Wall clock time and date at job start Tue Mar 31 2020 22:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99809 * 2 1 4 4 C 1.53001 * 109.46721 * 210.00109 * 3 2 1 5 5 C 1.52998 * 109.47065 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47442 * 59.99353 * 5 4 3 7 7 C 1.50703 * 109.46966 * 60.00487 * 6 5 4 8 8 O 1.21282 * 119.99881 * 353.40495 * 7 6 5 9 9 N 1.34774 * 119.99890 * 173.41259 * 7 6 5 10 10 C 1.46501 * 119.99629 * 174.79503 * 9 7 6 11 11 C 1.46501 * 120.00014 * 354.79182 * 9 7 6 12 12 H 1.08996 * 108.31663 * 7.62813 * 11 9 7 13 13 C 1.52565 * 108.51116 * 250.00902 * 11 9 7 14 14 C 1.50889 * 109.35635 * 153.73452 * 13 11 9 15 15 C 1.53949 * 110.09247 * 91.88658 * 14 13 11 16 16 N 1.47608 * 112.14279 * 319.43640 * 15 14 13 17 17 C 1.36937 * 118.64023 * 137.89100 * 16 15 14 18 18 H 1.07997 * 119.99613 * 210.07533 * 17 16 15 19 19 C 1.38808 * 120.00242 * 30.07723 * 17 16 15 20 20 N 1.31616 * 120.00188 * 10.78846 * 19 17 16 21 21 Si 1.86805 * 120.00088 * 190.78501 * 19 17 16 22 22 H 1.48494 * 109.46815 * 60.00199 * 21 19 17 23 23 H 1.48494 * 109.47115 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46947 * 300.00156 * 21 19 17 25 25 C 1.44578 * 122.70981 * 317.86731 * 16 15 14 26 26 C 1.47095 * 108.51120 * 125.24797 * 11 9 7 27 27 C 1.53003 * 109.47156 * 300.00414 * 6 5 4 28 28 C 1.52998 * 109.47038 * 59.99986 * 27 6 5 29 29 H 1.09002 * 109.47454 * 60.00192 * 1 2 3 30 30 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47194 * 300.00722 * 1 2 3 32 32 H 1.09000 * 109.46782 * 329.99584 * 3 2 1 33 33 H 1.08993 * 109.47375 * 59.99540 * 4 3 2 34 34 H 1.09010 * 109.46602 * 299.99538 * 4 3 2 35 35 H 1.09000 * 109.46551 * 299.99544 * 5 4 3 36 36 H 1.09005 * 109.47366 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47481 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.47144 * 274.14075 * 10 9 7 39 39 H 1.08992 * 109.47341 * 34.14578 * 10 9 7 40 40 H 1.09005 * 109.46944 * 154.14446 * 10 9 7 41 41 H 1.09000 * 109.49187 * 273.70043 * 13 11 9 42 42 H 1.09002 * 109.49290 * 33.77086 * 13 11 9 43 43 H 1.09001 * 109.36484 * 331.69911 * 14 13 11 44 44 H 1.08998 * 109.26131 * 212.01483 * 14 13 11 45 45 H 1.09000 * 108.94315 * 198.74869 * 15 14 13 46 46 H 1.08997 * 108.94911 * 80.12216 * 15 14 13 47 47 H 0.97000 * 120.00659 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.45426 * 330.68498 * 25 16 15 49 49 H 1.09003 * 109.42114 * 210.75353 * 25 16 15 50 50 H 1.09008 * 109.32713 * 304.31462 * 26 11 9 51 51 H 1.08997 * 109.33474 * 63.96661 * 26 11 9 52 52 H 1.09002 * 109.46732 * 179.97438 * 27 6 5 53 53 H 1.09001 * 109.46688 * 300.00049 * 27 6 5 54 54 H 1.08996 * 109.47010 * 180.02562 * 28 27 6 55 55 H 1.08996 * 109.47509 * 59.99761 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3588 1.2633 -0.7213 5 6 3.9814 2.6608 -0.7208 6 6 4.1889 3.1263 0.7219 7 6 5.1085 2.1665 1.4320 8 8 5.4584 1.1433 0.8829 9 7 5.5420 2.4452 2.6774 10 6 6.3421 1.4619 3.4116 11 6 5.2131 3.7315 3.2967 12 1 4.5076 4.2528 2.6498 13 6 6.4885 4.5632 3.3923 14 6 6.1305 6.0290 3.3971 15 6 5.9605 6.5272 4.8438 16 7 5.2563 5.5451 5.6914 17 6 5.7157 5.3263 6.9627 18 1 5.5895 4.3576 7.4232 19 6 6.3435 6.3496 7.6595 20 7 6.3115 7.5798 7.1928 21 14 7.2338 5.9807 9.2598 22 1 8.3197 4.9998 9.0072 23 1 7.8151 7.2344 9.8032 24 1 6.2738 5.4147 10.2412 25 6 4.1014 4.8049 5.2347 26 6 4.5594 3.4740 4.5890 27 6 2.8402 3.1685 1.4431 28 6 2.2177 1.7709 1.4427 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.3449 1.9994 -0.5139 33 1 3.2111 0.9313 -1.7489 34 1 4.0241 0.5693 -0.2073 35 1 3.3163 3.3550 -1.2344 36 1 4.9425 2.6307 -1.2343 37 1 4.6321 4.1222 0.7222 38 1 5.6796 0.7650 3.9251 39 1 6.9749 0.9141 2.7134 40 1 6.9670 1.9749 4.1427 41 1 7.0166 4.3148 4.3130 42 1 7.1282 4.3479 2.5364 43 1 5.1975 6.1750 2.8526 44 1 6.9251 6.5948 2.9109 45 1 5.3925 7.4574 4.8333 46 1 6.9451 6.7205 5.2696 47 1 6.7498 8.2950 7.6799 48 1 3.5582 5.3975 4.4986 49 1 3.4493 4.5919 6.0818 50 1 3.6927 2.8315 4.4332 51 1 5.2626 2.9755 5.2562 52 1 2.9881 3.4997 2.4710 53 1 2.1751 3.8627 0.9294 54 1 1.2567 1.8011 1.9560 55 1 2.8828 1.0767 1.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948729114.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:46 Heat of formation + Delta-G solvation = -78.867111 kcal Electronic energy + Delta-G solvation = -32592.515697 eV Core-core repulsion = 28629.278077 eV Total energy + Delta-G solvation = -3963.237620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.01786 -39.91495 -39.06564 -37.04170 -36.78530 -34.30561 -33.27422 -31.84883 -31.77416 -31.39492 -28.35165 -27.74540 -27.11030 -25.83396 -24.97395 -23.74001 -23.48705 -21.95470 -21.19865 -20.94116 -19.69534 -18.47651 -17.91866 -17.50643 -17.19373 -16.91588 -16.63195 -16.21248 -16.02840 -15.76159 -15.44920 -15.27904 -15.22549 -14.76966 -14.51204 -14.41062 -14.16216 -13.89317 -13.81071 -13.59176 -13.27051 -13.25237 -13.02000 -12.97949 -12.89626 -12.82404 -12.68927 -12.52082 -12.36228 -12.05675 -12.02556 -11.87143 -11.74706 -11.63351 -11.47527 -11.43595 -11.39653 -11.31025 -11.27936 -10.44083 -10.37290 -10.28205 -9.59417 -8.54213 -7.81085 -5.30983 1.47593 1.48986 1.54736 1.69341 2.08757 2.53528 2.86702 3.33487 3.49125 3.67582 3.71020 3.79629 3.81993 4.05981 4.10882 4.18833 4.20966 4.32263 4.38126 4.44370 4.48708 4.49738 4.51961 4.54299 4.56761 4.58614 4.61158 4.75379 4.76825 4.79635 4.84776 4.88279 4.92217 4.98408 5.04000 5.06782 5.10313 5.16161 5.21100 5.22260 5.24947 5.29323 5.33139 5.39225 5.45983 5.58549 5.63881 5.72502 5.74842 5.89658 6.36905 6.47735 6.51141 7.25389 7.27045 8.01871 8.39592 9.22722 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002966 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.428691 B = 9438.486415 C = 9635.874120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.093 3.907 4 C -0.133 4.133 5 C -0.088 4.088 6 C -0.110 4.110 7 C 0.515 3.485 8 O -0.574 6.574 9 N -0.610 5.610 10 C 0.088 3.912 11 C 0.156 3.844 12 H 0.105 0.895 13 C -0.107 4.107 14 C -0.128 4.128 15 C 0.189 3.811 16 N -0.601 5.601 17 C -0.261 4.261 18 H 0.060 0.940 19 C -0.043 4.043 20 N -0.933 5.933 21 Si 0.956 3.044 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.278 1.278 25 C 0.160 3.840 26 C -0.141 4.141 27 C -0.112 4.112 28 C -0.137 4.137 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.069 0.931 45 H -0.002 1.002 46 H 0.034 0.966 47 H 0.247 0.753 48 H 0.053 0.947 49 H 0.040 0.960 50 H 0.071 0.929 51 H 0.047 0.953 52 H 0.078 0.922 53 H 0.105 0.895 54 H 0.074 0.926 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 -8.132 -16.227 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.036 3.964 4 C -0.170 4.170 5 C -0.126 4.126 6 C -0.131 4.131 7 C 0.305 3.695 8 O -0.454 6.454 9 N -0.342 5.342 10 C -0.055 4.055 11 C 0.054 3.946 12 H 0.123 0.877 13 C -0.145 4.145 14 C -0.167 4.167 15 C 0.064 3.936 16 N -0.323 5.323 17 C -0.391 4.391 18 H 0.078 0.922 19 C -0.239 4.239 20 N -0.579 5.579 21 Si 0.785 3.215 22 H -0.208 1.208 23 H -0.223 1.223 24 H -0.204 1.204 25 C 0.032 3.968 26 C -0.182 4.182 27 C -0.149 4.149 28 C -0.175 4.175 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.016 0.984 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.089 0.911 51 H 0.066 0.934 52 H 0.097 0.903 53 H 0.123 0.877 54 H 0.093 0.907 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.150 -8.679 -16.443 20.723 hybrid contribution 0.770 0.057 1.568 1.748 sum -8.380 -8.621 -14.875 19.126 Atomic orbital electron populations 1.22944 0.79921 1.03476 1.00799 1.87909 1.21171 1.29185 1.95189 1.22220 0.94972 0.84048 0.95191 1.21851 0.95664 0.99031 1.00489 1.21284 1.01575 0.96004 0.93722 1.21478 0.95773 0.99389 0.96497 1.21144 0.80473 0.87010 0.80835 1.90564 1.59157 1.29352 1.66339 1.48334 1.52633 1.17792 1.15421 1.21488 0.95366 0.92173 0.96443 1.20304 0.96694 0.82379 0.95244 0.87689 1.21243 0.97121 0.95148 1.01020 1.21847 1.01686 0.95539 0.97621 1.20767 0.95511 0.89378 0.87975 1.43794 1.30436 1.47008 1.11093 1.19374 1.33289 0.94590 0.91885 0.92208 1.25743 1.02712 0.94905 1.00501 1.70158 1.47321 0.99572 1.40823 0.85520 0.78815 0.76362 0.80779 1.20771 1.22283 1.20390 1.20718 0.88422 0.90831 0.96828 1.21683 1.00187 1.00047 0.96270 1.21700 0.94350 0.97144 1.01706 1.21979 1.01169 0.96865 0.97480 0.92748 0.89105 0.93479 0.90274 0.91729 0.90961 0.88441 0.91698 0.86778 0.93024 0.91813 0.91053 0.93378 0.91991 0.91007 0.91275 0.98379 0.94748 0.94329 0.92870 0.94186 0.91093 0.93423 0.90337 0.87706 0.90715 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.60 16 2 O -0.41 -9.72 10.35 -148.98 -1.54 -11.26 16 3 C 0.09 1.87 2.61 30.59 0.08 1.95 16 4 C -0.13 -3.00 5.28 30.59 0.16 -2.84 16 5 C -0.09 -1.62 5.13 30.59 0.16 -1.46 16 6 C -0.11 -2.18 2.15 -11.54 -0.02 -2.20 16 7 C 0.52 14.02 5.54 87.66 0.49 14.50 16 8 O -0.57 -19.25 13.06 -3.03 -0.04 -19.29 16 9 N -0.61 -16.51 2.59 -833.81 -2.16 -18.67 16 10 C 0.09 2.43 9.29 127.77 1.19 3.62 16 11 C 0.16 4.16 1.14 43.01 0.05 4.21 16 12 H 0.11 2.40 3.40 -2.39 -0.01 2.39 16 13 C -0.11 -3.25 4.58 29.76 0.14 -3.11 16 14 C -0.13 -4.06 5.71 30.23 0.17 -3.88 16 15 C 0.19 8.31 4.64 86.49 0.40 8.71 16 16 N -0.60 -27.19 2.26 -698.37 -1.58 -28.77 16 17 C -0.26 -13.47 9.42 84.03 0.79 -12.68 16 18 H 0.06 3.06 7.85 -2.91 -0.02 3.04 16 19 C -0.04 -2.31 4.97 84.86 0.42 -1.88 16 20 N -0.93 -53.01 10.96 21.65 0.24 -52.77 16 21 Si 0.96 43.85 29.57 68.60 2.03 45.88 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 25 C 0.16 5.74 5.66 87.37 0.49 6.23 16 26 C -0.14 -4.23 4.44 29.39 0.13 -4.10 16 27 C -0.11 -1.92 5.04 30.59 0.15 -1.77 16 28 C -0.14 -2.81 5.32 30.59 0.16 -2.65 16 29 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 0.64 7.87 -2.38 -0.02 0.62 16 32 H 0.08 1.21 7.79 -2.39 -0.02 1.19 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 2.20 5.28 -2.38 -0.01 2.19 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.11 1.92 7.34 -2.39 -0.02 1.90 16 38 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.06 1.80 7.48 -2.39 -0.02 1.79 16 40 H 0.07 1.97 7.31 -2.38 -0.02 1.96 16 41 H 0.05 1.79 7.35 -2.39 -0.02 1.77 16 42 H 0.06 1.74 8.05 -2.39 -0.02 1.72 16 43 H 0.07 1.93 7.32 -2.39 -0.02 1.92 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.00 -0.09 7.99 -2.39 -0.02 -0.11 16 46 H 0.03 1.76 6.46 -2.39 -0.02 1.74 16 47 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 48 H 0.05 1.70 8.07 -2.39 -0.02 1.68 16 49 H 0.04 1.51 7.99 -2.39 -0.02 1.49 16 50 H 0.07 1.90 7.63 -2.38 -0.02 1.88 16 51 H 0.05 1.65 7.34 -2.39 -0.02 1.63 16 52 H 0.08 1.45 4.94 -2.39 -0.01 1.44 16 53 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 54 H 0.07 1.36 7.87 -2.39 -0.02 1.34 16 55 H 0.04 1.05 7.22 -2.39 -0.02 1.03 16 Total: -1.00 -65.43 397.75 3.98 -61.45 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.85 Total: 19.18 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.19 Total: 4.25 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -3.50 Total: -100.21 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.58 Total: -30.55 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -65.43 3.98 -61.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948729114.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.417 kcal (2) G-P(sol) polarization free energy of solvation -65.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds