Wall clock time and date at job start Tue Mar 31 2020 22:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 120.00222 * 2 1 4 4 C 1.50703 * 109.47469 * 270.00070 * 3 2 1 5 5 H 1.07998 * 119.99697 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00318 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99736 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00283 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46824 * 90.00372 * 8 6 4 10 10 H 1.48498 * 109.47294 * 210.00554 * 8 6 4 11 11 H 1.48498 * 109.47176 * 330.00740 * 8 6 4 12 12 C 1.34779 * 119.99762 * 180.02562 * 2 1 3 13 13 O 1.21289 * 119.99812 * 179.97438 * 12 2 1 14 14 C 1.50694 * 120.00301 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47445 * 179.97438 * 14 12 2 16 16 N 1.46903 * 109.47218 * 180.90471 * 15 14 12 17 17 C 1.44267 * 111.00043 * 303.09429 * 16 15 14 18 18 C 1.54067 * 111.98767 * 219.30743 * 17 16 15 19 19 C 1.54290 * 112.28839 * 318.92144 * 18 17 16 20 20 C 1.50467 * 113.03124 * 318.29770 * 19 18 17 21 21 C 1.54506 * 108.85245 * 92.15667 * 20 19 18 22 22 H 1.09002 * 109.06059 * 43.34971 * 21 20 19 23 23 C 1.53001 * 109.05786 * 162.26655 * 21 20 19 24 24 H 1.09000 * 110.75381 * 61.37911 * 23 21 20 25 25 C 1.55306 * 110.84930 * 184.86068 * 23 21 20 26 26 C 1.55207 * 100.82807 * 152.17650 * 25 23 21 27 27 O 1.43651 * 105.25735 * 323.81474 * 26 25 23 28 28 C 1.43233 * 109.97214 * 24.28236 * 27 26 25 29 29 C 1.45865 * 111.58857 * 282.80276 * 21 20 19 30 30 H 1.09001 * 109.46966 * 270.00095 * 1 2 3 31 31 H 1.08999 * 109.47064 * 29.99759 * 1 2 3 32 32 H 1.09000 * 109.47354 * 149.99989 * 1 2 3 33 33 H 1.09002 * 109.47087 * 30.00243 * 3 2 1 34 34 H 1.09000 * 109.47289 * 149.99995 * 3 2 1 35 35 H 0.97005 * 119.99530 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.47104 * 59.99935 * 14 12 2 37 37 H 1.09003 * 109.47538 * 300.00454 * 14 12 2 38 38 H 1.08998 * 109.47218 * 300.90627 * 15 14 12 39 39 H 1.09002 * 109.46896 * 60.90729 * 15 14 12 40 40 H 1.09001 * 108.98148 * 339.95611 * 17 16 15 41 41 H 1.09004 * 108.97606 * 98.66187 * 17 16 15 42 42 H 1.08994 * 108.92262 * 198.19271 * 18 17 16 43 43 H 1.09003 * 108.84323 * 79.58958 * 18 17 16 44 44 H 1.08994 * 108.77286 * 197.38064 * 19 18 17 45 45 H 1.09007 * 108.68067 * 79.14664 * 19 18 17 46 46 H 1.09000 * 109.57223 * 332.34467 * 20 19 18 47 47 H 1.09003 * 109.57154 * 211.96467 * 20 19 18 48 48 H 1.09005 * 111.11827 * 270.23560 * 25 23 21 49 49 H 1.08996 * 111.12609 * 34.39884 * 25 23 21 50 50 H 1.08996 * 110.36815 * 204.79610 * 26 25 23 51 51 H 1.09004 * 110.21302 * 82.74560 * 26 25 23 52 52 H 1.08995 * 109.83070 * 238.77270 * 28 27 26 53 53 H 1.09001 * 109.90112 * 117.84887 * 28 27 26 54 54 H 1.08993 * 108.79629 * 300.44389 * 29 21 20 55 55 H 1.09009 * 108.79517 * 182.21209 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6180 -0.6730 8 14 3.4368 3.4176 -3.4338 9 1 2.3064 4.2604 -3.9000 10 1 4.6969 4.2008 -3.4966 11 1 3.5540 2.2207 -4.3050 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0018 16 7 1.6451 -4.9073 -0.0237 17 6 0.7371 -4.9994 1.0936 18 6 0.7002 -6.4188 1.6915 19 6 0.7094 -7.5126 0.6033 20 6 -0.1786 -7.1863 -0.5668 21 6 0.6589 -6.4573 -1.6411 22 1 1.6192 -6.9620 -1.7469 23 6 -0.0837 -6.5151 -2.9776 24 1 -1.0480 -6.0122 -2.9058 25 6 0.7769 -5.9007 -4.1151 26 6 0.2380 -6.6822 -5.3431 27 8 -0.0306 -8.0079 -4.8593 28 6 -0.2593 -7.9758 -3.4457 29 6 0.8908 -5.0619 -1.2853 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 4.0303 4.4439 -0.8503 36 1 0.7584 -2.5298 -0.8903 37 1 0.7590 -2.5303 0.8896 38 1 3.0162 -3.5681 -0.8840 39 1 2.9961 -3.5871 0.8958 40 1 1.0527 -4.2976 1.8657 41 1 -0.2647 -4.7293 0.7594 42 1 -0.2028 -6.5258 2.2925 43 1 1.5701 -6.5527 2.3345 44 1 0.3754 -8.4508 1.0462 45 1 1.7307 -7.6389 0.2439 46 1 -0.9930 -6.5406 -0.2382 47 1 -0.5859 -8.1073 -0.9840 48 1 0.5915 -4.8311 -4.2139 49 1 1.8367 -6.1010 -3.9579 50 1 0.9887 -6.7125 -6.1327 51 1 -0.6785 -6.2207 -5.7106 52 1 0.4633 -8.6158 -2.9396 53 1 -1.2715 -8.3154 -3.2258 54 1 -0.0718 -4.5610 -1.1825 55 1 1.4495 -4.5826 -2.0893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934834043.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:06 Heat of formation + Delta-G solvation = -110.252716 kcal Electronic energy + Delta-G solvation = -30971.848269 eV Core-core repulsion = 27007.249666 eV Total energy + Delta-G solvation = -3964.598602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39876 -40.63472 -39.54279 -36.71746 -36.24201 -34.76809 -34.60212 -31.78787 -31.53899 -29.77074 -29.62839 -27.65695 -27.13670 -25.81101 -25.15438 -23.84523 -23.10318 -21.90886 -21.02872 -20.42878 -19.67248 -18.72366 -18.11655 -17.66225 -17.17376 -17.07981 -16.77959 -16.48279 -16.20499 -16.01851 -15.73842 -15.30535 -15.07945 -14.74904 -14.63348 -14.40938 -14.10075 -13.98359 -13.87067 -13.58159 -13.47043 -13.40470 -13.36865 -13.06347 -13.01047 -12.82888 -12.65522 -12.50628 -12.47289 -12.27505 -12.22691 -12.01631 -11.78340 -11.72721 -11.58447 -11.44938 -11.27182 -11.20585 -10.92676 -10.66376 -10.64463 -10.45600 -9.44106 -9.25593 -8.24583 -6.39857 1.34879 1.38128 1.48294 1.81891 2.29696 2.43658 2.87085 2.98769 3.04963 3.49473 3.70048 3.84712 3.89798 3.90643 3.97991 4.04207 4.12804 4.21313 4.30093 4.31627 4.33346 4.40499 4.41762 4.50685 4.54469 4.60174 4.63663 4.69795 4.78334 4.83574 4.84782 4.88982 4.91414 4.93872 4.96941 4.98458 5.00686 5.03156 5.14095 5.17476 5.20601 5.22828 5.37491 5.39972 5.46234 5.52020 5.53615 5.62915 5.81766 6.03661 6.07434 6.11332 6.27642 6.67323 6.77349 7.26221 7.46978 8.82571 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.002750 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.590812 B =10179.025387 C =11973.317860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.496 3.504 13 O -0.598 6.598 14 C -0.153 4.153 15 C 0.084 3.916 16 N -0.525 5.525 17 C 0.046 3.954 18 C -0.107 4.107 19 C -0.108 4.108 20 C -0.107 4.107 21 C -0.063 4.063 22 H 0.067 0.933 23 C -0.109 4.109 24 H 0.095 0.905 25 C -0.154 4.154 26 C 0.047 3.953 27 O -0.412 6.412 28 C 0.055 3.945 29 C 0.055 3.945 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.022 0.978 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.089 0.911 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.068 0.932 52 H 0.071 0.929 53 H 0.077 0.923 54 H 0.050 0.950 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 -23.992 -0.942 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.284 3.716 13 O -0.480 6.480 14 C -0.195 4.195 15 C -0.045 4.045 16 N -0.247 5.247 17 C -0.083 4.083 18 C -0.145 4.145 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.082 4.082 22 H 0.085 0.915 23 C -0.128 4.128 24 H 0.113 0.887 25 C -0.192 4.192 26 C -0.029 4.029 27 O -0.332 6.332 28 C -0.021 4.021 29 C -0.072 4.072 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.040 0.960 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.108 0.892 49 H 0.091 0.909 50 H 0.105 0.895 51 H 0.086 0.914 52 H 0.089 0.911 53 H 0.095 0.905 54 H 0.068 0.932 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.403 -24.395 -0.962 27.851 hybrid contribution 0.209 1.815 -0.564 1.912 sum -13.194 -22.579 -1.525 26.196 Atomic orbital electron populations 1.21905 0.77949 1.03881 1.02493 1.48234 1.08388 1.06507 1.71246 1.18746 0.91060 0.80531 0.96039 1.21694 1.36915 1.06533 0.92994 0.92856 1.25887 0.94865 0.96437 1.02072 1.70059 1.38929 1.14812 1.33106 0.85400 0.78116 0.78248 0.78967 1.18710 1.20651 1.19679 1.21340 0.87828 0.86561 0.75837 1.90645 1.16663 1.88194 1.52462 1.22351 1.00317 0.91223 1.05567 1.21888 0.94757 0.85159 1.02722 1.61811 1.28345 1.31350 1.03165 1.22054 0.94963 0.97947 0.93289 1.21926 1.01649 0.93394 0.97566 1.21152 0.99974 0.97788 0.95670 1.21417 0.97835 1.00414 0.94799 1.20065 0.98842 0.95960 0.93287 0.91455 1.22739 0.99941 0.95643 0.94509 0.88719 1.23402 1.00381 1.01106 0.94283 1.23516 1.00327 0.82121 0.96962 1.88365 1.92277 1.29327 1.23273 1.23285 1.01526 0.96695 0.80557 1.21126 0.96972 0.97429 0.91685 0.91206 0.91647 0.88935 0.95987 0.98551 0.92372 0.87500 0.86910 0.91917 0.91438 0.92157 0.92739 0.90899 0.92894 0.91984 0.93028 0.91400 0.90880 0.89220 0.90874 0.89508 0.91389 0.91090 0.90464 0.93230 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 10.24 127.77 1.31 3.60 16 2 N -0.61 -25.69 2.86 -851.14 -2.43 -28.12 16 3 C 0.26 14.02 5.16 85.64 0.44 14.46 16 4 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.36 5.46 84.65 0.46 0.83 16 7 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 8 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 9 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.50 20.14 7.67 87.65 0.67 20.81 16 13 O -0.60 -30.85 15.56 -3.06 -0.05 -30.90 16 14 C -0.15 -3.97 3.70 29.85 0.11 -3.86 16 15 C 0.08 2.20 4.34 86.30 0.37 2.58 16 16 N -0.53 -10.43 4.45 -911.80 -4.06 -14.49 16 17 C 0.05 0.75 4.02 87.16 0.35 1.10 16 18 C -0.11 -1.52 6.14 31.39 0.19 -1.33 16 19 C -0.11 -1.45 5.42 30.21 0.16 -1.29 16 20 C -0.11 -1.24 4.89 30.29 0.15 -1.09 16 21 C -0.06 -0.87 1.34 -12.47 -0.02 -0.89 16 22 H 0.07 1.15 7.57 -2.39 -0.02 1.13 16 23 C -0.11 -1.40 2.49 -9.53 -0.02 -1.42 16 24 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 25 C -0.15 -2.25 5.45 32.14 0.18 -2.07 16 26 C 0.05 0.72 7.78 72.74 0.57 1.29 16 27 O -0.41 -8.10 11.36 -148.98 -1.69 -9.79 16 28 C 0.06 0.80 6.17 72.45 0.45 1.25 16 29 C 0.05 0.91 3.09 83.94 0.26 1.17 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 32 H 0.09 1.95 6.44 -2.39 -0.02 1.93 16 33 H 0.02 1.21 8.07 -2.39 -0.02 1.20 16 34 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 35 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 36 H 0.11 2.34 6.35 -2.39 -0.02 2.32 16 37 H 0.11 2.34 6.70 -2.39 -0.02 2.32 16 38 H 0.06 1.92 7.85 -2.39 -0.02 1.91 16 39 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 40 H 0.06 1.07 6.85 -2.39 -0.02 1.05 16 41 H 0.05 0.75 6.51 -2.38 -0.02 0.73 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 0.87 7.38 -2.38 -0.02 0.85 16 46 H 0.07 0.74 7.15 -2.39 -0.02 0.72 16 47 H 0.07 0.71 6.82 -2.39 -0.02 0.70 16 48 H 0.09 1.23 8.07 -2.38 -0.02 1.21 16 49 H 0.07 1.20 8.04 -2.39 -0.02 1.18 16 50 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 52 H 0.07 1.01 7.68 -2.39 -0.02 0.99 16 53 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.05 0.72 6.87 -2.39 -0.02 0.70 16 55 H 0.06 1.16 6.52 -2.38 -0.02 1.15 16 Total: -1.00 -74.61 410.86 0.80 -73.82 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.84 Total: 14.91 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 5.87 Total: 3.97 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -6.20 Total: -98.89 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -1.74 Total: -40.69 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -74.61 0.80 -73.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934834043.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.437 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds