Wall clock time and date at job start Tue Mar 31 2020 22:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46491 * 119.99814 * 2 1 4 4 C 1.50697 * 109.47698 * 270.00583 * 3 2 1 5 5 H 1.07996 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00399 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99832 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00252 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47275 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47118 * 119.99852 * 8 6 4 11 11 H 1.48500 * 109.47261 * 240.00140 * 8 6 4 12 12 C 1.34776 * 119.99954 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00043 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00049 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.47081 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.46895 * 179.97438 * 15 14 12 17 17 C 1.47942 * 111.00380 * 297.40884 * 16 15 14 18 18 C 1.54050 * 113.41909 * 192.12283 * 17 16 15 19 19 C 1.50546 * 112.86231 * 317.93237 * 18 17 16 20 20 C 1.54522 * 108.96075 * 91.61615 * 19 18 17 21 21 C 1.45875 * 111.66927 * 282.70558 * 20 19 18 22 22 H 1.09000 * 108.84979 * 300.67561 * 21 20 19 23 23 C 1.53006 * 108.84177 * 182.32123 * 21 20 19 24 24 H 1.09007 * 110.75064 * 302.02284 * 23 21 20 25 25 C 1.55306 * 110.84731 * 65.71595 * 23 21 20 26 26 C 1.54947 * 100.94290 * 152.32335 * 25 23 21 27 27 O 1.43643 * 105.13590 * 323.55756 * 26 25 23 28 28 C 1.43246 * 109.97014 * 24.42592 * 27 26 25 29 29 C 1.44298 * 110.99869 * 169.99814 * 16 15 14 30 30 H 1.09009 * 109.46532 * 269.99266 * 1 2 3 31 31 H 1.08997 * 109.47649 * 29.99055 * 1 2 3 32 32 H 1.09000 * 109.47409 * 149.99762 * 1 2 3 33 33 H 1.09004 * 109.47394 * 30.01134 * 3 2 1 34 34 H 1.09009 * 109.47015 * 150.00499 * 3 2 1 35 35 H 0.96998 * 119.99981 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.47047 * 60.00433 * 14 12 2 37 37 H 1.09000 * 109.47466 * 300.00857 * 14 12 2 38 38 H 1.09004 * 109.46761 * 60.00206 * 15 14 12 39 39 H 1.08995 * 109.47240 * 300.00053 * 15 14 12 40 40 H 1.08994 * 108.70625 * 313.18406 * 17 16 15 41 41 H 1.08998 * 108.71076 * 71.31921 * 17 16 15 42 42 H 1.08998 * 108.98572 * 196.95582 * 18 17 16 43 43 H 1.08998 * 108.67500 * 78.69053 * 18 17 16 44 44 H 1.09002 * 109.57458 * 331.73897 * 19 18 17 45 45 H 1.08998 * 109.57029 * 211.49016 * 19 18 17 46 46 H 1.08996 * 109.04214 * 43.27595 * 20 19 18 47 47 H 1.09000 * 109.03743 * 162.14473 * 20 19 18 48 48 H 1.09003 * 111.12204 * 270.24341 * 25 23 21 49 49 H 1.09001 * 111.12182 * 34.40671 * 25 23 21 50 50 H 1.08991 * 110.31056 * 204.64023 * 26 25 23 51 51 H 1.09006 * 110.39081 * 82.51135 * 26 25 23 52 52 H 1.08999 * 109.82743 * 238.77018 * 28 27 26 53 53 H 1.09001 * 109.90382 * 117.84833 * 28 27 26 54 54 H 1.09003 * 109.70029 * 101.64208 * 29 16 15 55 55 H 1.09005 * 109.72815 * 341.07730 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7039 -1.4207 5 1 2.0973 1.0965 -2.2417 6 6 3.1267 2.8776 -1.6726 7 7 3.5549 3.6172 -0.6730 8 14 3.4373 3.4174 -3.4337 9 1 2.8594 2.4175 -4.3673 10 1 2.8002 4.7385 -3.6662 11 1 4.8998 3.5251 -3.6679 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 7 1.6451 -4.9074 0.0001 17 6 0.8298 -5.0484 1.2265 18 6 0.2728 -6.4700 1.4314 19 6 -0.2435 -7.0851 0.1580 20 6 0.8978 -7.8815 -0.5135 21 6 1.8407 -7.0012 -1.1945 22 1 1.3052 -6.4316 -1.9541 23 6 2.9066 -7.8565 -1.8826 24 1 3.4212 -8.4885 -1.1587 25 6 2.2818 -8.7082 -3.0211 26 6 3.4975 -8.8710 -3.9678 27 8 4.2016 -7.6213 -3.8924 28 6 3.9110 -6.9702 -2.6500 29 6 2.5354 -6.0187 -0.2339 30 1 -0.3633 -0.0001 1.0278 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6084 2.0283 0.5140 34 1 3.1500 1.1383 0.5138 35 1 4.0324 4.4427 -0.8501 36 1 0.7585 -2.5299 -0.8903 37 1 0.7589 -2.5303 0.8896 38 1 3.0063 -3.5775 0.8895 39 1 3.0063 -3.5775 -0.8905 40 1 1.4449 -4.7862 2.0872 41 1 -0.0078 -4.3530 1.1714 42 1 -0.5396 -6.4313 2.1571 43 1 1.0666 -7.1018 1.8297 44 1 -0.5852 -6.2987 -0.5150 45 1 -1.0718 -7.7558 0.3862 46 1 1.4297 -8.4514 0.2482 47 1 0.4696 -8.5733 -1.2389 48 1 1.9423 -9.6744 -2.6477 49 1 1.4701 -8.1719 -3.5126 50 1 3.1606 -9.0545 -4.9880 51 1 4.1365 -9.6864 -3.6286 52 1 3.4708 -5.9913 -2.8397 53 1 4.8253 -6.8576 -2.0673 54 1 2.7536 -6.5195 0.7094 55 1 3.4620 -5.6598 -0.6820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934834044.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:10 Heat of formation + Delta-G solvation = -111.838071 kcal Electronic energy + Delta-G solvation = -30714.264155 eV Core-core repulsion = 26749.596806 eV Total energy + Delta-G solvation = -3964.667348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24405 -40.64072 -39.45529 -36.73423 -36.30387 -34.75157 -34.48040 -32.21176 -31.46988 -29.90383 -29.59528 -27.40496 -26.76130 -26.36599 -25.01903 -23.46242 -23.02047 -22.05660 -20.97990 -20.43962 -19.84950 -18.71535 -18.04296 -17.58182 -17.16611 -17.09857 -16.99867 -16.58083 -16.16191 -15.86637 -15.74190 -15.48605 -14.88634 -14.68382 -14.57499 -14.40164 -14.17814 -13.95394 -13.87370 -13.72211 -13.61699 -13.45073 -13.19956 -13.06925 -12.96823 -12.77475 -12.62430 -12.44372 -12.41867 -12.26383 -12.22287 -11.97713 -11.77900 -11.68445 -11.67975 -11.40496 -11.35822 -11.17424 -11.02354 -10.66409 -10.59603 -10.48954 -9.42012 -9.15261 -8.23995 -6.38904 1.35069 1.37803 1.49705 1.84318 2.28564 2.41512 2.88946 3.01169 3.05506 3.47832 3.68597 3.84118 3.89099 3.97252 4.02340 4.05165 4.10839 4.19944 4.28357 4.30709 4.32800 4.41271 4.43928 4.57220 4.62249 4.66622 4.70820 4.72283 4.81712 4.82252 4.84370 4.86946 4.89749 4.95788 4.96373 4.99314 5.02213 5.04750 5.07953 5.19047 5.21763 5.23015 5.30192 5.41272 5.51276 5.52276 5.55549 5.65820 5.83700 6.05013 6.07190 6.09829 6.33846 6.68818 6.79455 7.27153 7.48642 8.83316 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.002593 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.185973 B =10796.746535 C =12528.804862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.114 4.114 15 C 0.087 3.913 16 N -0.542 5.542 17 C 0.053 3.947 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.108 4.108 21 C -0.057 4.057 22 H 0.069 0.931 23 C -0.112 4.112 24 H 0.093 0.907 25 C -0.141 4.141 26 C 0.040 3.960 27 O -0.417 6.417 28 C 0.049 3.951 29 C 0.063 3.937 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.024 0.976 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.022 0.978 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.105 0.895 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.068 0.932 52 H 0.059 0.941 53 H 0.062 0.938 54 H 0.048 0.952 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 -29.347 1.416 31.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.154 4.154 15 C -0.042 4.042 16 N -0.267 5.267 17 C -0.073 4.073 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.145 4.145 21 C -0.076 4.076 22 H 0.087 0.913 23 C -0.131 4.131 24 H 0.111 0.889 25 C -0.178 4.178 26 C -0.036 4.036 27 O -0.337 6.337 28 C -0.028 4.028 29 C -0.065 4.065 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.042 0.958 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.040 0.960 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.124 0.876 49 H 0.097 0.903 50 H 0.109 0.891 51 H 0.087 0.913 52 H 0.077 0.923 53 H 0.080 0.920 54 H 0.066 0.934 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.027 -29.085 0.956 31.119 hybrid contribution 1.315 1.083 0.154 1.710 sum -9.712 -28.002 1.110 29.659 Atomic orbital electron populations 1.21940 0.77751 1.04049 1.02594 1.48211 1.08513 1.06400 1.71194 1.18749 0.91062 0.80558 0.96009 1.21733 1.36718 1.06511 0.93043 0.92925 1.25881 0.94898 0.96440 1.02056 1.70058 1.38970 1.14893 1.33006 0.85356 0.77886 0.78456 0.79046 1.19128 1.19223 1.20776 1.21430 0.87804 0.86794 0.75752 1.90630 1.16821 1.88299 1.52699 1.21565 0.98884 0.88845 1.06114 1.21659 0.93995 0.88180 1.00324 1.60671 1.26466 1.01079 1.38435 1.22591 0.96978 0.98840 0.88939 1.21394 1.00738 0.94275 0.98803 1.21259 0.97561 0.99375 0.96473 1.20596 0.96183 0.97696 1.00030 1.19960 0.95166 0.95070 0.97420 0.91254 1.22812 0.95960 0.96718 0.97564 0.88886 1.23305 0.97705 1.01626 0.95178 1.23594 0.92765 0.85953 1.01238 1.88389 1.70977 1.35529 1.38811 1.23300 0.98488 0.96356 0.84612 1.21920 0.94297 0.91538 0.98769 0.91064 0.91687 0.88656 0.95843 0.98608 0.92380 0.86764 0.86797 0.96012 0.92165 0.95740 0.90072 0.90200 0.92470 0.91769 0.90985 0.91991 0.90876 0.87648 0.90307 0.89125 0.91345 0.92304 0.91994 0.93353 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 10.24 127.77 1.31 3.65 16 2 N -0.61 -26.48 2.86 -851.13 -2.43 -28.92 16 3 C 0.26 14.29 5.16 85.63 0.44 14.74 16 4 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.35 5.46 84.65 0.46 0.82 16 7 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 8 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 C 0.49 20.84 7.67 87.66 0.67 21.52 16 13 O -0.60 -32.04 15.56 -3.02 -0.05 -32.09 16 14 C -0.11 -3.19 4.09 29.85 0.12 -3.06 16 15 C 0.09 2.43 4.09 86.30 0.35 2.79 16 16 N -0.54 -11.21 4.02 -896.00 -3.60 -14.82 16 17 C 0.05 0.90 4.78 86.46 0.41 1.31 16 18 C -0.11 -1.40 5.29 30.15 0.16 -1.24 16 19 C -0.11 -1.24 5.62 30.32 0.17 -1.07 16 20 C -0.11 -1.18 4.47 28.93 0.13 -1.05 16 21 C -0.06 -0.84 1.26 -12.65 -0.02 -0.85 16 22 H 0.07 1.26 8.01 -2.39 -0.02 1.24 16 23 C -0.11 -1.57 2.50 -9.53 -0.02 -1.59 16 24 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 25 C -0.14 -1.61 5.56 32.05 0.18 -1.43 16 26 C 0.04 0.60 7.78 72.65 0.56 1.17 16 27 O -0.42 -9.83 11.36 -148.98 -1.69 -11.53 16 28 C 0.05 1.00 6.04 72.45 0.44 1.44 16 29 C 0.06 1.18 4.67 87.12 0.41 1.59 16 30 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 32 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 33 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 34 H 0.00 -0.27 7.42 -2.38 -0.02 -0.29 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.11 2.81 7.40 -2.39 -0.02 2.79 16 37 H 0.11 2.51 6.68 -2.39 -0.02 2.50 16 38 H 0.02 0.68 8.00 -2.38 -0.02 0.66 16 39 H 0.06 1.96 7.75 -2.39 -0.02 1.94 16 40 H 0.02 0.46 7.95 -2.39 -0.02 0.44 16 41 H 0.08 1.25 6.97 -2.39 -0.02 1.24 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.71 6.67 -2.39 -0.02 0.69 16 44 H 0.06 0.91 7.79 -2.39 -0.02 0.89 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.06 0.63 7.59 -2.39 -0.02 0.61 16 47 H 0.07 0.65 7.10 -2.39 -0.02 0.63 16 48 H 0.11 0.72 8.07 -2.39 -0.02 0.70 16 49 H 0.08 0.96 7.99 -2.39 -0.02 0.94 16 50 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 52 H 0.06 1.38 7.53 -2.39 -0.02 1.36 16 53 H 0.06 1.27 8.10 -2.39 -0.02 1.26 16 54 H 0.05 0.85 6.80 -2.39 -0.02 0.83 16 55 H 0.06 1.24 5.72 -2.38 -0.01 1.23 16 Total: -1.00 -77.22 413.10 1.40 -75.82 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.84 Total: 13.68 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.02 Total: 6.94 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -5.75 Total: -100.76 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -1.74 Total: -43.61 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -77.22 1.40 -75.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934834044.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.014 kcal (2) G-P(sol) polarization free energy of solvation -77.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds