Wall clock time and date at job start Tue Mar 31 2020 22:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00136 * 2 1 4 4 H 1.09003 * 109.47310 * 329.99809 * 3 2 1 5 5 C 1.53003 * 109.47355 * 89.99848 * 3 2 1 6 6 C 1.52992 * 109.47087 * 59.99704 * 5 3 2 7 7 C 1.53005 * 109.46793 * 60.00338 * 6 5 3 8 8 C 1.52996 * 109.47139 * 299.99944 * 7 6 5 9 9 H 1.09005 * 109.46907 * 300.00012 * 8 7 6 10 10 C 1.52996 * 109.47032 * 180.02562 * 8 7 6 11 11 C 1.50708 * 109.47464 * 64.99863 * 10 8 7 12 12 O 1.21277 * 119.99539 * 0.02562 * 11 10 8 13 13 N 1.34772 * 120.00034 * 179.97438 * 11 10 8 14 14 C 1.46930 * 120.62847 * 179.97438 * 13 11 10 15 15 C 1.53189 * 108.89522 * 233.56377 * 14 13 11 16 16 C 1.53071 * 109.29364 * 305.57921 * 15 14 13 17 17 N 1.46503 * 109.45541 * 181.24252 * 16 15 14 18 18 C 1.46506 * 119.99864 * 299.79540 * 17 16 15 19 19 C 1.36936 * 120.00493 * 119.78405 * 17 16 15 20 20 H 1.08005 * 119.99458 * 20.40468 * 19 17 16 21 21 C 1.38803 * 120.00553 * 200.40511 * 19 17 16 22 22 N 1.31616 * 119.99929 * 14.98046 * 21 19 17 23 23 Si 1.86797 * 120.00319 * 194.97916 * 21 19 17 24 24 H 1.48500 * 109.47018 * 85.00161 * 23 21 19 25 25 H 1.48497 * 109.47568 * 205.00384 * 23 21 19 26 26 H 1.48507 * 109.47090 * 325.00470 * 23 21 19 27 27 C 1.53037 * 109.65872 * 61.15417 * 16 15 14 28 28 C 1.46924 * 120.63538 * 0.02563 * 13 11 10 29 29 C 1.52990 * 109.47320 * 59.99777 * 8 7 6 30 30 H 1.08998 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47478 * 300.00273 * 1 2 3 32 32 H 1.09001 * 109.47042 * 60.00195 * 1 2 3 33 33 H 1.09003 * 109.46587 * 299.99947 * 5 3 2 34 34 H 1.09001 * 109.47561 * 180.02562 * 5 3 2 35 35 H 1.08992 * 109.47558 * 300.00490 * 6 5 3 36 36 H 1.09003 * 109.47193 * 179.97438 * 6 5 3 37 37 H 1.09002 * 109.46935 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.46801 * 59.99981 * 7 6 5 39 39 H 1.08997 * 109.47197 * 304.99731 * 10 8 7 40 40 H 1.09005 * 109.47286 * 184.99834 * 10 8 7 41 41 H 1.09005 * 109.58625 * 353.42189 * 14 13 11 42 42 H 1.08999 * 109.58264 * 113.70278 * 14 13 11 43 43 H 1.09000 * 109.50059 * 65.39055 * 15 14 13 44 44 H 1.08999 * 109.49528 * 185.48684 * 15 14 13 45 45 H 1.08997 * 109.35043 * 301.12824 * 16 15 14 46 46 H 1.09000 * 109.47210 * 95.10341 * 18 17 16 47 47 H 1.09000 * 109.46470 * 215.10640 * 18 17 16 48 48 H 1.08996 * 109.47099 * 335.10199 * 18 17 16 49 49 H 0.97003 * 120.00432 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.49929 * 178.74576 * 27 16 15 51 51 H 1.08999 * 109.52670 * 58.67026 * 27 16 15 52 52 H 1.08993 * 109.59002 * 246.15506 * 28 13 11 53 53 H 1.09007 * 109.58070 * 6.43903 * 28 13 11 54 54 H 1.09005 * 109.46939 * 60.00254 * 29 8 7 55 55 H 1.09001 * 109.47424 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.1513 0.7974 2.1638 7 6 4.5000 0.7552 1.4425 8 6 4.2926 0.2893 0.0001 9 1 3.8493 -0.7065 0.0001 10 6 5.6414 0.2465 -0.7209 11 6 6.5178 -0.8020 -0.0854 12 8 6.1041 -1.4514 0.8516 13 7 7.7608 -1.0187 -0.5590 14 6 8.6271 -2.0370 0.0504 15 6 9.9622 -1.3893 0.4309 16 6 10.5614 -0.7050 -0.8002 17 7 11.8527 -0.1097 -0.4475 18 6 11.9255 0.9176 0.5946 19 6 12.9917 -0.5134 -1.0915 20 1 12.9244 -1.0017 -2.0525 21 6 14.2328 -0.2951 -0.5095 22 7 14.3151 0.0216 0.7654 23 14 15.7860 -0.4507 -1.5354 24 1 16.0474 0.8326 -2.2355 25 1 16.9336 -0.7743 -0.6502 26 1 15.6119 -1.5340 -2.5361 27 6 9.6129 0.3900 -1.2935 28 6 8.2758 -0.2405 -1.6938 29 6 3.3589 1.2632 -0.7212 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.2568 1.8015 1.9563 34 1 2.6606 2.7673 1.4425 35 1 2.7080 -0.1983 2.1638 36 1 3.2995 1.1296 3.1913 37 1 5.1654 0.0616 1.9567 38 1 4.9434 1.7510 1.4426 39 1 6.1255 1.2200 -0.6440 40 1 5.4843 0.0007 -1.7712 41 1 8.1476 -2.4376 0.9436 42 1 8.8019 -2.8424 -0.6629 43 1 9.7971 -0.6477 1.2126 44 1 10.6476 -2.1550 0.7941 45 1 10.7056 -1.4431 -1.5893 46 1 12.1760 0.4514 1.5474 47 1 12.6930 1.6461 0.3334 48 1 10.9615 1.4194 0.6779 49 1 15.1824 0.1738 1.1723 50 1 10.0522 0.8902 -2.1566 51 1 9.4488 1.1157 -0.4970 52 1 8.4240 -0.8978 -2.5505 53 1 7.5633 0.5427 -1.9531 54 1 3.8023 2.2590 -0.7212 55 1 3.2115 0.9315 -1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985466420.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:07 Heat of formation + Delta-G solvation = -95.604250 kcal Electronic energy + Delta-G solvation = -30948.727576 eV Core-core repulsion = 26984.764179 eV Total energy + Delta-G solvation = -3963.963397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.39783 -40.19014 -38.93818 -37.11175 -36.58355 -34.02076 -33.38417 -32.01216 -31.42367 -31.09141 -28.28912 -28.02981 -27.28116 -26.14964 -24.13265 -23.81381 -23.42233 -22.44890 -21.02288 -20.46178 -19.62308 -18.74851 -18.10193 -17.06451 -17.05597 -16.84626 -16.55692 -16.35786 -16.09970 -15.73675 -15.63828 -15.17614 -15.03457 -14.89407 -14.56044 -14.39360 -14.25552 -13.85399 -13.76561 -13.41558 -13.26195 -13.17808 -13.14799 -12.92746 -12.75856 -12.67508 -12.63001 -12.48902 -12.32638 -12.18433 -12.11289 -12.05502 -11.85214 -11.78947 -11.60277 -11.39956 -11.23379 -11.15823 -11.07905 -10.60708 -10.45175 -10.30312 -9.57492 -8.78376 -7.80188 -5.26018 1.47651 1.48885 1.56968 1.73130 2.10505 2.52434 2.99030 3.32375 3.55900 3.65941 3.74749 3.86337 3.92480 3.99396 4.15856 4.21999 4.23206 4.30901 4.33338 4.41658 4.44628 4.50718 4.56749 4.59314 4.60235 4.65157 4.69446 4.74588 4.80853 4.83498 4.85300 4.87337 4.89717 4.92364 4.93475 5.02218 5.03253 5.10031 5.13751 5.26109 5.32017 5.36167 5.39769 5.42654 5.51872 5.54488 5.63330 5.67790 5.69920 5.73514 6.34118 6.42258 6.54338 7.16855 7.28733 7.90819 8.34638 9.23156 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.002091 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.977054 B =13384.997443 C =13481.520707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.085 3.915 4 H 0.079 0.921 5 C -0.137 4.137 6 C -0.109 4.109 7 C -0.118 4.118 8 C -0.059 4.059 9 H 0.054 0.946 10 C -0.131 4.131 11 C 0.507 3.493 12 O -0.583 6.583 13 N -0.611 5.611 14 C 0.123 3.877 15 C -0.131 4.131 16 C 0.172 3.828 17 N -0.612 5.612 18 C 0.184 3.816 19 C -0.256 4.256 20 H 0.076 0.924 21 C -0.060 4.060 22 N -0.942 5.942 23 Si 0.968 3.032 24 H -0.285 1.285 25 H -0.300 1.300 26 H -0.268 1.268 27 C -0.136 4.136 28 C 0.115 3.885 29 C -0.107 4.107 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.040 0.960 44 H 0.048 0.952 45 H 0.062 0.938 46 H -0.005 1.005 47 H 0.014 0.986 48 H 0.027 0.973 49 H 0.246 0.754 50 H 0.078 0.922 51 H 0.053 0.947 52 H 0.085 0.915 53 H 0.117 0.883 54 H 0.096 0.904 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.947 5.359 -6.224 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.028 3.972 4 H 0.097 0.903 5 C -0.174 4.174 6 C -0.147 4.147 7 C -0.155 4.155 8 C -0.078 4.078 9 H 0.073 0.927 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.464 6.464 13 N -0.344 5.344 14 C 0.000 4.000 15 C -0.171 4.171 16 C 0.066 3.934 17 N -0.334 5.334 18 C 0.038 3.962 19 C -0.387 4.387 20 H 0.093 0.907 21 C -0.254 4.254 22 N -0.589 5.589 23 Si 0.797 3.203 24 H -0.212 1.212 25 H -0.227 1.227 26 H -0.192 1.192 27 C -0.175 4.175 28 C -0.007 4.007 29 C -0.145 4.145 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.013 0.987 47 H 0.033 0.967 48 H 0.045 0.955 49 H 0.055 0.945 50 H 0.097 0.903 51 H 0.072 0.928 52 H 0.103 0.897 53 H 0.135 0.865 54 H 0.114 0.886 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.899 4.884 -5.664 28.884 hybrid contribution 1.412 -0.209 0.454 1.498 sum -26.487 4.675 -5.210 27.396 Atomic orbital electron populations 1.22891 0.80510 1.03130 1.00550 1.87955 1.20477 1.28842 1.95119 1.22248 0.95091 0.84421 0.95466 0.90332 1.22023 0.99734 0.99520 0.96171 1.21328 0.95440 0.99424 0.98517 1.21646 0.97232 1.00697 0.95969 1.20700 0.93227 0.99624 0.94291 0.92717 1.21863 0.94972 0.98298 1.01872 1.21402 0.81725 0.84295 0.82789 1.90637 1.73883 1.51383 1.30454 1.48312 1.13937 1.38084 1.34022 1.21404 0.89371 0.90515 0.98726 1.22280 0.95698 0.99581 0.99544 1.20544 0.84597 0.93798 0.94489 1.44244 1.03071 1.42863 1.43201 1.20392 0.95103 0.90017 0.90643 1.19608 0.85110 1.34299 0.99638 0.90650 1.25758 1.00890 1.02437 0.96356 1.70269 1.23343 1.54321 1.11014 0.85257 0.79210 0.78017 0.77817 1.21215 1.22715 1.19233 1.22279 0.95268 0.98524 1.01467 1.21925 0.95204 0.95996 0.87576 1.21722 0.93155 1.00449 0.99135 0.89643 0.93726 0.92891 0.91723 0.89739 0.93561 0.92574 0.93427 0.91736 0.86896 0.86332 0.91021 0.90510 0.94147 0.93292 0.91996 0.98711 0.96716 0.95450 0.94528 0.90328 0.92848 0.89678 0.86465 0.88574 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 113.37 1.23 1.53 16 2 O -0.40 -7.43 9.00 -148.98 -1.34 -8.77 16 3 C 0.09 1.18 2.92 30.59 0.09 1.27 16 4 H 0.08 0.77 7.79 -2.39 -0.02 0.76 16 5 C -0.14 -1.97 5.63 30.59 0.17 -1.80 16 6 C -0.11 -2.21 5.78 30.59 0.18 -2.04 16 7 C -0.12 -2.62 4.94 30.59 0.15 -2.46 16 8 C -0.06 -1.16 1.69 -10.80 -0.02 -1.18 16 9 H 0.05 1.43 7.49 -2.38 -0.02 1.41 16 10 C -0.13 -2.29 3.52 29.85 0.11 -2.18 16 11 C 0.51 13.68 7.41 87.66 0.65 14.33 16 12 O -0.58 -20.57 13.38 -3.02 -0.04 -20.61 16 13 N -0.61 -16.09 2.97 -818.97 -2.44 -18.52 16 14 C 0.12 3.79 6.43 86.36 0.55 4.35 16 15 C -0.13 -4.85 5.36 30.68 0.16 -4.68 16 16 C 0.17 6.55 2.54 45.03 0.11 6.67 16 17 N -0.61 -29.96 2.81 -702.57 -1.98 -31.93 16 18 C 0.18 9.19 8.04 127.77 1.03 10.21 16 19 C -0.26 -13.82 9.61 84.03 0.81 -13.02 16 20 H 0.08 3.88 7.81 -2.91 -0.02 3.86 16 21 C -0.06 -3.36 5.06 84.86 0.43 -2.93 16 22 N -0.94 -56.57 10.67 21.65 0.23 -56.34 16 23 Si 0.97 45.05 29.58 68.60 2.03 47.08 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 C -0.14 -3.92 5.32 30.66 0.16 -3.76 16 28 C 0.12 2.39 6.34 86.35 0.55 2.94 16 29 C -0.11 -1.41 4.95 30.59 0.15 -1.26 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 0.47 7.87 -2.39 -0.02 0.45 16 32 H 0.05 0.47 8.09 -2.39 -0.02 0.46 16 33 H 0.06 0.85 7.87 -2.39 -0.02 0.84 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 1.12 7.68 -2.39 -0.02 1.10 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.41 5.95 -2.39 -0.01 1.39 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 1.55 7.69 -2.39 -0.02 1.54 16 40 H 0.12 1.46 7.94 -2.38 -0.02 1.44 16 41 H 0.07 2.41 7.01 -2.38 -0.02 2.39 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.62 7.72 -2.39 -0.02 1.60 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 2.35 7.85 -2.39 -0.02 2.33 16 46 H -0.01 -0.31 7.40 -2.39 -0.02 -0.32 16 47 H 0.01 0.77 7.22 -2.39 -0.02 0.76 16 48 H 0.03 1.17 6.46 -2.39 -0.02 1.16 16 49 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 50 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.05 1.65 6.72 -2.39 -0.02 1.63 16 52 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.12 1.60 5.93 -2.38 -0.01 1.58 16 54 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 55 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.97 408.31 3.81 -68.15 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.84 Total: 14.94 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.51 Total: 6.00 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -4.18 Total: -106.79 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.38 Total: -29.38 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.97 3.81 -68.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985466420.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.453 kcal (2) G-P(sol) polarization free energy of solvation -71.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds