46 399.19 2.85 -62.61 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.25 Total: 23.44 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.42 Total: 0.57 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.75 Total: -106.51 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.10 Total: -26.87 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -65.46 2.85 -62.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933485958.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.415 kcal (2) G-P(sol) polarization free energy of solvation -65.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds