Wall clock time and date at job start Tue Mar 31 2020 22:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00238 * 2 1 4 4 H 1.08998 * 109.46960 * 16.81810 * 3 2 1 5 5 C 1.50694 * 109.47520 * 136.82480 * 3 2 1 6 6 O 1.21287 * 120.00081 * 17.67410 * 5 3 2 7 7 N 1.34778 * 120.00276 * 197.95842 * 5 3 2 8 8 C 1.46924 * 120.62508 * 354.74933 * 7 5 3 9 9 C 1.52762 * 109.00751 * 233.58627 * 8 7 5 10 10 C 1.53042 * 109.38440 * 305.58988 * 9 8 7 11 11 N 1.46500 * 109.45238 * 181.25281 * 10 9 8 12 12 C 1.46498 * 119.99790 * 299.93847 * 11 10 9 13 13 C 1.36930 * 119.99961 * 119.93924 * 11 10 9 14 14 H 1.07996 * 120.00531 * 28.99121 * 13 11 10 15 15 C 1.38822 * 120.00041 * 208.99275 * 13 11 10 16 16 N 1.31618 * 119.99463 * 8.24303 * 15 13 11 17 17 Si 1.86794 * 120.00191 * 188.23999 * 15 13 11 18 18 H 1.48509 * 109.47112 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47249 * 119.99829 * 17 15 13 20 20 H 1.48494 * 109.47325 * 239.99976 * 17 15 13 21 21 C 1.53043 * 109.53643 * 61.23678 * 10 9 8 22 22 C 1.46920 * 120.63447 * 175.03280 * 7 5 3 23 23 C 1.53003 * 109.46859 * 256.82506 * 3 2 1 24 24 C 1.52996 * 109.47273 * 64.98541 * 23 3 2 25 25 C 1.53003 * 109.47273 * 179.97438 * 24 23 3 26 26 C 1.52996 * 109.47020 * 59.99714 * 25 24 23 27 27 C 1.53003 * 109.47599 * 300.00326 * 26 25 24 28 28 C 1.52998 * 109.46935 * 304.98636 * 23 3 2 29 29 H 1.08992 * 109.47320 * 184.18954 * 1 2 3 30 30 H 1.09007 * 109.47110 * 304.19830 * 1 2 3 31 31 H 1.09005 * 109.46608 * 64.18884 * 1 2 3 32 32 H 1.08996 * 109.59199 * 353.41522 * 8 7 5 33 33 H 1.08999 * 109.58997 * 113.84950 * 8 7 5 34 34 H 1.09002 * 109.56680 * 185.55474 * 9 8 7 35 35 H 1.09005 * 109.36015 * 65.49876 * 9 8 7 36 36 H 1.09005 * 109.46177 * 301.21976 * 10 9 8 37 37 H 1.09007 * 109.47210 * 85.49666 * 12 11 10 38 38 H 1.09006 * 109.47055 * 205.49527 * 12 11 10 39 39 H 1.09002 * 109.47492 * 325.49705 * 12 11 10 40 40 H 0.97001 * 119.99455 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.49720 * 178.68307 * 21 10 9 42 42 H 1.09004 * 109.49729 * 58.59356 * 21 10 9 43 43 H 1.09001 * 109.58506 * 246.15403 * 22 7 5 44 44 H 1.08998 * 109.58447 * 6.43322 * 22 7 5 45 45 H 1.09003 * 109.47244 * 184.98761 * 23 3 2 46 46 H 1.09001 * 109.47424 * 299.99793 * 24 23 3 47 47 H 1.08998 * 109.47135 * 60.00215 * 24 23 3 48 48 H 1.09003 * 109.47244 * 300.00220 * 25 24 23 49 49 H 1.08994 * 109.47546 * 180.02562 * 25 24 23 50 50 H 1.09002 * 109.47411 * 180.02562 * 26 25 24 51 51 H 1.09001 * 109.46957 * 60.00648 * 26 25 24 52 52 H 1.08996 * 109.46377 * 299.99966 * 27 26 25 53 53 H 1.08998 * 109.47402 * 179.97438 * 27 26 25 54 54 H 1.09003 * 109.47478 * 299.99670 * 28 23 3 55 55 H 1.08992 * 109.47390 * 60.00327 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2594 2.0375 0.2973 5 6 3.1612 1.3430 0.9721 6 8 3.6621 0.3084 1.3591 7 7 3.6301 2.5260 1.4160 8 6 3.1077 3.7885 0.8757 9 6 4.2762 4.6398 0.3822 10 6 5.2923 4.8124 1.5135 11 7 6.3991 5.6535 1.0511 12 6 7.2119 5.2310 -0.0922 13 6 6.6739 6.8344 1.6874 14 1 6.4455 6.9483 2.7368 15 6 7.2460 7.8854 0.9837 16 7 7.3753 7.8085 -0.3239 17 14 7.8322 9.4085 1.8924 18 1 7.5754 9.2471 3.3462 19 1 9.2882 9.5911 1.6647 20 1 7.0995 10.5979 1.3889 21 6 5.8325 3.4423 1.9298 22 6 4.6777 2.5776 2.4448 23 6 2.5181 1.6376 -1.4046 24 6 1.3331 1.7218 -2.3687 25 6 1.8408 2.0545 -3.7731 26 6 2.8018 0.9597 -4.2406 27 6 3.9869 0.8754 -3.2765 28 6 3.4787 0.5422 -1.8718 29 1 -0.3633 -1.0248 0.0751 30 1 -0.3634 0.5776 0.8500 31 1 -0.3633 0.4475 -0.9252 32 1 2.4335 3.5795 0.0452 33 1 2.5719 4.3267 1.6576 34 1 3.9093 5.6177 0.0704 35 1 4.7534 4.1433 -0.4628 36 1 4.8082 5.2866 2.3673 37 1 6.7313 5.5496 -1.0173 38 1 8.2010 5.6839 -0.0220 39 1 7.3084 4.1453 -0.0881 40 1 7.7747 8.5431 -0.8157 41 1 6.5733 3.5679 2.7194 42 1 6.2951 2.9572 1.0703 43 1 4.2724 3.0150 3.3573 44 1 5.0371 1.5695 2.6512 45 1 3.0398 2.5945 -1.3856 46 1 0.8114 0.7649 -2.3878 47 1 0.6487 2.5021 -2.0358 48 1 2.3622 3.0116 -3.7537 49 1 0.9966 2.1150 -4.4599 50 1 3.1640 1.1969 -5.2410 51 1 2.2805 0.0027 -4.2601 52 1 4.5082 1.8325 -3.2572 53 1 4.6713 0.0951 -3.6094 54 1 4.3231 0.4822 -1.1850 55 1 2.9572 -0.4146 -1.8909 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985821475.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:19 Heat of formation + Delta-G solvation = -92.063922 kcal Electronic energy + Delta-G solvation = -32387.514819 eV Core-core repulsion = 28423.704942 eV Total energy + Delta-G solvation = -3963.809877 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78560 -39.87575 -38.78366 -37.86275 -36.68039 -34.08578 -33.10967 -31.85472 -31.66952 -31.46859 -28.64185 -28.00831 -26.98394 -26.02445 -24.09318 -23.92743 -23.42712 -22.58864 -21.30110 -20.66659 -19.75066 -18.75355 -18.34509 -17.58463 -17.17884 -16.99143 -16.62857 -15.90737 -15.80674 -15.65997 -15.45752 -15.18193 -15.07310 -15.01925 -14.78450 -14.63376 -14.32259 -14.11806 -13.82109 -13.75191 -13.24926 -13.14446 -13.10206 -13.04274 -12.80638 -12.77311 -12.66680 -12.45028 -12.36195 -12.18791 -12.03390 -12.00539 -11.89074 -11.84451 -11.60259 -11.46407 -11.27521 -11.20173 -11.10158 -10.79534 -10.60258 -10.24220 -9.67537 -8.66728 -7.82922 -5.34327 1.46748 1.48934 1.52560 1.58504 1.79875 2.51320 2.90285 3.32876 3.39930 3.59092 3.63086 3.74941 3.87026 3.88374 4.01584 4.09937 4.17976 4.27592 4.32258 4.36044 4.38140 4.38972 4.53573 4.54981 4.57328 4.58490 4.64707 4.66486 4.71734 4.74363 4.81617 4.83305 4.87828 4.92255 4.99949 5.00962 5.08632 5.15726 5.22495 5.23339 5.28564 5.30253 5.37675 5.37769 5.40977 5.49784 5.57908 5.59583 5.68196 5.68681 6.09249 6.38692 6.41709 7.13534 7.18135 7.88885 8.37192 9.21897 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.003244 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.171270 B = 8630.253039 C = 9600.765739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.380 6.380 3 C 0.084 3.916 4 H 0.112 0.888 5 C 0.509 3.491 6 O -0.571 6.571 7 N -0.604 5.604 8 C 0.111 3.889 9 C -0.132 4.132 10 C 0.174 3.826 11 N -0.609 5.609 12 C 0.184 3.816 13 C -0.263 4.263 14 H 0.069 0.931 15 C -0.047 4.047 16 N -0.936 5.936 17 Si 0.965 3.035 18 H -0.265 1.265 19 H -0.295 1.295 20 H -0.291 1.291 21 C -0.132 4.132 22 C 0.122 3.878 23 C -0.098 4.098 24 C -0.109 4.109 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.101 4.101 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.065 0.935 37 H -0.004 1.004 38 H 0.020 0.980 39 H 0.014 0.986 40 H 0.247 0.753 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.051 0.949 53 H 0.059 0.941 54 H 0.028 0.972 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.600 -12.686 -3.709 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.298 6.298 3 C 0.023 3.977 4 H 0.130 0.870 5 C 0.297 3.703 6 O -0.450 6.450 7 N -0.338 5.338 8 C -0.011 4.011 9 C -0.173 4.173 10 C 0.068 3.932 11 N -0.331 5.331 12 C 0.038 3.962 13 C -0.393 4.393 14 H 0.087 0.913 15 C -0.242 4.242 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.190 1.190 19 H -0.222 1.222 20 H -0.218 1.218 21 C -0.172 4.172 22 C -0.001 4.001 23 C -0.117 4.117 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.153 4.153 27 C -0.158 4.158 28 C -0.139 4.139 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.014 0.986 38 H 0.039 0.961 39 H 0.032 0.968 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.098 0.902 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.069 0.931 53 H 0.078 0.922 54 H 0.047 0.953 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.158 -13.288 -3.596 21.998 hybrid contribution 1.046 1.195 0.238 1.606 sum -16.112 -12.093 -3.358 20.423 Atomic orbital electron populations 1.23237 0.79018 1.04137 1.01588 1.88009 1.21549 1.25473 1.94785 1.22074 0.94040 0.87497 0.94093 0.86998 1.21156 0.84961 0.82834 0.81332 1.90652 1.60696 1.34037 1.59621 1.48215 1.39282 1.06073 1.40274 1.21922 0.95876 0.83188 1.00159 1.22179 0.96651 0.99335 0.99094 1.20508 0.87655 0.89731 0.95352 1.44087 1.32611 1.21060 1.35350 1.20359 0.94008 0.92687 0.89106 1.19554 1.37065 0.90063 0.92643 0.91321 1.25870 1.02248 1.00219 0.95886 1.70195 1.48922 1.32538 1.06570 0.85230 0.77029 0.79729 0.78608 1.18970 1.22245 1.21756 1.22253 0.97762 0.96631 1.00587 1.21532 0.87572 1.00569 0.90416 1.21645 0.98132 0.99366 0.92536 1.21642 0.95963 1.02832 0.94185 1.21531 0.99345 0.98395 0.96327 1.21514 0.95895 0.99590 0.98285 1.21550 0.98312 1.01067 0.94831 1.21341 0.97573 0.98861 0.96094 0.88577 0.92971 0.91594 0.87723 0.88967 0.91660 0.93699 0.91645 0.98573 0.96064 0.96804 0.94342 0.91454 0.93822 0.89523 0.90513 0.90086 0.90754 0.89945 0.92433 0.90182 0.91503 0.91559 0.93054 0.92220 0.95348 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.43 113.37 1.18 1.40 16 2 O -0.38 -8.86 8.78 -130.57 -1.15 -10.01 16 3 C 0.08 1.83 1.50 29.85 0.04 1.88 16 4 H 0.11 1.75 6.67 -2.39 -0.02 1.73 16 5 C 0.51 14.97 6.01 87.65 0.53 15.50 16 6 O -0.57 -21.68 15.85 15.36 0.24 -21.43 16 7 N -0.60 -16.45 2.98 -819.77 -2.44 -18.89 16 8 C 0.11 2.58 5.64 86.22 0.49 3.06 16 9 C -0.13 -4.29 5.32 30.53 0.16 -4.13 16 10 C 0.17 6.60 2.56 45.02 0.12 6.71 16 11 N -0.61 -29.60 2.79 -702.60 -1.96 -31.56 16 12 C 0.18 9.15 8.10 127.77 1.03 10.19 16 13 C -0.26 -14.02 9.51 84.04 0.80 -13.22 16 14 H 0.07 3.55 7.84 -2.91 -0.02 3.53 16 15 C -0.05 -2.56 5.12 84.86 0.43 -2.13 16 16 N -0.94 -54.53 10.89 21.65 0.24 -54.29 16 17 Si 0.97 44.16 29.56 68.60 2.03 46.19 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 21 C -0.13 -4.51 5.30 30.67 0.16 -4.35 16 22 C 0.12 3.53 6.44 86.36 0.56 4.08 16 23 C -0.10 -2.01 1.62 -10.79 -0.02 -2.03 16 24 C -0.11 -1.60 4.44 30.59 0.14 -1.46 16 25 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 26 C -0.12 -1.95 5.92 30.59 0.18 -1.77 16 27 C -0.12 -2.62 5.93 30.61 0.18 -2.44 16 28 C -0.10 -2.52 4.82 30.61 0.15 -2.37 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 0.61 8.04 -2.38 -0.02 0.59 16 31 H 0.07 0.65 6.12 -2.38 -0.01 0.64 16 32 H 0.10 1.90 4.52 -2.39 -0.01 1.89 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.04 1.59 7.72 -2.38 -0.02 1.57 16 36 H 0.07 2.44 7.89 -2.38 -0.02 2.42 16 37 H 0.00 -0.22 7.77 -2.38 -0.02 -0.23 16 38 H 0.02 1.14 6.98 -2.38 -0.02 1.13 16 39 H 0.01 0.62 6.47 -2.39 -0.02 0.60 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.04 1.63 6.75 -2.38 -0.02 1.62 16 43 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.08 2.40 7.00 -2.39 -0.02 2.39 16 45 H 0.08 1.80 6.33 -2.39 -0.02 1.79 16 46 H 0.07 1.04 6.29 -2.39 -0.02 1.03 16 47 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 53 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 54 H 0.03 0.88 7.25 -2.39 -0.02 0.87 16 55 H 0.06 1.69 7.56 -2.39 -0.02 1.67 16 Total: -1.00 -69.64 403.97 4.12 -65.52 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.85 Total: 17.15 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 6.32 Total: 7.32 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -4.17 Total: -104.74 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.90 Total: -31.44 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -69.64 4.12 -65.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985821475.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.545 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds