Wall clock time and date at job start Tue Mar 31 2020 22:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 113.99809 * 2 1 4 4 C 1.52994 * 109.47251 * 149.99985 * 3 2 1 5 5 C 1.53002 * 109.47369 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46898 * 299.99855 * 5 4 3 7 7 C 1.50704 * 109.47158 * 300.00044 * 6 5 4 8 8 O 1.21285 * 119.99558 * 352.50767 * 7 6 5 9 9 N 1.34769 * 120.00138 * 172.50703 * 7 6 5 10 10 C 1.46502 * 119.99884 * 185.16444 * 9 7 6 11 11 C 1.52998 * 109.47158 * 184.06719 * 10 9 7 12 12 H 1.09001 * 109.45386 * 63.05767 * 11 10 9 13 13 C 1.54865 * 109.45052 * 182.98131 * 11 10 9 14 14 C 1.47103 * 110.32165 * 191.29282 * 13 11 10 15 15 C 1.52561 * 114.32768 * 297.18959 * 14 13 11 16 16 C 1.50882 * 109.34925 * 85.02617 * 15 14 13 17 17 C 1.53945 * 110.09644 * 268.10924 * 16 15 14 18 18 N 1.44585 * 109.44685 * 303.11214 * 11 10 9 19 19 C 1.36929 * 118.64023 * 329.26347 * 18 11 10 20 20 H 1.07995 * 120.00222 * 331.93316 * 19 18 11 21 21 C 1.38818 * 119.99704 * 151.92956 * 19 18 11 22 22 N 1.31617 * 120.00207 * 342.89898 * 21 19 18 23 23 Si 1.86801 * 119.99773 * 162.89228 * 21 19 18 24 24 H 1.48495 * 109.47028 * 93.75791 * 23 21 19 25 25 H 1.48503 * 109.47135 * 213.75539 * 23 21 19 26 26 H 1.48494 * 109.47296 * 333.75340 * 23 21 19 27 27 C 1.53001 * 109.47366 * 59.99627 * 6 5 4 28 28 C 1.52998 * 109.47187 * 300.00542 * 27 6 5 29 29 H 1.08997 * 109.47335 * 300.00031 * 1 2 3 30 30 H 1.09003 * 109.46986 * 60.00568 * 1 2 3 31 31 H 1.09007 * 109.46658 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47537 * 29.99454 * 3 2 1 33 33 H 1.08996 * 109.47420 * 59.99834 * 4 3 2 34 34 H 1.09007 * 109.47070 * 299.99371 * 4 3 2 35 35 H 1.08998 * 109.47542 * 59.99393 * 5 4 3 36 36 H 1.09000 * 109.47485 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.47445 * 180.02562 * 6 5 4 38 38 H 0.97003 * 120.00357 * 5.15809 * 9 7 6 39 39 H 1.09004 * 109.47254 * 304.06117 * 10 9 7 40 40 H 1.08993 * 109.47574 * 64.06405 * 10 9 7 41 41 H 1.08997 * 109.33127 * 311.54543 * 13 11 10 42 42 H 1.08997 * 109.33423 * 71.03340 * 13 11 10 43 43 H 1.09000 * 108.51444 * 175.93552 * 14 13 11 44 44 H 1.08997 * 108.51240 * 58.44499 * 14 13 11 45 45 H 1.09007 * 109.49675 * 325.06684 * 15 14 13 46 46 H 1.08993 * 109.49322 * 204.99119 * 15 14 13 47 47 H 1.09010 * 109.36778 * 147.92289 * 16 15 14 48 48 H 1.09002 * 109.26631 * 28.23846 * 16 15 14 49 49 H 1.09000 * 108.95104 * 279.87945 * 17 16 15 50 50 H 1.08996 * 108.87687 * 161.19787 * 17 16 15 51 51 H 0.96996 * 120.00057 * 180.02562 * 22 21 19 52 52 H 1.08996 * 109.47275 * 180.02562 * 27 6 5 53 53 H 1.09004 * 109.46458 * 59.99790 * 27 6 5 54 54 H 1.08998 * 109.47260 * 299.99806 * 28 27 6 55 55 H 1.09000 * 109.47256 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3588 1.2633 0.7212 5 6 3.9808 2.6612 0.7218 6 6 4.1882 3.1277 -0.7206 7 6 5.1082 2.1687 -1.4313 8 8 5.6615 1.2862 -0.8101 9 7 5.3162 2.2919 -2.7572 10 6 6.1191 1.2941 -3.4685 11 6 6.2841 1.7192 -4.9289 12 1 6.8332 2.6597 -4.9735 13 6 7.0686 0.6278 -5.6982 14 6 7.4724 1.1262 -7.0220 15 6 6.3081 1.4748 -7.9442 16 6 5.8481 2.8831 -7.6582 17 6 4.7230 2.8689 -6.6075 18 7 4.9806 1.8938 -5.5296 19 6 3.9421 1.1230 -5.0798 20 1 4.1358 0.1453 -4.6641 21 6 2.6402 1.5985 -5.1582 22 7 2.4185 2.8831 -5.3392 23 14 1.2030 0.4149 -5.0068 24 1 0.7506 0.3637 -3.5933 25 1 0.0858 0.8801 -5.8675 26 1 1.6298 -0.9400 -5.4393 27 6 2.8396 3.1698 -1.4419 28 6 2.2176 1.7719 -1.4424 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.3450 1.9994 0.5137 33 1 4.0241 0.5694 0.2075 34 1 3.2111 0.9315 1.7490 35 1 3.3154 3.3548 1.2358 36 1 4.9419 2.6311 1.2352 37 1 4.6317 4.1233 -0.7203 38 1 4.9341 3.0411 -3.2406 39 1 7.1002 1.2160 -2.9999 40 1 5.6182 0.3271 -3.4259 41 1 7.9573 0.3538 -5.1296 42 1 6.4368 -0.2517 -5.8213 43 1 8.0822 0.3643 -7.5075 44 1 8.0838 2.0180 -6.8844 45 1 5.4855 0.7811 -7.7698 46 1 6.6319 1.4018 -8.9824 47 1 5.4780 3.3363 -8.5779 48 1 6.6881 3.4661 -7.2805 49 1 3.7837 2.6141 -7.0982 50 1 4.6355 3.8639 -6.1711 51 1 1.5088 3.2154 -5.3935 52 1 2.9874 3.5016 -2.4696 53 1 2.1742 3.8633 -0.9278 54 1 2.8830 1.0783 -1.9563 55 1 1.2566 1.8020 -1.9559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969007406.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:14 Heat of formation + Delta-G solvation = -97.515433 kcal Electronic energy + Delta-G solvation = -33340.100386 eV Core-core repulsion = 29376.054114 eV Total energy + Delta-G solvation = -3964.046272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.45070 -39.90148 -39.15272 -36.93169 -35.94987 -35.16562 -33.32111 -32.46834 -31.53965 -31.21083 -28.57523 -27.56835 -27.07854 -25.18104 -24.38556 -23.62940 -23.10218 -21.90924 -21.27927 -20.76943 -20.09299 -18.16065 -17.67869 -17.41013 -17.23532 -16.94079 -16.50834 -16.11399 -16.07388 -15.98171 -15.69238 -15.19792 -14.99983 -14.84485 -14.63045 -14.32889 -14.09008 -14.01809 -13.66036 -13.41163 -13.32955 -13.16069 -13.10721 -12.89272 -12.77741 -12.73993 -12.61319 -12.49852 -12.39635 -12.03160 -11.95305 -11.68771 -11.52989 -11.43456 -11.39913 -11.34017 -11.26829 -11.18282 -10.98888 -10.40505 -10.38328 -10.26949 -9.64445 -8.49459 -7.75586 -5.15714 1.38874 1.44366 1.50202 1.89020 2.54024 2.61304 2.83724 3.40083 3.63461 3.71948 3.76883 3.98191 4.05293 4.07932 4.12034 4.18551 4.27643 4.31814 4.38563 4.43273 4.45082 4.48236 4.50567 4.55948 4.59616 4.63233 4.69853 4.71868 4.81362 4.89860 4.95464 5.01993 5.07381 5.11188 5.11494 5.14951 5.26020 5.27435 5.28995 5.35031 5.38982 5.41924 5.43588 5.51472 5.56650 5.68791 5.75612 5.80417 5.87063 5.92531 6.30223 6.51670 6.90863 7.32613 7.54355 8.05390 8.44478 9.27774 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.004942 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.556405 B = 5664.789400 C = 6885.150888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.091 3.909 4 C -0.120 4.120 5 C -0.084 4.084 6 C -0.104 4.104 7 C 0.511 3.489 8 O -0.591 6.591 9 N -0.693 5.693 10 C 0.136 3.864 11 C 0.176 3.824 12 H 0.056 0.944 13 C -0.129 4.129 14 C -0.099 4.099 15 C -0.103 4.103 16 C -0.133 4.133 17 C 0.191 3.809 18 N -0.584 5.584 19 C -0.232 4.232 20 H 0.037 0.963 21 C 0.000 4.000 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.296 1.296 27 C -0.096 4.096 28 C -0.127 4.127 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.408 0.592 39 H 0.060 0.940 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.006 0.994 51 H 0.245 0.755 52 H 0.066 0.934 53 H 0.093 0.907 54 H 0.035 0.965 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 4.315 6.098 8.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.034 3.966 4 C -0.158 4.158 5 C -0.122 4.122 6 C -0.125 4.125 7 C 0.298 3.702 8 O -0.473 6.473 9 N -0.341 5.341 10 C 0.010 3.990 11 C 0.068 3.932 12 H 0.074 0.926 13 C -0.169 4.169 14 C -0.137 4.137 15 C -0.141 4.141 16 C -0.171 4.171 17 C 0.066 3.934 18 N -0.306 5.306 19 C -0.363 4.363 20 H 0.055 0.945 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.736 3.264 24 H -0.210 1.210 25 H -0.225 1.225 26 H -0.223 1.223 27 C -0.134 4.134 28 C -0.165 4.165 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.139 0.861 38 H 0.244 0.756 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.055 0.945 50 H 0.024 0.976 51 H 0.055 0.945 52 H 0.085 0.915 53 H 0.112 0.888 54 H 0.054 0.946 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.480 3.637 6.472 8.199 hybrid contribution -1.747 -0.716 -0.703 2.014 sum 1.734 2.921 5.769 6.695 Atomic orbital electron populations 1.22915 0.80258 1.03450 1.00335 1.87885 1.20966 1.29488 1.95134 1.22321 0.95488 0.83876 0.94915 1.21673 0.94568 0.99153 1.00365 1.21273 1.01779 0.95356 0.93774 1.21435 0.95012 0.99722 0.96326 1.21019 0.81325 0.85519 0.82311 1.90567 1.52191 1.37544 1.67010 1.45768 1.52278 1.28293 1.07786 1.21343 0.93535 0.91412 0.92662 1.20621 0.87112 0.96368 0.89123 0.92605 1.21288 0.99367 0.98944 0.97339 1.20263 0.97372 1.01019 0.95029 1.20901 0.97953 0.96828 0.98392 1.21944 0.99215 0.96982 0.98999 1.20762 0.94904 0.90572 0.87165 1.43706 1.04364 1.44144 1.38432 1.18753 0.86344 0.95646 1.35523 0.94539 1.24892 0.97892 0.95256 1.01698 1.70072 1.18876 1.10987 1.55003 0.86311 0.82608 0.80086 0.77360 1.21037 1.22492 1.22266 1.21383 0.94874 0.95903 1.01193 1.21881 0.99863 0.97861 0.96869 0.91615 0.95389 0.88879 0.90090 0.92714 0.90694 0.88240 0.90730 0.86067 0.75619 0.92209 0.94965 0.91266 0.94318 0.92198 0.91974 0.94057 0.91921 0.92072 0.92194 0.94506 0.97554 0.94474 0.91525 0.88837 0.94638 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.82 113.37 1.23 1.96 16 2 O -0.42 -14.83 10.35 -148.98 -1.54 -16.37 16 3 C 0.09 2.93 2.61 30.59 0.08 3.01 16 4 C -0.12 -3.75 5.28 30.59 0.16 -3.59 16 5 C -0.08 -2.15 5.07 30.60 0.16 -2.00 16 6 C -0.10 -3.01 3.04 -11.54 -0.04 -3.04 16 7 C 0.51 19.02 5.58 87.66 0.49 19.50 16 8 O -0.59 -25.33 13.97 -3.05 -0.04 -25.38 16 9 N -0.69 -26.42 4.65 -463.06 -2.15 -28.57 16 10 C 0.14 5.25 4.54 86.38 0.39 5.64 16 11 C 0.18 6.40 2.18 45.99 0.10 6.50 16 12 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 13 C -0.13 -4.17 5.06 29.40 0.15 -4.02 16 14 C -0.10 -2.82 5.15 28.61 0.15 -2.68 16 15 C -0.10 -3.25 5.51 29.76 0.16 -3.08 16 16 C -0.13 -4.35 5.71 30.22 0.17 -4.18 16 17 C 0.19 7.98 4.67 86.49 0.40 8.39 16 18 N -0.58 -24.79 1.78 -674.23 -1.20 -26.00 16 19 C -0.23 -11.41 7.70 84.04 0.65 -10.77 16 20 H 0.04 1.98 6.71 -2.91 -0.02 1.96 16 21 C 0.00 0.01 4.82 84.86 0.41 0.42 16 22 N -0.90 -45.81 11.22 21.65 0.24 -45.57 16 23 Si 0.90 43.94 29.59 68.60 2.03 45.97 16 24 H -0.28 -13.84 6.49 99.48 0.65 -13.19 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 26 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 27 C -0.10 -3.00 5.29 30.59 0.16 -2.84 16 28 C -0.13 -4.76 5.32 30.60 0.16 -4.60 16 29 H 0.07 1.40 8.08 -2.39 -0.02 1.39 16 30 H 0.03 0.82 7.87 -2.39 -0.02 0.80 16 31 H 0.09 2.25 8.14 -2.38 -0.02 2.24 16 32 H 0.08 2.11 7.79 -2.39 -0.02 2.10 16 33 H 0.05 2.18 5.79 -2.39 -0.01 2.17 16 34 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.90 8.02 -2.39 -0.02 1.88 16 37 H 0.12 2.81 8.14 -2.39 -0.02 2.80 16 38 H 0.41 16.03 7.21 -92.71 -0.67 15.37 16 39 H 0.06 2.17 8.12 -2.39 -0.02 2.15 16 40 H 0.03 1.45 6.73 -2.39 -0.02 1.44 16 41 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.61 7.36 -2.39 -0.02 1.59 16 45 H 0.04 1.58 7.48 -2.38 -0.02 1.56 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 48 H 0.06 1.80 7.31 -2.39 -0.02 1.78 16 49 H 0.04 1.78 6.49 -2.39 -0.02 1.77 16 50 H 0.01 0.29 8.02 -2.39 -0.02 0.27 16 51 H 0.25 12.53 8.31 -92.71 -0.77 11.76 16 52 H 0.07 2.47 7.28 -2.39 -0.02 2.45 16 53 H 0.09 2.33 8.14 -2.38 -0.02 2.32 16 54 H 0.03 1.63 7.22 -2.39 -0.02 1.62 16 55 H 0.04 1.68 7.26 -2.39 -0.02 1.66 16 Total: -1.00 -59.80 403.13 2.44 -57.36 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.12 Total: 33.94 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.99 Total: 4.62 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -3.11 Total: -100.14 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.58 Total: -41.75 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -59.80 2.44 -57.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969007406.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.160 kcal (2) G-P(sol) polarization free energy of solvation -59.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds