Wall clock time and date at job start Tue Mar 31 2020 22:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99896 * 2 1 4 4 C 1.50699 * 109.47398 * 270.00022 * 3 2 1 5 5 H 1.08003 * 120.00015 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00048 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00473 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99797 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47130 * 59.99997 * 8 6 4 10 10 H 1.48503 * 109.47071 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47482 * 299.99734 * 8 6 4 12 12 C 1.34777 * 119.99832 * 180.02562 * 2 1 3 13 13 O 1.21278 * 119.99854 * 180.02562 * 12 2 1 14 14 C 1.50703 * 120.00161 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46912 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.46769 * 180.02562 * 15 14 12 17 17 C 1.39779 * 111.00126 * 66.04388 * 16 15 14 18 18 C 1.54437 * 111.76762 * 189.12397 * 17 16 15 19 19 C 1.50751 * 109.02591 * 282.58969 * 18 17 16 20 20 C 1.54175 * 112.60737 * 93.02059 * 19 18 17 21 21 C 1.53817 * 111.97157 * 318.48599 * 20 19 18 22 22 H 1.08997 * 109.05110 * 79.59181 * 21 20 19 23 23 C 1.52998 * 109.05053 * 198.56743 * 21 20 19 24 24 H 1.09001 * 110.43790 * 60.69835 * 23 21 20 25 25 C 1.54814 * 110.48366 * 298.15107 * 23 21 20 26 26 C 1.55224 * 101.98490 * 220.51979 * 25 23 21 27 27 O 1.44379 * 103.56786 * 36.88589 * 26 25 23 28 28 C 1.43750 * 106.97207 * 320.00810 * 27 26 25 29 29 C 1.47638 * 110.99605 * 194.93457 * 16 15 14 30 30 H 1.08999 * 109.47333 * 269.99341 * 1 2 3 31 31 H 1.08997 * 109.47024 * 30.00155 * 1 2 3 32 32 H 1.09000 * 109.46875 * 149.99915 * 1 2 3 33 33 H 1.09000 * 109.47082 * 30.00019 * 3 2 1 34 34 H 1.09004 * 109.46754 * 150.00286 * 3 2 1 35 35 H 0.96999 * 120.00725 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47152 * 60.00245 * 14 12 2 37 37 H 1.09001 * 109.46980 * 300.00345 * 14 12 2 38 38 H 1.09001 * 109.47194 * 299.99742 * 15 14 12 39 39 H 1.08992 * 109.47399 * 59.99914 * 15 14 12 40 40 H 1.08995 * 109.02358 * 309.71468 * 17 16 15 41 41 H 1.09004 * 109.01986 * 68.61660 * 17 16 15 42 42 H 1.09002 * 109.54171 * 42.45647 * 18 17 16 43 43 H 1.08995 * 109.54084 * 162.63456 * 18 17 16 44 44 H 1.08997 * 108.85419 * 213.82311 * 19 18 17 45 45 H 1.08998 * 108.86001 * 332.31756 * 19 18 17 46 46 H 1.09005 * 108.98198 * 79.13151 * 20 19 18 47 47 H 1.09002 * 108.97907 * 197.92322 * 20 19 18 48 48 H 1.08996 * 110.91142 * 338.64440 * 25 23 21 49 49 H 1.09003 * 110.90609 * 102.25021 * 25 23 21 50 50 H 1.09008 * 110.52191 * 278.38485 * 26 25 23 51 51 H 1.09001 * 110.77728 * 155.50368 * 26 25 23 52 52 H 1.09002 * 109.87914 * 267.08843 * 28 27 26 53 53 H 1.09000 * 110.00109 * 146.00880 * 28 27 26 54 54 H 1.09002 * 109.74587 * 269.98049 * 29 16 15 55 55 H 1.08996 * 109.74707 * 30.70893 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5551 3.6171 -0.6731 8 14 3.4376 3.4171 -3.4338 9 1 2.1398 3.5955 -4.1331 10 1 4.1813 4.7025 -3.4338 11 1 4.2393 2.3821 -4.1346 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6352 -0.0005 16 7 1.6451 -4.9074 -0.0011 17 6 0.9362 -5.0760 -1.1940 18 6 -0.0171 -6.2892 -1.1271 19 6 0.7845 -7.5541 -1.3003 20 6 1.2272 -8.1641 0.0447 21 6 1.7012 -7.0880 1.0364 22 1 0.8308 -6.6157 1.4917 23 6 2.5388 -7.7519 2.1311 24 1 3.4141 -8.2371 1.6990 25 6 1.6861 -8.7752 2.9201 26 6 2.1556 -8.5291 4.3790 27 8 2.3576 -7.1005 4.4334 28 6 2.9640 -6.7148 3.1885 29 6 2.5339 -6.0316 0.3541 30 1 -0.3634 -0.0001 1.0276 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6084 2.0283 0.5138 34 1 3.1500 1.1383 0.5138 35 1 4.0326 4.4426 -0.8503 36 1 0.7584 -2.5299 -0.8903 37 1 0.7590 -2.5302 0.8897 38 1 3.0063 -3.5775 -0.8905 39 1 3.0063 -3.5775 0.8894 40 1 0.3530 -4.1764 -1.3908 41 1 1.6437 -5.2260 -2.0095 42 1 -0.5194 -6.3053 -0.1599 43 1 -0.7589 -6.2142 -1.9221 44 1 0.1783 -8.2847 -1.8358 45 1 1.6716 -7.3308 -1.8930 46 1 0.3878 -8.7045 0.4823 47 1 2.0438 -8.8634 -0.1349 48 1 0.6229 -8.5608 2.8124 49 1 1.9100 -9.7940 2.6039 50 1 3.0894 -9.0565 4.5741 51 1 1.3875 -8.8354 5.0892 52 1 4.0493 -6.7124 3.2900 53 1 2.6171 -5.7237 2.8961 54 1 2.9846 -6.4441 -0.5486 55 1 3.3146 -5.6842 1.0307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934834045.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:14 Heat of formation + Delta-G solvation = -107.885577 kcal Electronic energy + Delta-G solvation = -30742.137342 eV Core-core repulsion = 26777.641387 eV Total energy + Delta-G solvation = -3964.495955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32378 -40.61833 -39.60432 -36.70040 -36.25567 -34.75006 -34.43030 -32.20319 -31.44523 -29.81474 -29.52210 -27.41349 -26.79259 -26.39912 -25.07679 -23.65322 -22.98962 -21.78247 -21.51697 -20.14552 -19.77187 -18.71237 -18.14406 -17.43075 -17.20726 -17.08015 -16.79785 -16.33859 -16.30327 -15.99422 -15.82907 -15.62393 -15.33852 -14.71806 -14.61540 -14.21062 -14.13090 -13.88736 -13.75918 -13.70293 -13.45400 -13.37488 -13.26507 -13.06726 -12.95251 -12.77254 -12.63709 -12.54535 -12.40874 -12.25540 -12.20270 -11.97531 -11.81466 -11.73230 -11.60983 -11.39964 -11.37600 -11.06978 -11.04321 -10.65640 -10.59211 -10.55356 -9.41956 -9.18617 -8.23385 -6.38741 1.34938 1.39465 1.46853 1.84445 2.27613 2.41498 2.94753 3.05749 3.09346 3.56103 3.72073 3.79590 3.90411 3.94125 3.99185 4.06139 4.13726 4.18391 4.31792 4.34458 4.38180 4.40736 4.44731 4.54075 4.62728 4.64144 4.67307 4.73131 4.78592 4.81660 4.87266 4.89093 4.90381 4.96224 4.97063 4.97691 5.02586 5.04492 5.07420 5.15572 5.21172 5.22930 5.29071 5.31982 5.38208 5.51731 5.55010 5.63133 5.83720 6.00295 6.04984 6.10881 6.50027 6.68341 6.79332 7.26981 7.48530 8.83556 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016529 B = 0.002314 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.602426 B =12096.541408 C =12943.683264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.116 4.116 15 C 0.086 3.914 16 N -0.546 5.546 17 C 0.063 3.937 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.064 4.064 22 H 0.077 0.923 23 C -0.112 4.112 24 H 0.091 0.909 25 C -0.139 4.139 26 C 0.036 3.964 27 O -0.408 6.408 28 C 0.043 3.957 29 C 0.065 3.935 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.023 0.977 34 H -0.004 1.004 35 H 0.268 0.732 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.018 0.982 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.008 0.992 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.100 0.900 52 H 0.055 0.945 53 H 0.077 0.923 54 H 0.042 0.958 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 -29.700 3.099 31.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.156 4.156 15 C -0.042 4.042 16 N -0.270 5.270 17 C -0.067 4.067 18 C -0.148 4.148 19 C -0.159 4.159 20 C -0.143 4.143 21 C -0.083 4.083 22 H 0.096 0.904 23 C -0.131 4.131 24 H 0.109 0.891 25 C -0.177 4.177 26 C -0.040 4.040 27 O -0.328 6.328 28 C -0.033 4.033 29 C -0.061 4.061 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.041 0.959 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.037 0.963 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.026 0.974 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.117 0.883 50 H 0.084 0.916 51 H 0.118 0.882 52 H 0.074 0.926 53 H 0.096 0.904 54 H 0.060 0.940 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.041 -29.365 3.644 31.248 hybrid contribution 1.419 0.955 -1.457 2.247 sum -8.622 -28.411 2.187 29.770 Atomic orbital electron populations 1.21930 0.77783 1.03983 1.02598 1.48209 1.08487 1.06412 1.71194 1.18749 0.91064 0.80526 0.96034 1.21664 1.36921 1.06582 0.92981 0.92897 1.25892 0.94896 0.96424 1.02106 1.70045 1.38818 1.14851 1.33157 0.85458 0.78896 0.77354 0.79039 1.18312 1.20261 1.20378 1.21393 0.87792 0.86741 0.75765 1.90628 1.16771 1.88288 1.52697 1.21606 0.98937 0.88950 1.06107 1.21607 0.94087 0.87967 1.00564 1.58844 1.29787 1.01780 1.36565 1.21172 0.96203 1.00172 0.89126 1.21435 0.97353 0.92912 1.03080 1.21423 0.99570 0.97401 0.97469 1.21930 1.01177 0.96964 0.94203 1.20967 0.97980 0.94541 0.94815 0.90433 1.22621 0.99287 0.95690 0.95466 0.89101 1.23206 1.00594 1.00082 0.93810 1.23810 1.01141 0.80981 0.98071 1.88866 1.82417 1.24100 1.37386 1.23384 0.97178 0.99292 0.83487 1.21996 0.94180 0.90652 0.99314 0.91166 0.91632 0.88706 0.95896 0.98588 0.92361 0.87240 0.86316 0.96343 0.91499 0.90649 0.97386 0.90687 0.90439 0.91079 0.93518 0.90968 0.91615 0.90211 0.88301 0.91616 0.88166 0.92631 0.90446 0.93998 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.39 10.24 127.77 1.31 3.70 16 2 N -0.61 -26.62 2.86 -851.13 -2.43 -29.05 16 3 C 0.26 14.33 5.16 85.63 0.44 14.77 16 4 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.34 5.46 84.65 0.46 0.80 16 7 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 8 Si 0.97 45.51 29.54 68.60 2.03 47.53 16 9 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 C 0.49 20.98 7.67 87.66 0.67 21.65 16 13 O -0.60 -32.01 15.56 -3.02 -0.05 -32.06 16 14 C -0.12 -3.29 4.16 29.85 0.12 -3.17 16 15 C 0.09 2.42 4.24 86.30 0.37 2.79 16 16 N -0.55 -11.64 3.95 -913.19 -3.61 -15.25 16 17 C 0.06 1.19 4.82 88.07 0.42 1.62 16 18 C -0.11 -1.55 5.65 30.35 0.17 -1.37 16 19 C -0.12 -1.52 5.32 30.26 0.16 -1.35 16 20 C -0.11 -1.16 4.78 31.27 0.15 -1.01 16 21 C -0.06 -0.92 1.10 -11.23 -0.01 -0.93 16 22 H 0.08 1.34 7.26 -2.39 -0.02 1.33 16 23 C -0.11 -1.48 2.45 -9.80 -0.02 -1.50 16 24 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 25 C -0.14 -1.46 6.00 31.98 0.19 -1.27 16 26 C 0.04 0.49 7.72 72.75 0.56 1.05 16 27 O -0.41 -8.94 11.52 -148.98 -1.72 -10.66 16 28 C 0.04 0.81 6.44 72.35 0.47 1.28 16 29 C 0.07 1.22 4.49 85.45 0.38 1.60 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 32 H 0.09 2.14 6.44 -2.39 -0.02 2.13 16 33 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 34 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.11 2.63 5.60 -2.39 -0.01 2.61 16 37 H 0.12 2.83 8.11 -2.39 -0.02 2.81 16 38 H 0.02 0.60 8.06 -2.39 -0.02 0.58 16 39 H 0.07 2.07 7.62 -2.39 -0.02 2.06 16 40 H 0.08 1.42 5.89 -2.39 -0.01 1.40 16 41 H 0.01 0.17 7.54 -2.39 -0.02 0.16 16 42 H 0.07 1.09 7.11 -2.39 -0.02 1.07 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 0.70 6.57 -2.39 -0.02 0.68 16 46 H 0.07 0.67 7.81 -2.38 -0.02 0.65 16 47 H 0.07 0.65 7.97 -2.39 -0.02 0.63 16 48 H 0.08 0.86 7.72 -2.39 -0.02 0.84 16 49 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 51 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.08 1.67 6.76 -2.39 -0.02 1.66 16 54 H 0.04 0.80 6.66 -2.39 -0.02 0.78 16 55 H 0.07 1.39 5.65 -2.39 -0.01 1.38 16 Total: -1.00 -76.45 410.69 1.44 -75.01 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.85 Total: 14.54 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.09 Total: 6.92 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -5.76 Total: -101.28 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -1.76 Total: -42.71 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -76.45 1.44 -75.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934834045.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.876 kcal (2) G-P(sol) polarization free energy of solvation -76.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds