Wall clock time and date at job start Tue Mar 31 2020 22:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 114.00114 * 2 1 4 4 H 1.08998 * 109.47270 * 330.00591 * 3 2 1 5 5 C 1.53002 * 109.46742 * 90.00338 * 3 2 1 6 6 C 1.53001 * 109.47416 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47374 * 300.00392 * 6 5 3 8 8 C 1.53002 * 109.47169 * 59.99457 * 7 6 5 9 9 H 1.08998 * 109.47032 * 60.00276 * 8 7 6 10 10 C 1.53005 * 109.46889 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47163 * 294.99682 * 10 8 7 12 12 O 1.21284 * 119.99521 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00229 * 180.02562 * 11 10 8 14 14 C 1.46502 * 119.99824 * 359.97438 * 13 11 10 15 15 C 1.46498 * 120.00172 * 180.02562 * 13 11 10 16 16 C 1.53034 * 109.46221 * 119.99650 * 15 13 11 17 17 C 1.53193 * 109.34154 * 181.40101 * 16 15 13 18 18 N 1.46931 * 108.77251 * 305.35064 * 17 16 15 19 19 C 1.36934 * 120.62746 * 233.58248 * 18 17 16 20 20 H 1.07998 * 120.00350 * 27.69174 * 19 18 17 21 21 C 1.38818 * 120.00071 * 207.68722 * 19 18 17 22 22 N 1.31620 * 119.99342 * 17.37025 * 21 19 18 23 23 Si 1.86795 * 120.00018 * 197.36882 * 21 19 18 24 24 H 1.48499 * 109.47304 * 60.00127 * 23 21 19 25 25 H 1.48506 * 109.46600 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47518 * 299.99835 * 23 21 19 27 27 C 1.46923 * 118.73783 * 53.61145 * 18 17 16 28 28 C 1.53101 * 109.50265 * 240.05307 * 15 13 11 29 29 C 1.52998 * 109.47052 * 300.00126 * 8 7 6 30 30 H 1.09006 * 109.47250 * 59.99269 * 1 2 3 31 31 H 1.08996 * 109.47433 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47034 * 299.99504 * 1 2 3 33 33 H 1.09006 * 109.47225 * 59.99863 * 5 3 2 34 34 H 1.09003 * 109.47231 * 299.99929 * 5 3 2 35 35 H 1.09002 * 109.47156 * 179.97438 * 6 5 3 36 36 H 1.09010 * 109.46442 * 59.99920 * 6 5 3 37 37 H 1.08998 * 109.46918 * 299.99664 * 7 6 5 38 38 H 1.08996 * 109.47615 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.46688 * 175.00399 * 10 8 7 40 40 H 1.08997 * 109.47398 * 54.99940 * 10 8 7 41 41 H 1.09000 * 109.47207 * 270.00137 * 14 13 11 42 42 H 1.09004 * 109.47056 * 30.00216 * 14 13 11 43 43 H 1.09003 * 109.46925 * 150.00159 * 14 13 11 44 44 H 1.09005 * 109.44840 * 0.03168 * 15 13 11 45 45 H 1.09005 * 109.49804 * 61.43624 * 16 15 13 46 46 H 1.09004 * 109.50040 * 301.37408 * 16 15 13 47 47 H 1.09002 * 109.58640 * 65.13658 * 17 16 15 48 48 H 1.09001 * 109.58405 * 185.42266 * 17 16 15 49 49 H 0.97004 * 119.99493 * 180.02562 * 22 21 19 50 50 H 1.08994 * 109.58714 * 66.17423 * 27 18 17 51 51 H 1.08997 * 109.58244 * 186.60040 * 27 18 17 52 52 H 1.09000 * 109.49098 * 58.67384 * 28 15 13 53 53 H 1.09002 * 109.51433 * 298.59883 * 28 15 13 54 54 H 1.08999 * 109.47003 * 179.97438 * 29 8 7 55 55 H 1.08998 * 109.47324 * 299.99971 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7712 1.4425 6 6 2.8406 3.1687 1.4427 7 6 4.1892 3.1260 0.7216 8 6 3.9818 2.6602 -0.7209 9 1 3.3168 3.3544 -1.2348 10 6 5.3306 2.6170 -1.4419 11 6 5.8874 4.0132 -1.5500 12 8 5.2667 4.9504 -1.0947 13 7 7.0751 4.2203 -2.1525 14 6 7.8251 3.0880 -2.7018 15 6 7.6166 5.5775 -2.2570 16 6 8.9669 5.6443 -1.5400 17 6 9.5142 7.0729 -1.6210 18 7 9.5595 7.4827 -3.0312 19 6 10.7193 7.9582 -3.5826 20 1 11.6738 7.6432 -3.1877 21 6 10.6681 8.8450 -4.6493 22 7 9.5529 9.4921 -4.9141 23 14 12.1817 9.1201 -5.7088 24 1 12.5913 7.8350 -6.3301 25 1 11.8679 10.1063 -6.7737 26 1 13.2891 9.6372 -4.8653 27 6 8.3367 7.3732 -3.8383 28 6 7.8027 5.9412 -3.7325 29 6 3.3589 1.2628 -0.7210 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.8829 1.0772 1.9564 34 1 1.2568 1.8013 1.9564 35 1 2.9880 3.5007 2.4704 36 1 2.1756 3.8629 0.9288 37 1 4.8542 2.4318 1.2355 38 1 4.6328 4.1216 0.7213 39 1 5.1956 2.2014 -2.4405 40 1 6.0237 1.9920 -0.8788 41 1 8.4894 2.6866 -1.9365 42 1 7.1293 2.3124 -3.0221 43 1 8.4144 3.4225 -3.5555 44 1 6.9245 6.2810 -1.7942 45 1 9.6670 4.9590 -2.0180 46 1 8.8383 5.3626 -0.4949 47 1 8.8614 7.7462 -1.0655 48 1 10.5178 7.1042 -1.1967 49 1 9.5170 10.1115 -5.6597 50 1 7.5880 8.0710 -3.4637 51 1 8.5644 7.6024 -4.8793 52 1 6.8448 5.8712 -4.2480 53 1 8.5134 5.2532 -4.1903 54 1 3.2107 0.9311 -1.7487 55 1 4.0238 0.5686 -0.2072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005489851.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:10 Heat of formation + Delta-G solvation = -99.421852 kcal Electronic energy + Delta-G solvation = -30717.481986 eV Core-core repulsion = 26753.353045 eV Total energy + Delta-G solvation = -3964.128941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.38697 -40.14178 -39.01351 -37.45595 -36.46438 -34.37853 -33.37142 -31.93077 -31.40257 -31.01510 -28.36627 -27.86480 -27.29846 -26.58562 -23.94644 -23.83453 -23.35663 -22.39702 -20.88768 -20.68804 -19.91238 -18.74970 -17.94410 -17.38449 -17.15962 -16.83794 -16.53065 -16.48807 -16.02320 -15.78269 -15.40814 -15.36703 -15.06794 -14.85855 -14.55620 -14.34212 -14.17750 -14.12133 -13.87209 -13.80115 -13.28130 -13.24322 -13.11387 -13.00963 -12.89694 -12.68662 -12.57054 -12.53996 -12.42917 -12.07793 -12.01680 -11.94002 -11.91798 -11.89785 -11.52477 -11.41957 -11.35481 -11.31544 -11.26992 -10.56472 -10.53576 -10.36829 -9.50949 -8.73019 -7.88196 -5.34063 1.48052 1.50193 1.57309 1.72638 2.06970 2.51496 2.80425 3.27371 3.59718 3.64989 3.69839 3.75702 3.93736 4.06623 4.10101 4.10876 4.22941 4.29558 4.31010 4.37415 4.45579 4.50140 4.51504 4.53046 4.55082 4.64142 4.66476 4.67877 4.70719 4.76167 4.78800 4.84104 4.84785 4.88505 5.01183 5.04595 5.05882 5.06046 5.07952 5.14638 5.23361 5.26262 5.29251 5.34509 5.44998 5.48158 5.55265 5.62882 5.65973 5.69233 6.29808 6.37378 6.55015 7.12635 7.29226 7.82929 8.36188 9.18794 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.002008 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.566817 B =13938.232451 C =14076.255626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.087 3.913 4 H 0.058 0.942 5 C -0.133 4.133 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.063 4.063 9 H 0.059 0.941 10 C -0.124 4.124 11 C 0.503 3.497 12 O -0.584 6.584 13 N -0.610 5.610 14 C 0.069 3.931 15 C 0.155 3.845 16 C -0.119 4.119 17 C 0.143 3.857 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.071 0.929 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.971 3.029 24 H -0.275 1.275 25 H -0.297 1.297 26 H -0.275 1.275 27 C 0.181 3.819 28 C -0.127 4.127 29 C -0.103 4.103 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.005 0.995 48 H 0.063 0.937 49 H 0.250 0.750 50 H -0.013 1.013 51 H 0.060 0.940 52 H 0.055 0.945 53 H 0.068 0.932 54 H 0.076 0.924 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.763 -23.128 9.221 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.030 3.970 4 H 0.076 0.924 5 C -0.171 4.171 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.082 4.082 9 H 0.077 0.923 10 C -0.164 4.164 11 C 0.293 3.707 12 O -0.464 6.464 13 N -0.342 5.342 14 C -0.072 4.072 15 C 0.051 3.949 16 C -0.159 4.159 17 C 0.016 3.984 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.089 0.911 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.798 3.202 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.201 1.201 27 C 0.055 3.945 28 C -0.167 4.167 29 C -0.140 4.140 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.023 0.977 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.005 0.995 51 H 0.078 0.922 52 H 0.073 0.927 53 H 0.087 0.913 54 H 0.095 0.905 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.981 -22.707 9.341 28.255 hybrid contribution 0.376 1.350 -0.658 1.548 sum -13.604 -21.357 8.684 26.769 Atomic orbital electron populations 1.22937 0.80062 1.03662 1.00491 1.87860 1.20923 1.28402 1.95207 1.22163 0.95116 0.83991 0.95740 0.92356 1.21979 1.01342 0.96820 0.96949 1.21424 0.96540 0.96382 1.00678 1.21684 0.97488 1.01675 0.94922 1.20773 0.95129 0.96262 0.96030 0.92273 1.21781 0.97968 0.92227 1.04395 1.21439 0.80153 0.92586 0.76474 1.90650 1.59938 1.46349 1.49508 1.48156 1.20558 1.08065 1.57410 1.22041 0.97544 0.88045 0.99612 1.20721 0.94857 0.83610 0.95709 1.22125 0.95823 0.98066 0.99867 1.21007 0.98766 0.93189 0.85391 1.44329 1.08314 1.74502 1.05982 1.19511 0.86318 1.19680 1.13748 0.91106 1.25862 0.99868 0.96326 1.02783 1.70205 1.28636 1.28709 1.30821 0.85295 0.79254 0.77359 0.78259 1.20050 1.22291 1.20091 1.20517 0.86290 0.91286 0.96452 1.22284 0.99993 0.98676 0.95733 1.21556 0.95022 0.96149 1.01285 0.93570 0.88469 0.93576 0.91132 0.91606 0.91420 0.92775 0.91455 0.92564 0.86499 0.86448 0.91001 0.88195 0.91255 0.91964 0.90963 0.91195 0.97721 0.91889 0.94106 0.99472 0.92176 0.92655 0.91319 0.90496 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.51 16 2 O -0.40 -6.94 10.35 -148.98 -1.54 -8.48 16 3 C 0.09 1.39 2.61 30.59 0.08 1.47 16 4 H 0.06 0.94 7.79 -2.39 -0.02 0.92 16 5 C -0.13 -2.05 5.54 30.60 0.17 -1.88 16 6 C -0.11 -2.01 5.92 30.59 0.18 -1.83 16 7 C -0.12 -2.42 4.94 30.59 0.15 -2.26 16 8 C -0.06 -1.14 1.84 -10.79 -0.02 -1.16 16 9 H 0.06 1.32 7.96 -2.39 -0.02 1.30 16 10 C -0.12 -2.05 3.73 29.85 0.11 -1.94 16 11 C 0.50 13.49 7.39 87.66 0.65 14.14 16 12 O -0.58 -20.93 13.29 -3.04 -0.04 -20.97 16 13 N -0.61 -16.16 2.76 -822.32 -2.27 -18.43 16 14 C 0.07 1.22 9.33 127.77 1.19 2.41 16 15 C 0.15 5.39 2.49 45.04 0.11 5.50 16 16 C -0.12 -4.01 5.33 30.67 0.16 -3.84 16 17 C 0.14 6.04 6.51 86.36 0.56 6.61 16 18 N -0.61 -30.87 2.99 -699.09 -2.09 -32.97 16 19 C -0.26 -14.39 9.59 84.04 0.81 -13.59 16 20 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 21 C -0.05 -2.98 4.91 84.86 0.42 -2.56 16 22 N -0.94 -56.25 11.19 21.65 0.24 -56.01 16 23 Si 0.97 44.63 29.59 68.60 2.03 46.66 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 27 C 0.18 9.01 5.31 86.36 0.46 9.46 16 28 C -0.13 -4.86 5.31 30.69 0.16 -4.70 16 29 C -0.10 -1.50 4.85 30.59 0.15 -1.35 16 30 H 0.05 0.48 8.09 -2.38 -0.02 0.46 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.47 7.87 -2.39 -0.02 0.45 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.52 5.95 -2.39 -0.01 1.50 16 39 H 0.12 1.40 7.40 -2.39 -0.02 1.38 16 40 H 0.12 1.40 8.11 -2.39 -0.02 1.38 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 1.11 6.44 -2.38 -0.02 1.10 16 43 H 0.07 1.37 6.46 -2.39 -0.02 1.35 16 44 H 0.06 2.60 6.90 -2.38 -0.02 2.58 16 45 H 0.07 2.29 7.72 -2.38 -0.02 2.27 16 46 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 47 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 48 H 0.06 2.55 7.94 -2.39 -0.02 2.53 16 49 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 50 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 51 H 0.06 3.34 6.04 -2.39 -0.01 3.33 16 52 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 53 H 0.07 2.49 6.73 -2.39 -0.02 2.47 16 54 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 55 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -70.64 411.07 3.73 -66.91 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.83 Total: 17.28 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.57 Total: 5.99 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -4.12 Total: -107.40 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.58 Total: -29.45 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.64 3.73 -66.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005489851.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.507 kcal (2) G-P(sol) polarization free energy of solvation -70.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds