Wall clock time and date at job start Tue Mar 31 2020 22:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99964 * 2 1 4 4 H 1.09005 * 109.46866 * 29.99671 * 3 2 1 5 5 C 1.53004 * 109.47216 * 270.00506 * 3 2 1 6 6 C 1.52995 * 109.46982 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47220 * 59.99670 * 6 5 3 8 8 C 1.52997 * 109.47357 * 299.99584 * 7 6 5 9 9 H 1.08994 * 109.47191 * 300.00219 * 8 7 6 10 10 C 1.52996 * 109.47357 * 179.97438 * 8 7 6 11 11 C 1.50705 * 109.47146 * 65.00433 * 10 8 7 12 12 O 1.21282 * 119.99443 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00065 * 180.02562 * 11 10 8 14 14 C 1.46923 * 120.63220 * 359.72035 * 13 11 10 15 15 C 1.52763 * 109.00849 * 233.58644 * 14 13 11 16 16 C 1.53043 * 109.38155 * 305.58920 * 15 14 13 17 17 N 1.46497 * 109.44835 * 181.25473 * 16 15 14 18 18 C 1.46500 * 119.99910 * 299.93231 * 17 16 15 19 19 C 1.36937 * 119.99927 * 119.93658 * 17 16 15 20 20 H 1.08002 * 120.00011 * 22.06482 * 19 17 16 21 21 C 1.38817 * 119.99958 * 202.06023 * 19 17 16 22 22 N 1.31621 * 119.99829 * 12.42615 * 21 19 17 23 23 Si 1.86799 * 119.99921 * 192.42360 * 21 19 17 24 24 H 1.48501 * 109.47410 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46996 * 120.00274 * 23 21 19 26 26 H 1.48504 * 109.46882 * 240.00255 * 23 21 19 27 27 C 1.53042 * 109.53900 * 61.23766 * 16 15 14 28 28 C 1.46923 * 120.62929 * 179.97438 * 13 11 10 29 29 C 1.52993 * 109.47317 * 149.99824 * 3 2 1 30 30 H 1.09001 * 109.47433 * 59.99899 * 1 2 3 31 31 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47039 * 299.99533 * 1 2 3 33 33 H 1.08991 * 109.47379 * 59.99331 * 5 3 2 34 34 H 1.09005 * 109.46521 * 299.99376 * 5 3 2 35 35 H 1.09001 * 109.46851 * 179.97438 * 6 5 3 36 36 H 1.09004 * 109.47294 * 299.99513 * 6 5 3 37 37 H 1.08997 * 109.47577 * 60.00458 * 7 6 5 38 38 H 1.09007 * 109.46879 * 179.97438 * 7 6 5 39 39 H 1.09005 * 109.47147 * 184.99902 * 10 8 7 40 40 H 1.08996 * 109.47673 * 305.00694 * 10 8 7 41 41 H 1.09003 * 109.58177 * 353.41707 * 14 13 11 42 42 H 1.09000 * 109.58727 * 113.84209 * 14 13 11 43 43 H 1.08993 * 109.56726 * 185.55335 * 15 14 13 44 44 H 1.09004 * 109.38756 * 65.51132 * 15 14 13 45 45 H 1.09005 * 109.45644 * 301.21811 * 16 15 14 46 46 H 1.09003 * 109.46857 * 94.30737 * 18 17 16 47 47 H 1.09000 * 109.47251 * 214.30244 * 18 17 16 48 48 H 1.08997 * 109.47327 * 334.30464 * 18 17 16 49 49 H 0.96995 * 119.99740 * 179.97438 * 22 21 19 50 50 H 1.09006 * 109.49589 * 178.68548 * 27 16 15 51 51 H 1.08999 * 109.52424 * 58.60566 * 27 16 15 52 52 H 1.08997 * 109.58597 * 246.15836 * 28 13 11 53 53 H 1.09006 * 109.58765 * 6.43796 * 28 13 11 54 54 H 1.09004 * 109.46760 * 60.00012 * 29 3 2 55 55 H 1.09001 * 109.47438 * 300.00268 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2175 1.7715 -1.4425 6 6 2.8404 3.1689 -1.4425 7 6 4.1891 3.1261 -0.7214 8 6 3.9818 2.6602 0.7210 9 1 3.3169 3.3543 1.2350 10 6 5.3306 2.6168 1.4419 11 6 5.8875 4.0130 1.5501 12 8 5.2668 4.9503 1.0950 13 7 7.0757 4.2198 2.1517 14 6 7.8368 3.0950 2.7122 15 6 8.1694 3.3976 4.1722 16 6 8.8849 4.7476 4.2608 17 7 9.2312 5.0254 5.6569 18 6 8.1759 5.1181 6.6688 19 6 10.5412 5.1985 6.0160 20 1 11.2714 5.4850 5.2735 21 6 10.9308 5.0059 7.3344 22 7 10.1104 4.4264 8.1850 23 14 12.6193 5.5690 7.9011 24 1 13.3435 6.1868 6.7614 25 1 12.4684 6.5668 8.9904 26 1 13.3881 4.4014 8.4023 27 6 7.9638 5.8507 3.7347 28 6 7.6319 5.5750 2.2643 29 6 3.3588 1.2634 0.7212 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.2568 1.8015 -1.9563 34 1 2.8829 1.0776 -1.9563 35 1 2.9885 3.5007 -2.4701 36 1 2.1755 3.8631 -0.9285 37 1 4.8541 2.4321 -1.2354 38 1 4.6331 4.1217 -0.7218 39 1 5.1957 2.2011 2.4405 40 1 6.0237 1.9919 0.8787 41 1 7.2390 2.1853 2.6561 42 1 8.7610 2.9627 2.1496 43 1 8.8171 2.6158 4.5687 44 1 7.2476 3.4357 4.7528 45 1 9.7942 4.7166 3.6604 46 1 8.0510 4.1496 7.1532 47 1 8.4516 5.8642 7.4140 48 1 7.2399 5.4093 6.1921 49 1 10.3828 4.2915 9.1061 50 1 8.4653 6.8148 3.8197 51 1 7.0437 5.8664 4.3188 52 1 8.5390 5.6487 1.6646 53 1 6.8999 6.3010 1.9104 54 1 4.0241 0.5694 0.2074 55 1 3.2111 0.9314 1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985466419.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:02 Heat of formation + Delta-G solvation = -97.446788 kcal Electronic energy + Delta-G solvation = -30665.643920 eV Core-core repulsion = 26701.600624 eV Total energy + Delta-G solvation = -3964.043295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.41478 -40.14262 -38.96627 -37.44592 -36.62012 -34.04316 -33.43683 -32.01631 -31.46265 -31.01328 -28.29212 -28.03470 -27.29590 -26.16574 -24.13143 -23.79787 -23.34384 -22.45820 -21.08066 -20.73855 -19.60808 -18.75069 -18.09679 -17.40807 -16.96944 -16.86337 -16.52172 -16.45604 -16.01137 -15.73853 -15.55423 -15.13238 -15.07606 -14.99386 -14.59279 -14.50408 -14.30659 -13.87969 -13.86740 -13.72772 -13.20058 -13.18412 -13.12809 -12.89089 -12.78247 -12.71541 -12.62936 -12.44252 -12.34658 -12.14802 -12.01988 -11.92536 -11.91829 -11.81313 -11.63170 -11.44930 -11.34272 -11.26945 -11.19650 -10.62863 -10.54779 -10.36295 -9.58379 -8.76126 -7.80647 -5.27632 1.46126 1.48200 1.57799 1.70357 2.07575 2.51557 2.80874 3.32783 3.56858 3.66118 3.68792 3.76922 3.92687 4.09596 4.11342 4.15433 4.21218 4.23753 4.31582 4.35250 4.41790 4.51166 4.52087 4.53092 4.55322 4.61453 4.67236 4.69868 4.73191 4.77959 4.83264 4.86266 4.86611 4.88942 4.92864 5.03744 5.05849 5.09390 5.12628 5.24646 5.26439 5.27405 5.35124 5.42322 5.49416 5.51523 5.56105 5.62881 5.69196 5.73667 6.30689 6.34904 6.51470 7.17192 7.25334 7.90404 8.34696 9.22772 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.002068 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.372198 B =13534.495155 C =14168.254808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.087 3.913 4 H 0.059 0.941 5 C -0.134 4.134 6 C -0.112 4.112 7 C -0.119 4.119 8 C -0.061 4.061 9 H 0.060 0.940 10 C -0.132 4.132 11 C 0.511 3.489 12 O -0.578 6.578 13 N -0.610 5.610 14 C 0.117 3.883 15 C -0.136 4.136 16 C 0.173 3.827 17 N -0.612 5.612 18 C 0.184 3.816 19 C -0.256 4.256 20 H 0.073 0.927 21 C -0.057 4.057 22 N -0.940 5.940 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.295 1.295 26 H -0.293 1.293 27 C -0.132 4.132 28 C 0.123 3.877 29 C -0.106 4.106 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.003 0.997 47 H 0.011 0.989 48 H 0.021 0.979 49 H 0.246 0.754 50 H 0.064 0.936 51 H 0.046 0.954 52 H 0.079 0.921 53 H 0.079 0.921 54 H 0.078 0.922 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.717 -8.059 -19.993 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.030 3.970 4 H 0.077 0.923 5 C -0.171 4.171 6 C -0.149 4.149 7 C -0.156 4.156 8 C -0.080 4.080 9 H 0.079 0.921 10 C -0.171 4.171 11 C 0.302 3.698 12 O -0.459 6.459 13 N -0.343 5.343 14 C -0.006 4.006 15 C -0.176 4.176 16 C 0.066 3.934 17 N -0.335 5.335 18 C 0.039 3.961 19 C -0.387 4.387 20 H 0.090 0.910 21 C -0.251 4.251 22 N -0.587 5.587 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.223 1.223 26 H -0.220 1.220 27 C -0.173 4.173 28 C -0.001 4.001 29 C -0.143 4.143 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.021 0.979 47 H 0.030 0.970 48 H 0.039 0.961 49 H 0.055 0.945 50 H 0.082 0.918 51 H 0.064 0.936 52 H 0.097 0.903 53 H 0.098 0.902 54 H 0.096 0.904 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.885 -7.758 -20.065 26.742 hybrid contribution 0.709 0.722 1.200 1.570 sum -15.176 -7.035 -18.865 25.213 Atomic orbital electron populations 1.22935 0.80046 1.03633 1.00516 1.87867 1.20953 1.28532 1.95221 1.22169 0.94959 0.83964 0.95908 0.92308 1.21982 1.01409 0.97065 0.96685 1.21423 0.96511 0.96176 1.00812 1.21685 0.97539 1.01899 0.94492 1.20745 0.94852 0.96093 0.96311 0.92108 1.21805 0.98299 0.92923 1.04112 1.21201 0.79748 0.92398 0.76467 1.90624 1.59553 1.45969 1.49704 1.48287 1.20516 1.08601 1.56846 1.21790 0.97274 0.88921 0.92571 1.22229 1.00124 0.98847 0.96448 1.20523 0.95793 0.92449 0.84632 1.44197 1.02797 1.82670 1.03793 1.20392 0.88004 0.97651 0.90063 1.19608 0.86315 1.38649 0.94085 0.90972 1.25757 1.01187 1.00363 0.97836 1.70241 1.37392 1.46867 1.04205 0.85206 0.80152 0.77138 0.77977 1.18986 1.22269 1.21972 1.22273 0.99593 0.99904 0.95483 1.21474 0.99014 0.83983 0.95589 1.21570 0.95224 0.96467 1.01082 0.93389 0.88584 0.93637 0.91541 0.91215 0.91132 0.92586 0.91501 0.91960 0.87402 0.86407 0.87104 0.89678 0.91937 0.93486 0.91936 0.97901 0.97003 0.96069 0.94463 0.91761 0.93567 0.90278 0.90224 0.90375 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -7.28 10.35 -148.98 -1.54 -8.82 16 3 C 0.09 1.41 2.61 30.59 0.08 1.49 16 4 H 0.06 0.94 7.79 -2.38 -0.02 0.93 16 5 C -0.13 -1.97 5.54 30.59 0.17 -1.80 16 6 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 7 C -0.12 -2.17 4.94 30.59 0.15 -2.02 16 8 C -0.06 -1.08 1.84 -10.81 -0.02 -1.10 16 9 H 0.06 1.32 7.96 -2.39 -0.02 1.30 16 10 C -0.13 -2.27 3.52 29.85 0.11 -2.16 16 11 C 0.51 12.78 7.42 87.66 0.65 13.43 16 12 O -0.58 -18.21 13.38 -3.04 -0.04 -18.25 16 13 N -0.61 -15.26 2.98 -819.65 -2.44 -17.70 16 14 C 0.12 2.58 6.31 86.22 0.54 3.12 16 15 C -0.14 -4.33 5.32 30.53 0.16 -4.17 16 16 C 0.17 6.49 2.55 45.02 0.11 6.60 16 17 N -0.61 -29.82 2.81 -702.61 -1.98 -31.80 16 18 C 0.18 9.17 8.03 127.77 1.03 10.19 16 19 C -0.26 -13.77 9.60 84.03 0.81 -12.96 16 20 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 21 C -0.06 -3.16 5.11 84.86 0.43 -2.72 16 22 N -0.94 -55.41 10.63 21.65 0.23 -55.18 16 23 Si 0.97 44.81 29.57 68.60 2.03 46.84 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 27 C -0.13 -4.40 5.32 30.69 0.16 -4.24 16 28 C 0.12 3.37 6.44 86.38 0.56 3.92 16 29 C -0.11 -1.65 4.85 30.58 0.15 -1.50 16 30 H 0.05 0.49 7.87 -2.39 -0.02 0.48 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 0.50 8.08 -2.39 -0.02 0.48 16 33 H 0.07 0.88 7.87 -2.39 -0.02 0.87 16 34 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.47 5.95 -2.38 -0.01 1.46 16 39 H 0.11 1.63 7.68 -2.38 -0.02 1.61 16 40 H 0.12 1.49 7.95 -2.39 -0.02 1.47 16 41 H 0.11 1.78 5.93 -2.39 -0.01 1.76 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.05 1.61 7.72 -2.38 -0.02 1.59 16 45 H 0.06 2.34 7.86 -2.38 -0.02 2.32 16 46 H 0.00 0.15 7.41 -2.39 -0.02 0.13 16 47 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 48 H 0.02 0.92 6.46 -2.39 -0.02 0.91 16 49 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 50 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 51 H 0.05 1.66 6.72 -2.39 -0.02 1.64 16 52 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 53 H 0.08 2.32 7.00 -2.38 -0.02 2.31 16 54 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 55 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -67.38 410.33 3.59 -63.79 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.83 Total: 15.10 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.50 Total: 6.02 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -4.19 Total: -104.68 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.58 Total: -27.07 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.38 3.59 -63.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985466419.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.655 kcal (2) G-P(sol) polarization free energy of solvation -67.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds