Wall clock time and date at job start Tue Mar 31 2020 22:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99403 * 2 1 4 4 C 1.53001 * 109.46687 * 150.00244 * 3 2 1 5 5 C 1.53001 * 109.47172 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46567 * 299.99662 * 5 4 3 7 7 C 1.50704 * 109.46982 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00015 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00089 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00057 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46950 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.42636 * 295.06296 * 11 10 9 13 13 C 1.54314 * 109.18660 * 175.34884 * 11 10 9 14 14 C 1.47088 * 110.29445 * 168.69534 * 13 11 10 15 15 C 1.52566 * 114.33226 * 62.72921 * 14 13 11 16 16 C 1.50886 * 109.35433 * 274.98428 * 15 14 13 17 17 C 1.53949 * 110.09330 * 91.88272 * 16 15 14 18 18 N 1.44576 * 109.45029 * 55.00395 * 11 10 9 19 19 C 1.36932 * 118.64676 * 30.75568 * 18 11 10 20 20 H 1.08001 * 119.99925 * 27.87415 * 19 18 11 21 21 C 1.38816 * 120.00232 * 207.87684 * 19 18 11 22 22 N 1.31614 * 119.99716 * 15.49978 * 21 19 18 23 23 Si 1.86795 * 119.99832 * 195.49893 * 21 19 18 24 24 H 1.48502 * 109.47219 * 265.60119 * 23 21 19 25 25 H 1.48505 * 109.47260 * 145.60325 * 23 21 19 26 26 H 1.48499 * 109.47567 * 25.60348 * 23 21 19 27 27 C 1.53000 * 109.47338 * 59.99989 * 6 5 4 28 28 C 1.52993 * 109.47064 * 299.99940 * 27 6 5 29 29 H 1.08997 * 109.47740 * 60.00080 * 1 2 3 30 30 H 1.09003 * 109.46722 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47605 * 299.99838 * 1 2 3 32 32 H 1.08999 * 109.47320 * 30.00214 * 3 2 1 33 33 H 1.09001 * 109.47342 * 59.99397 * 4 3 2 34 34 H 1.09004 * 109.47036 * 299.99544 * 4 3 2 35 35 H 1.09001 * 109.47099 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.47231 * 59.99727 * 5 4 3 37 37 H 1.08999 * 109.47398 * 299.99963 * 6 5 4 38 38 H 0.97000 * 120.00268 * 359.97438 * 9 7 6 39 39 H 1.09000 * 109.47183 * 59.99415 * 10 9 7 40 40 H 1.08999 * 109.46945 * 299.99754 * 10 9 7 41 41 H 1.08996 * 109.40316 * 48.39687 * 13 11 10 42 42 H 1.09004 * 109.28276 * 288.90878 * 13 11 10 43 43 H 1.09003 * 108.50823 * 301.47651 * 14 13 11 44 44 H 1.08997 * 108.51273 * 183.98606 * 14 13 11 45 45 H 1.08997 * 109.49388 * 155.01607 * 15 14 13 46 46 H 1.08999 * 109.48778 * 34.94404 * 15 14 13 47 47 H 1.08996 * 109.36492 * 331.69000 * 16 15 14 48 48 H 1.08996 * 109.36080 * 212.07705 * 16 15 14 49 49 H 1.09001 * 108.94106 * 198.74548 * 17 16 15 50 50 H 1.09000 * 108.94593 * 80.12862 * 17 16 15 51 51 H 0.97008 * 119.99889 * 179.97438 * 22 21 19 52 52 H 1.08999 * 109.46898 * 59.99668 * 27 6 5 53 53 H 1.08998 * 109.47435 * 179.97438 * 27 6 5 54 54 H 1.08999 * 109.47041 * 299.99640 * 28 27 6 55 55 H 1.09001 * 109.46862 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3588 1.2634 0.7212 5 6 3.9808 2.6612 0.7218 6 6 4.1881 3.1277 -0.7205 7 6 4.8013 4.5043 -0.7200 8 8 5.0478 5.0580 0.3305 9 7 5.0749 5.1206 -1.8870 10 6 5.6705 6.4591 -1.8865 11 6 5.8780 6.9255 -3.3288 12 1 6.6109 6.2824 -3.8159 13 6 6.3955 8.3792 -3.3223 14 6 6.8576 8.7623 -4.6651 15 6 5.7668 8.7527 -5.7317 16 6 5.6190 7.3561 -6.2833 17 6 4.5452 6.5863 -5.4931 18 7 4.6233 6.8529 -4.0434 19 6 3.4595 7.0446 -3.3477 20 1 3.4561 7.6598 -2.4601 21 6 2.2841 6.4482 -3.7834 22 7 2.3292 5.4704 -4.6631 23 14 0.6386 7.0336 -3.1209 24 1 0.2392 6.1864 -1.9685 25 1 -0.3888 6.9334 -4.1885 26 1 0.7570 8.4464 -2.6791 27 6 2.8395 3.1698 -1.4418 28 6 2.2175 1.7720 -1.4423 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.3448 1.9994 0.5139 33 1 4.0241 0.5694 0.2074 34 1 3.2110 0.9314 1.7489 35 1 4.9418 2.6311 1.2353 36 1 3.3154 3.3548 1.2359 37 1 4.8535 2.4342 -1.2346 38 1 4.8775 4.6780 -2.7272 39 1 6.6315 6.4290 -1.3729 40 1 5.0053 7.1526 -1.3721 41 1 7.2225 8.4660 -2.6176 42 1 5.5907 9.0465 -3.0137 43 1 7.6454 8.0733 -4.9696 44 1 7.2812 9.7652 -4.6123 45 1 6.0395 9.4348 -6.5370 46 1 4.8228 9.0708 -5.2893 47 1 6.5718 6.8329 -6.2025 48 1 5.3266 7.4108 -7.3318 49 1 4.6778 5.5180 -5.6643 50 1 3.5602 6.8813 -5.8547 51 1 1.5078 5.0533 -4.9673 52 1 2.1740 3.8634 -0.9277 53 1 2.9871 3.5026 -2.4692 54 1 2.8830 1.0785 -1.9564 55 1 1.2565 1.8022 -1.9558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969007407.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:18 Heat of formation + Delta-G solvation = -103.563960 kcal Electronic energy + Delta-G solvation = -32293.141191 eV Core-core repulsion = 28328.832635 eV Total energy + Delta-G solvation = -3964.308556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.20494 -39.97959 -39.33795 -37.08705 -35.96206 -35.19022 -33.32017 -32.46438 -31.73255 -31.25799 -28.59563 -27.56319 -27.02949 -25.18959 -24.38763 -23.68421 -23.07799 -21.52136 -21.13310 -20.77578 -20.52346 -18.46040 -17.68854 -17.44623 -17.27435 -16.89610 -16.56214 -16.14600 -16.06122 -15.95542 -15.56902 -15.20296 -15.07019 -14.85293 -14.60988 -14.52170 -14.14029 -14.02616 -13.65908 -13.40763 -13.27290 -13.17024 -13.10084 -12.94873 -12.82142 -12.79935 -12.69427 -12.38060 -12.24836 -12.12653 -12.00103 -11.92203 -11.56835 -11.50980 -11.39394 -11.33675 -11.30142 -11.18592 -11.00882 -10.55697 -10.41164 -10.30495 -9.72699 -8.51321 -7.76285 -5.18142 1.38494 1.45409 1.49648 1.80052 2.49910 2.55945 2.78619 3.38692 3.62387 3.67480 3.71674 3.85969 4.05118 4.10566 4.11430 4.15979 4.25551 4.28740 4.37299 4.43213 4.46160 4.48648 4.51191 4.53386 4.53923 4.63826 4.69109 4.75452 4.81121 4.84936 4.91524 4.99634 5.02186 5.09805 5.11939 5.14978 5.16176 5.21369 5.27600 5.28289 5.36804 5.39187 5.39964 5.44191 5.56613 5.68294 5.74027 5.78275 5.83822 5.92799 6.24934 6.50479 6.83177 7.30580 7.45731 8.03910 8.42747 9.26954 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.003828 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.624004 B = 7312.815296 C = 8399.794525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.088 3.912 4 C -0.104 4.104 5 C -0.087 4.087 6 C -0.097 4.097 7 C 0.508 3.492 8 O -0.597 6.597 9 N -0.689 5.689 10 C 0.132 3.868 11 C 0.175 3.825 12 H 0.056 0.944 13 C -0.129 4.129 14 C -0.100 4.100 15 C -0.103 4.103 16 C -0.133 4.133 17 C 0.191 3.809 18 N -0.587 5.587 19 C -0.232 4.232 20 H 0.043 0.957 21 C -0.014 4.014 22 N -0.909 5.909 23 Si 0.918 3.082 24 H -0.295 1.295 25 H -0.295 1.295 26 H -0.287 1.287 27 C -0.096 4.096 28 C -0.127 4.127 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.408 0.592 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.041 0.959 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.005 0.995 50 H 0.038 0.962 51 H 0.245 0.755 52 H 0.039 0.961 53 H 0.068 0.932 54 H 0.080 0.920 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 -6.460 2.927 8.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.031 3.969 4 C -0.141 4.141 5 C -0.125 4.125 6 C -0.118 4.118 7 C 0.296 3.704 8 O -0.480 6.480 9 N -0.337 5.337 10 C 0.007 3.993 11 C 0.067 3.933 12 H 0.074 0.926 13 C -0.170 4.170 14 C -0.137 4.137 15 C -0.141 4.141 16 C -0.172 4.172 17 C 0.066 3.934 18 N -0.309 5.309 19 C -0.362 4.362 20 H 0.060 0.940 21 C -0.211 4.211 22 N -0.555 5.555 23 Si 0.750 3.250 24 H -0.223 1.223 25 H -0.222 1.222 26 H -0.213 1.213 27 C -0.134 4.134 28 C -0.164 4.164 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.244 0.756 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.023 0.977 50 H 0.056 0.944 51 H 0.055 0.945 52 H 0.058 0.942 53 H 0.087 0.913 54 H 0.098 0.902 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.823 -6.319 3.535 8.700 hybrid contribution -1.946 0.755 -0.184 2.095 sum 2.877 -5.564 3.351 7.104 Atomic orbital electron populations 1.22950 0.80186 1.03801 1.00294 1.87849 1.20809 1.27998 1.95152 1.22198 0.95475 0.84065 0.95207 1.21522 0.94693 0.96529 1.01375 1.21221 1.01628 0.95773 0.93871 1.21327 0.97791 0.93252 0.99429 1.21014 0.77542 0.88609 0.83264 1.90592 1.56172 1.68629 1.32599 1.45774 1.61478 1.17780 1.08678 1.21439 0.96215 0.83662 0.97955 1.20532 0.88311 0.94737 0.89693 0.92588 1.21206 1.00010 0.97870 0.97896 1.20267 0.97738 1.01213 0.94519 1.20903 0.98876 0.96534 0.97773 1.21943 0.99626 0.96564 0.99040 1.20763 0.96049 0.94770 0.81812 1.43737 1.00701 1.83078 1.03381 1.18863 0.87128 1.22191 1.08056 0.93973 1.25085 0.98978 0.96947 1.00114 1.70090 1.25909 1.24125 1.35328 0.86046 0.83793 0.77946 0.77262 1.22284 1.22162 1.21328 1.21295 0.94498 0.96927 1.00700 1.21902 1.01259 0.95822 0.97453 0.94283 0.87903 0.93467 0.92693 0.90024 0.89993 0.90414 0.92949 0.86837 0.75553 0.91886 0.94428 0.90998 0.94144 0.91997 0.92116 0.91917 0.94004 0.92216 0.92148 0.97733 0.94383 0.94481 0.94246 0.91323 0.90184 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.82 113.37 1.23 1.70 16 2 O -0.40 -9.98 10.35 -148.98 -1.54 -11.52 16 3 C 0.09 2.25 2.61 30.59 0.08 2.33 16 4 C -0.10 -2.40 5.57 30.60 0.17 -2.23 16 5 C -0.09 -2.39 4.49 30.60 0.14 -2.25 16 6 C -0.10 -2.97 2.52 -11.54 -0.03 -3.00 16 7 C 0.51 19.30 7.16 87.66 0.63 19.93 16 8 O -0.60 -26.10 15.98 -3.04 -0.05 -26.15 16 9 N -0.69 -26.22 4.61 -463.05 -2.14 -28.36 16 10 C 0.13 4.97 4.50 86.38 0.39 5.36 16 11 C 0.18 6.24 2.17 45.80 0.10 6.34 16 12 H 0.06 1.90 8.06 -2.39 -0.02 1.88 16 13 C -0.13 -4.05 5.04 29.20 0.15 -3.90 16 14 C -0.10 -2.77 5.15 28.61 0.15 -2.62 16 15 C -0.10 -3.20 5.51 29.76 0.16 -3.04 16 16 C -0.13 -4.34 5.71 30.23 0.17 -4.17 16 17 C 0.19 7.99 4.67 86.49 0.40 8.40 16 18 N -0.59 -24.74 1.79 -675.33 -1.21 -25.94 16 19 C -0.23 -11.26 7.64 84.04 0.64 -10.62 16 20 H 0.04 2.22 6.73 -2.91 -0.02 2.20 16 21 C -0.01 -0.72 4.86 84.86 0.41 -0.31 16 22 N -0.91 -46.47 11.12 21.65 0.24 -46.22 16 23 Si 0.92 43.44 29.58 68.60 2.03 45.47 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 C -0.10 -3.19 5.10 30.59 0.16 -3.04 16 28 C -0.13 -3.54 5.54 30.59 0.17 -3.37 16 29 H 0.04 0.78 7.87 -2.39 -0.02 0.76 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 32 H 0.05 1.44 7.79 -2.39 -0.02 1.42 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 37 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.41 16.04 7.50 -92.71 -0.70 15.35 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.04 1.63 6.83 -2.39 -0.02 1.61 16 41 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 42 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.06 1.57 7.36 -2.39 -0.02 1.55 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.04 1.57 7.48 -2.39 -0.02 1.55 16 47 H 0.06 1.78 7.32 -2.39 -0.02 1.76 16 48 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.00 0.21 8.02 -2.39 -0.02 0.19 16 50 H 0.04 1.85 6.45 -2.39 -0.02 1.83 16 51 H 0.25 12.63 8.31 -92.70 -0.77 11.86 16 52 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 53 H 0.07 2.65 7.56 -2.39 -0.02 2.63 16 54 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 55 H 0.06 1.70 7.87 -2.39 -0.02 1.68 16 Total: -1.00 -57.06 410.88 2.60 -54.46 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.15 Total: 32.76 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.11 Total: 5.50 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -3.10 Total: -100.53 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.59 Total: -37.67 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -57.06 2.60 -54.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969007407.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.107 kcal (2) G-P(sol) polarization free energy of solvation -57.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds