Wall clock time and date at job start Tue Mar 31 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99923 * 2 1 4 4 H 1.08995 * 109.46992 * 30.00761 * 3 2 1 5 5 C 1.52994 * 109.47497 * 270.00198 * 3 2 1 6 6 C 1.53003 * 109.47172 * 180.02562 * 5 3 2 7 7 C 1.52990 * 109.47316 * 59.99904 * 6 5 3 8 8 C 1.53003 * 109.47458 * 300.00316 * 7 6 5 9 9 H 1.09000 * 109.46720 * 299.99685 * 8 7 6 10 10 C 1.53005 * 109.47319 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.46899 * 65.00114 * 10 8 7 12 12 O 1.21287 * 120.00147 * 359.97438 * 11 10 8 13 13 N 1.34769 * 120.00192 * 180.02562 * 11 10 8 14 14 C 1.46504 * 119.99870 * 359.97438 * 13 11 10 15 15 C 1.46501 * 120.00782 * 179.97438 * 13 11 10 16 16 C 1.53036 * 109.46441 * 240.03156 * 15 13 11 17 17 C 1.53194 * 109.31324 * 178.59783 * 16 15 13 18 18 N 1.46922 * 108.76282 * 54.65359 * 17 16 15 19 19 C 1.36936 * 120.63017 * 126.40863 * 18 17 16 20 20 H 1.08002 * 120.00140 * 332.60066 * 19 18 17 21 21 C 1.38819 * 119.99824 * 152.60382 * 19 18 17 22 22 N 1.31621 * 119.99540 * 159.34746 * 21 19 18 23 23 Si 1.86793 * 120.00233 * 339.34331 * 21 19 18 24 24 H 1.48494 * 109.47378 * 92.94274 * 23 21 19 25 25 H 1.48499 * 109.46906 * 212.94458 * 23 21 19 26 26 H 1.48499 * 109.47130 * 332.93950 * 23 21 19 27 27 C 1.46923 * 118.73988 * 306.37943 * 18 17 16 28 28 C 1.53043 * 109.46181 * 119.96851 * 15 13 11 29 29 C 1.53002 * 109.46833 * 59.99816 * 8 7 6 30 30 H 1.08996 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46678 * 299.99696 * 1 2 3 32 32 H 1.09002 * 109.47127 * 59.99267 * 1 2 3 33 33 H 1.08998 * 109.47335 * 60.00472 * 5 3 2 34 34 H 1.08995 * 109.47460 * 300.00276 * 5 3 2 35 35 H 1.09009 * 109.46994 * 300.00182 * 6 5 3 36 36 H 1.08998 * 109.47069 * 180.02562 * 6 5 3 37 37 H 1.09003 * 109.47370 * 180.02562 * 7 6 5 38 38 H 1.09008 * 109.47379 * 60.00295 * 7 6 5 39 39 H 1.08998 * 109.46857 * 305.00123 * 10 8 7 40 40 H 1.08998 * 109.47040 * 184.99718 * 10 8 7 41 41 H 1.09001 * 109.47396 * 89.99797 * 14 13 11 42 42 H 1.08999 * 109.47304 * 209.99925 * 14 13 11 43 43 H 1.09007 * 109.47078 * 330.00056 * 14 13 11 44 44 H 1.09007 * 109.45599 * 359.97438 * 15 13 11 45 45 H 1.09003 * 109.49329 * 298.55650 * 16 15 13 46 46 H 1.08998 * 109.50034 * 58.65229 * 16 15 13 47 47 H 1.08996 * 109.59684 * 294.86215 * 17 16 15 48 48 H 1.08999 * 109.70112 * 174.50021 * 17 16 15 49 49 H 0.97003 * 119.99544 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.58881 * 293.82832 * 27 18 17 51 51 H 1.09003 * 109.70571 * 173.46840 * 27 18 17 52 52 H 1.08998 * 109.49561 * 301.34472 * 28 15 13 53 53 H 1.08999 * 109.49481 * 61.44145 * 28 15 13 54 54 H 1.08995 * 109.47245 * 60.00084 * 29 8 7 55 55 H 1.09006 * 109.46721 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 2.8405 3.1690 -1.4423 7 6 4.1892 3.1262 -0.7213 8 6 3.9819 2.6601 0.7212 9 1 3.3170 3.3543 1.2352 10 6 5.3308 2.6167 1.4421 11 6 5.8875 4.0129 1.5503 12 8 5.2669 4.9503 1.0953 13 7 7.0756 4.2198 2.1519 14 6 7.8257 3.0875 2.7010 15 6 7.6173 5.5770 2.2567 16 6 8.9667 5.6444 1.5380 17 6 9.5134 7.0732 1.6196 18 7 9.5602 7.4814 3.0301 19 6 10.7204 7.9567 3.5808 20 1 11.6746 7.6461 3.1813 21 6 10.6701 8.8376 4.6524 22 7 11.7180 8.9815 5.4357 23 14 9.1153 9.8189 4.9827 24 1 8.2612 9.0827 5.9490 25 1 9.4767 11.1428 5.5500 26 1 8.3720 10.0113 3.7116 27 6 8.3384 7.3706 3.8386 28 6 7.8047 5.9387 3.7319 29 6 3.3590 1.2626 0.7210 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 1.2568 1.8017 -1.9562 34 1 2.8828 1.0777 -1.9563 35 1 2.1756 3.8631 -0.9282 36 1 2.9879 3.5011 -2.4700 37 1 4.6327 4.1219 -0.7208 38 1 4.8542 2.4321 -1.2353 39 1 6.0238 1.9919 0.8788 40 1 5.1959 2.2010 2.4406 41 1 8.4894 2.6856 1.9354 42 1 8.4158 3.4220 3.5542 43 1 7.1299 2.3122 3.0221 44 1 6.9249 6.2809 1.7950 45 1 9.6674 4.9589 2.0147 46 1 8.8367 5.3639 0.4928 47 1 8.8597 7.7469 1.0656 48 1 10.5171 7.1073 1.1958 49 1 11.6827 9.5968 6.1848 50 1 7.5888 8.0686 3.4655 51 1 8.5647 7.5996 4.8800 52 1 6.8474 5.8677 4.2483 53 1 8.5164 5.2503 4.1876 54 1 4.0239 0.5686 0.2070 55 1 3.2109 0.9308 1.7487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005489849.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:02 Heat of formation + Delta-G solvation = -95.777067 kcal Electronic energy + Delta-G solvation = -30825.467047 eV Core-core repulsion = 26861.496156 eV Total energy + Delta-G solvation = -3963.970891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42270 -40.18601 -39.18245 -37.48812 -36.53339 -34.43798 -33.45104 -32.10569 -31.98521 -31.03805 -28.40840 -27.89390 -27.30414 -26.46975 -24.48700 -23.73766 -23.35961 -22.45589 -21.00520 -20.75960 -19.93686 -18.83138 -18.04134 -17.45799 -17.35426 -16.90115 -16.56709 -16.48393 -16.02473 -15.97566 -15.62831 -15.36879 -15.09155 -14.92769 -14.58974 -14.55523 -14.28908 -14.17568 -13.96308 -13.87393 -13.67151 -13.45290 -13.28083 -13.12566 -12.92822 -12.69856 -12.64073 -12.48971 -12.43704 -12.20732 -12.04251 -11.94455 -11.92311 -11.77434 -11.50212 -11.42771 -11.35978 -11.35816 -11.27953 -10.79344 -10.52757 -10.37257 -9.54866 -8.98424 -8.18069 -5.49651 1.26927 1.39475 1.47859 1.70834 2.03536 2.39188 2.79969 3.03432 3.30759 3.58705 3.67897 3.75334 3.85918 3.96415 4.09501 4.09955 4.20747 4.22318 4.27938 4.29159 4.35444 4.44250 4.49742 4.51119 4.52690 4.54472 4.61003 4.66670 4.67394 4.68337 4.71032 4.78159 4.83362 4.85662 4.87932 4.91467 4.99813 5.03612 5.04694 5.06503 5.07803 5.15482 5.23003 5.25932 5.34122 5.40788 5.47674 5.54735 5.62149 5.85397 6.11507 6.29469 6.51852 6.88771 7.26709 7.59701 8.00995 9.01497 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.002144 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.501436 B =13056.879045 C =13119.034102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.087 3.913 4 H 0.059 0.941 5 C -0.134 4.134 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.062 4.062 9 H 0.061 0.939 10 C -0.126 4.126 11 C 0.506 3.494 12 O -0.581 6.581 13 N -0.610 5.610 14 C 0.069 3.931 15 C 0.153 3.847 16 C -0.123 4.123 17 C 0.145 3.855 18 N -0.618 5.618 19 C -0.245 4.245 20 H 0.058 0.942 21 C -0.031 4.031 22 N -0.953 5.953 23 Si 0.940 3.060 24 H -0.275 1.275 25 H -0.310 1.310 26 H -0.268 1.268 27 C 0.124 3.876 28 C -0.127 4.127 29 C -0.103 4.103 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.027 0.973 48 H 0.064 0.936 49 H 0.262 0.738 50 H 0.024 0.976 51 H 0.054 0.946 52 H 0.068 0.932 53 H 0.071 0.929 54 H 0.078 0.922 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.858 -21.805 -11.403 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.030 3.970 4 H 0.077 0.923 5 C -0.171 4.171 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.081 4.081 9 H 0.079 0.921 10 C -0.165 4.165 11 C 0.296 3.704 12 O -0.461 6.461 13 N -0.342 5.342 14 C -0.073 4.073 15 C 0.049 3.951 16 C -0.163 4.163 17 C 0.020 3.980 18 N -0.343 5.343 19 C -0.374 4.374 20 H 0.076 0.924 21 C -0.227 4.227 22 N -0.599 5.599 23 Si 0.769 3.231 24 H -0.202 1.202 25 H -0.238 1.238 26 H -0.193 1.193 27 C -0.001 4.001 28 C -0.167 4.167 29 C -0.141 4.141 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.045 0.955 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.042 0.958 51 H 0.072 0.928 52 H 0.087 0.913 53 H 0.090 0.910 54 H 0.096 0.904 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.992 -21.429 -11.530 32.137 hybrid contribution -0.379 1.456 0.518 1.591 sum -21.372 -19.973 -11.012 31.256 Atomic orbital electron populations 1.22937 0.80065 1.03647 1.00496 1.87865 1.20919 1.28455 1.95209 1.22168 0.95125 0.83985 0.95739 0.92291 1.21979 1.01324 0.96902 0.96944 1.21422 0.96576 0.96306 1.00699 1.21690 0.97445 1.01744 0.94894 1.20773 0.95131 0.96197 0.96047 0.92094 1.21785 0.97962 0.92385 1.04389 1.21377 0.80076 0.92527 0.76400 1.90648 1.59902 1.46197 1.49375 1.48119 1.20510 1.07995 1.57548 1.22041 0.97543 0.88138 0.99595 1.20745 0.95056 0.84014 0.95312 1.22149 0.95860 0.97940 1.00331 1.21059 0.99604 0.93549 0.83836 1.44503 1.07537 1.75086 1.07134 1.18874 0.85654 1.20142 1.12772 0.92427 1.25837 0.99221 0.99563 0.98029 1.69949 1.32537 1.39769 1.17653 0.86020 0.80901 0.78012 0.78144 1.20159 1.23846 1.19292 1.21304 0.87960 0.95614 0.95261 1.22194 1.00738 0.97277 0.96490 1.21565 0.95012 0.96263 1.01250 0.88524 0.93532 0.93580 0.91655 0.91228 0.92673 0.91443 0.92345 0.91570 0.86571 0.86511 0.91125 0.91288 0.88175 0.90806 0.91317 0.90627 0.95493 0.91758 0.92938 0.95780 0.92772 0.91343 0.91029 0.90370 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.41 -6.65 10.35 -148.98 -1.54 -8.19 16 3 C 0.09 1.30 2.61 30.59 0.08 1.38 16 4 H 0.06 0.87 7.79 -2.39 -0.02 0.86 16 5 C -0.13 -1.93 5.54 30.59 0.17 -1.76 16 6 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 7 C -0.12 -2.21 4.94 30.59 0.15 -2.06 16 8 C -0.06 -1.02 1.84 -10.79 -0.02 -1.04 16 9 H 0.06 1.24 7.96 -2.39 -0.02 1.22 16 10 C -0.13 -1.85 3.73 29.85 0.11 -1.73 16 11 C 0.51 12.16 7.39 87.66 0.65 12.80 16 12 O -0.58 -18.81 13.29 -3.05 -0.04 -18.85 16 13 N -0.61 -14.44 2.76 -822.42 -2.27 -16.71 16 14 C 0.07 1.10 9.33 127.77 1.19 2.29 16 15 C 0.15 4.69 2.48 45.02 0.11 4.81 16 16 C -0.12 -3.78 5.34 30.67 0.16 -3.62 16 17 C 0.14 5.58 6.52 86.36 0.56 6.15 16 18 N -0.62 -29.00 2.77 -699.11 -1.94 -30.93 16 19 C -0.24 -13.77 10.04 84.04 0.84 -12.93 16 20 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 21 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16 22 N -0.95 -59.55 13.97 21.65 0.30 -59.25 16 23 Si 0.94 47.22 24.35 68.60 1.67 48.89 16 24 H -0.27 -13.04 6.62 99.48 0.66 -12.38 16 25 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 26 H -0.27 -13.21 6.63 99.48 0.66 -12.55 16 27 C 0.12 5.34 4.20 86.36 0.36 5.71 16 28 C -0.13 -4.29 5.31 30.67 0.16 -4.13 16 29 C -0.10 -1.39 4.85 30.60 0.15 -1.25 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.45 8.09 -2.38 -0.02 0.43 16 32 H 0.05 0.44 7.87 -2.39 -0.02 0.42 16 33 H 0.06 0.86 7.87 -2.39 -0.02 0.84 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.45 5.95 -2.39 -0.01 1.43 16 38 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.12 1.23 8.11 -2.39 -0.02 1.21 16 40 H 0.12 1.20 7.40 -2.39 -0.02 1.18 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.27 6.46 -2.39 -0.02 1.26 16 43 H 0.10 0.98 6.44 -2.38 -0.02 0.96 16 44 H 0.07 2.64 6.90 -2.38 -0.02 2.63 16 45 H 0.07 2.08 7.72 -2.39 -0.02 2.07 16 46 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 49 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 50 H 0.02 1.05 7.08 -2.39 -0.02 1.04 16 51 H 0.05 2.55 4.50 -2.39 -0.01 2.54 16 52 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 53 H 0.07 2.38 6.72 -2.39 -0.02 2.36 16 54 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 55 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -71.47 404.63 3.47 -68.01 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.74 Total: 13.98 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.54 Total: 3.06 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.90 Total: -106.90 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -1.58 Total: -27.04 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.67 Total: 48.89 kcal Total: -71.47 3.47 -68.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005489849.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.772 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds