Wall clock time and date at job start Tue Mar 31 2020 22:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99879 * 2 1 4 4 C 1.53007 * 109.46981 * 209.99703 * 3 2 1 5 5 C 1.53009 * 109.46767 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47193 * 60.00495 * 5 4 3 7 7 C 1.50697 * 109.47320 * 59.99289 * 6 5 4 8 8 O 1.21282 * 119.99938 * 355.86863 * 7 6 5 9 9 N 1.34777 * 120.00316 * 175.86451 * 7 6 5 10 10 C 1.46497 * 120.00365 * 175.62993 * 9 7 6 11 11 C 1.46501 * 119.99667 * 355.62843 * 9 7 6 12 12 H 1.09000 * 110.21524 * 8.57238 * 11 9 7 13 13 C 1.50127 * 110.24858 * 130.66395 * 11 9 7 14 14 C 1.54845 * 110.81372 * 216.65642 * 13 11 9 15 15 C 1.54904 * 110.13967 * 321.13083 * 14 13 11 16 16 N 1.43432 * 116.07861 * 318.64249 * 15 14 13 17 17 C 1.36939 * 120.53539 * 271.83834 * 16 15 14 18 18 H 1.08005 * 120.00272 * 329.77335 * 17 16 15 19 19 C 1.38813 * 119.99808 * 149.76633 * 17 16 15 20 20 N 1.31621 * 120.00023 * 358.50767 * 19 17 16 21 21 Si 1.86800 * 120.00066 * 178.50356 * 19 17 16 22 22 H 1.48501 * 109.47252 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47242 * 120.00318 * 21 19 17 24 24 H 1.48508 * 109.46921 * 240.00462 * 21 19 17 25 25 C 1.50161 * 118.92773 * 91.57332 * 16 15 14 26 26 C 1.46242 * 107.52816 * 289.58342 * 25 16 15 27 27 C 1.53007 * 109.47050 * 299.99791 * 6 5 4 28 28 C 1.52996 * 109.47127 * 59.99914 * 27 6 5 29 29 H 1.09000 * 109.47068 * 60.00213 * 1 2 3 30 30 H 1.09003 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47231 * 299.99904 * 1 2 3 32 32 H 1.08994 * 109.47617 * 330.00076 * 3 2 1 33 33 H 1.08999 * 109.46942 * 60.00750 * 4 3 2 34 34 H 1.08994 * 109.47249 * 300.00041 * 4 3 2 35 35 H 1.08994 * 109.47161 * 299.99962 * 5 4 3 36 36 H 1.09005 * 109.46740 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.47341 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47294 * 274.70004 * 10 9 7 39 39 H 1.09001 * 109.47431 * 34.69649 * 10 9 7 40 40 H 1.08994 * 109.47431 * 154.70137 * 10 9 7 41 41 H 1.08999 * 109.20753 * 336.99456 * 13 11 9 42 42 H 1.08992 * 109.20993 * 96.35870 * 13 11 9 43 43 H 1.08997 * 109.36205 * 81.33509 * 14 13 11 44 44 H 1.08996 * 109.35668 * 201.06413 * 14 13 11 45 45 H 1.09003 * 108.15681 * 196.92743 * 15 14 13 46 46 H 1.08999 * 108.16031 * 80.35966 * 15 14 13 47 47 H 0.97002 * 119.99946 * 179.97438 * 20 19 17 48 48 H 1.08994 * 109.85290 * 49.09072 * 25 16 15 49 49 H 1.08999 * 109.84697 * 170.01284 * 25 16 15 50 50 H 1.09008 * 108.52171 * 179.64813 * 26 25 16 51 51 H 1.08993 * 108.52431 * 297.16910 * 26 25 16 52 52 H 1.08994 * 109.47224 * 180.02562 * 27 6 5 53 53 H 1.09003 * 109.46704 * 300.00273 * 27 6 5 54 54 H 1.08995 * 109.46911 * 180.02562 * 28 27 6 55 55 H 1.09003 * 109.47490 * 60.00283 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3590 1.2632 -0.7212 5 6 3.9815 2.6609 -0.7206 6 6 4.1890 3.1262 0.7220 7 6 5.1085 2.1663 1.4321 8 8 5.4941 1.1651 0.8664 9 7 5.5025 2.4204 2.6957 10 6 6.3177 1.4419 3.4196 11 6 5.1154 3.6751 3.3453 12 1 4.3935 4.2112 2.7291 13 6 4.5403 3.4006 4.7047 14 6 3.3777 4.3744 5.0171 15 6 3.7100 5.7904 4.4840 16 7 5.0582 6.2382 4.6818 17 6 5.4141 6.8860 5.8345 18 1 4.6885 7.4871 6.3623 19 6 6.7076 6.7701 6.3247 20 7 7.5837 6.0140 5.6978 21 14 7.2050 7.6873 7.8742 22 1 6.0453 8.4618 8.3847 23 1 7.6427 6.7140 8.9067 24 1 8.3221 8.6151 7.5632 25 6 6.0744 5.9797 3.6069 26 6 6.3452 4.5427 3.5931 27 6 2.8403 3.1683 1.4433 28 6 2.2177 1.7708 1.4427 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.3450 1.9993 -0.5138 33 1 3.2112 0.9314 -1.7489 34 1 4.0242 0.5693 -0.2074 35 1 3.3164 3.3551 -1.2342 36 1 4.9422 2.6309 -1.2349 37 1 4.6330 4.1216 0.7225 38 1 5.6678 0.7021 3.8870 39 1 6.9922 0.9443 2.7228 40 1 6.8998 1.9511 4.1877 41 1 4.1686 2.3764 4.7366 42 1 5.3209 3.5225 5.4555 43 1 2.4662 4.0137 4.5406 44 1 3.2268 4.4227 6.0955 45 1 3.0412 6.5015 4.9690 46 1 3.4993 5.8089 3.4148 47 1 8.4877 5.9333 6.0401 48 1 5.6782 6.2909 2.6404 49 1 6.9910 6.5279 3.8247 50 1 7.0777 4.3358 2.8128 51 1 6.7787 4.2627 4.5532 52 1 2.9881 3.5002 2.4709 53 1 2.1752 3.8626 0.9297 54 1 1.2568 1.8009 1.9561 55 1 2.8828 1.0764 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948729115.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:50 Heat of formation + Delta-G solvation = -68.764817 kcal Electronic energy + Delta-G solvation = -33106.922427 eV Core-core repulsion = 29144.122876 eV Total energy + Delta-G solvation = -3962.799552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.99456 -39.90667 -39.09685 -37.01844 -36.64798 -34.31360 -32.71875 -32.22491 -31.82305 -31.37887 -28.30274 -27.86868 -27.12855 -25.56391 -24.86398 -23.81790 -23.49761 -21.96437 -21.48949 -20.67556 -19.55844 -18.55076 -17.85597 -17.48311 -17.12823 -16.82889 -16.61816 -16.18656 -16.01214 -15.61136 -15.55949 -15.31788 -15.00853 -14.98655 -14.65051 -14.26050 -14.01831 -13.87153 -13.58271 -13.40158 -13.30781 -13.20090 -13.14869 -13.05761 -12.85925 -12.84841 -12.63150 -12.50126 -12.36477 -12.01036 -11.97675 -11.74278 -11.70878 -11.61634 -11.54152 -11.41665 -11.35274 -11.12502 -10.98502 -10.47885 -10.36357 -10.25491 -9.50038 -8.48942 -7.75895 -5.27615 1.47722 1.52381 1.58882 1.68886 2.10733 2.55916 2.87487 3.38496 3.49132 3.69278 3.71304 3.80896 3.90788 4.07309 4.16171 4.19643 4.21290 4.32115 4.38984 4.43819 4.50668 4.52975 4.55246 4.56938 4.59498 4.60984 4.67888 4.76139 4.80713 4.82724 4.86256 4.89982 4.92074 4.99896 5.05870 5.09182 5.16125 5.22087 5.25071 5.28085 5.32007 5.33854 5.41283 5.43944 5.53673 5.57732 5.70041 5.72563 5.86449 6.21043 6.38207 6.51646 6.56054 7.25302 7.27081 7.96980 8.47358 9.25702 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.003294 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.144157 B = 8497.320843 C = 8960.115441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.093 3.907 4 C -0.131 4.131 5 C -0.088 4.088 6 C -0.111 4.111 7 C 0.516 3.484 8 O -0.574 6.574 9 N -0.604 5.604 10 C 0.089 3.911 11 C 0.147 3.853 12 H 0.116 0.884 13 C -0.104 4.104 14 C -0.134 4.134 15 C 0.148 3.852 16 N -0.602 5.602 17 C -0.251 4.251 18 H 0.062 0.938 19 C -0.039 4.039 20 N -0.918 5.918 21 Si 0.954 3.046 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.296 1.296 25 C 0.169 3.831 26 C -0.120 4.120 27 C -0.115 4.115 28 C -0.135 4.135 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.042 0.958 45 H 0.032 0.968 46 H 0.051 0.949 47 H 0.244 0.756 48 H 0.023 0.977 49 H 0.068 0.932 50 H 0.025 0.975 51 H 0.069 0.931 52 H 0.080 0.920 53 H 0.105 0.895 54 H 0.077 0.923 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.218 -6.436 -11.253 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.036 3.964 4 C -0.168 4.168 5 C -0.125 4.125 6 C -0.132 4.132 7 C 0.306 3.694 8 O -0.455 6.455 9 N -0.335 5.335 10 C -0.054 4.054 11 C 0.045 3.955 12 H 0.133 0.867 13 C -0.143 4.143 14 C -0.175 4.175 15 C 0.020 3.980 16 N -0.324 5.324 17 C -0.382 4.382 18 H 0.080 0.920 19 C -0.234 4.234 20 N -0.565 5.565 21 Si 0.784 3.216 22 H -0.197 1.197 23 H -0.226 1.226 24 H -0.223 1.223 25 C 0.046 3.954 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.173 4.173 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.041 0.959 49 H 0.086 0.914 50 H 0.043 0.957 51 H 0.087 0.913 52 H 0.098 0.902 53 H 0.124 0.876 54 H 0.096 0.904 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.737 -7.118 -11.482 18.567 hybrid contribution 0.992 0.344 1.530 1.856 sum -11.745 -6.774 -9.951 16.818 Atomic orbital electron populations 1.22949 0.79882 1.03482 1.00844 1.87907 1.21212 1.29090 1.95187 1.22210 0.94890 0.84119 0.95160 1.21813 0.95668 0.98732 1.00595 1.21279 1.01568 0.96177 0.93517 1.21464 0.95942 0.99065 0.96709 1.21125 0.80679 0.86717 0.80898 1.90560 1.58101 1.30594 1.66237 1.48156 1.51840 1.19622 1.13924 1.21477 0.95087 0.92156 0.96654 1.20778 0.97165 0.83156 0.94434 0.86695 1.21589 0.98525 0.98378 0.95778 1.22785 0.96787 0.97289 1.00624 1.20610 0.86107 0.92973 0.98267 1.44268 1.06483 1.65069 1.16603 1.19427 0.96188 1.21811 1.00785 0.92028 1.25674 0.98077 0.99599 1.00067 1.70037 1.04022 1.42151 1.40287 0.85400 0.77644 0.77698 0.80808 1.19690 1.22559 1.22342 1.20064 0.93780 0.93959 0.87637 1.21183 0.95922 0.97447 1.01437 1.21776 0.94191 0.97409 1.01810 1.21964 1.01193 0.96613 0.97507 0.92746 0.89093 0.93395 0.90089 0.91506 0.91279 0.88306 0.91864 0.87517 0.92614 0.91868 0.91459 0.92775 0.94314 0.90044 0.93891 0.94933 0.93027 0.94595 0.95896 0.91405 0.95664 0.91285 0.90200 0.87611 0.90412 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.41 -9.97 10.35 -148.98 -1.54 -11.51 16 3 C 0.09 1.99 2.61 30.60 0.08 2.06 16 4 C -0.13 -3.16 5.28 30.60 0.16 -3.00 16 5 C -0.09 -1.84 5.11 30.60 0.16 -1.68 16 6 C -0.11 -2.59 2.16 -11.54 -0.02 -2.62 16 7 C 0.52 16.02 5.54 87.66 0.49 16.51 16 8 O -0.57 -21.07 13.15 -3.03 -0.04 -21.11 16 9 N -0.60 -19.11 2.66 -828.71 -2.21 -21.32 16 10 C 0.09 2.80 9.32 127.77 1.19 4.00 16 11 C 0.15 4.71 1.31 43.91 0.06 4.77 16 12 H 0.12 3.29 2.38 -2.39 -0.01 3.29 16 13 C -0.10 -3.50 4.53 30.30 0.14 -3.37 16 14 C -0.13 -4.19 6.00 31.88 0.19 -4.00 16 15 C 0.15 5.21 5.17 87.60 0.45 5.66 16 16 N -0.60 -26.57 2.60 -707.85 -1.84 -28.41 16 17 C -0.25 -12.66 9.63 84.03 0.81 -11.85 16 18 H 0.06 3.10 7.83 -2.91 -0.02 3.08 16 19 C -0.04 -1.99 5.27 84.86 0.45 -1.54 16 20 N -0.92 -48.96 8.84 21.65 0.19 -48.77 16 21 Si 0.95 42.96 29.55 68.60 2.03 44.98 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 25 C 0.17 7.25 5.24 83.58 0.44 7.69 16 26 C -0.12 -4.77 4.07 28.36 0.12 -4.66 16 27 C -0.11 -2.26 5.01 30.60 0.15 -2.10 16 28 C -0.13 -2.95 5.32 30.59 0.16 -2.79 16 29 H 0.05 0.67 8.08 -2.39 -0.02 0.65 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 32 H 0.08 1.31 7.79 -2.39 -0.02 1.29 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 2.22 5.36 -2.39 -0.01 2.21 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.11 2.35 7.55 -2.39 -0.02 2.33 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 2.03 7.51 -2.39 -0.02 2.01 16 40 H 0.07 2.20 7.45 -2.39 -0.02 2.18 16 41 H 0.05 1.68 7.63 -2.39 -0.02 1.67 16 42 H 0.04 1.61 6.82 -2.39 -0.02 1.60 16 43 H 0.08 1.99 7.54 -2.39 -0.02 1.98 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 46 H 0.05 1.55 6.89 -2.39 -0.02 1.53 16 47 H 0.24 12.99 8.31 -92.71 -0.77 12.22 16 48 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 49 H 0.07 3.43 5.97 -2.39 -0.01 3.41 16 50 H 0.02 1.00 8.02 -2.38 -0.02 0.98 16 51 H 0.07 3.27 5.15 -2.39 -0.01 3.26 16 52 H 0.08 1.72 4.16 -2.39 -0.01 1.71 16 53 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 54 H 0.08 1.46 7.87 -2.39 -0.02 1.45 16 55 H 0.04 1.08 7.22 -2.39 -0.02 1.06 16 Total: -1.00 -61.43 391.40 3.69 -57.74 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.86 Total: 23.70 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 6.24 Total: 4.70 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -3.86 Total: -98.50 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.58 Total: -32.62 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -61.43 3.69 -57.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948729115.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.030 kcal (2) G-P(sol) polarization free energy of solvation -61.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds