Wall clock time and date at job start Tue Mar 31 2020 22:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99945 * 2 1 4 4 C 1.53003 * 109.47071 * 209.99876 * 3 2 1 5 5 C 1.53003 * 109.46956 * 299.99797 * 4 3 2 6 6 C 1.52997 * 109.47546 * 300.00050 * 5 4 3 7 7 C 1.52995 * 109.47592 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47524 * 174.99800 * 7 6 5 9 9 O 1.21280 * 120.00210 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00339 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99813 * 0.02562 * 10 8 7 12 12 C 1.46495 * 120.00350 * 180.02562 * 10 8 7 13 13 C 1.53039 * 109.46476 * 240.00071 * 12 10 8 14 14 C 1.53192 * 109.31624 * 178.61195 * 13 12 10 15 15 N 1.46925 * 108.89163 * 54.56131 * 14 13 12 16 16 C 1.36940 * 120.62821 * 126.46045 * 15 14 13 17 17 H 1.08000 * 119.99751 * 331.92858 * 16 15 14 18 18 C 1.38810 * 120.00078 * 151.92771 * 16 15 14 19 19 N 1.31619 * 119.99689 * 343.17980 * 18 16 15 20 20 Si 1.86795 * 119.99988 * 163.18147 * 18 16 15 21 21 H 1.48509 * 109.47304 * 59.99932 * 20 18 16 22 22 H 1.48501 * 109.47440 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47535 * 299.99868 * 20 18 16 24 24 C 1.46954 * 118.71946 * 306.64559 * 15 14 13 25 25 C 1.53044 * 109.46278 * 119.92820 * 12 10 8 26 26 C 1.53003 * 109.47034 * 59.99997 * 6 5 4 27 27 C 1.52997 * 109.47060 * 90.00053 * 3 2 1 28 28 H 1.08996 * 109.46741 * 60.00613 * 1 2 3 29 29 H 1.08999 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47293 * 300.00225 * 1 2 3 31 31 H 1.08996 * 109.47006 * 329.99736 * 3 2 1 32 32 H 1.09004 * 109.47133 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.47334 * 59.99873 * 4 3 2 34 34 H 1.09002 * 109.47183 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46920 * 60.00211 * 5 4 3 36 36 H 1.09002 * 109.47097 * 300.00570 * 6 5 4 37 37 H 1.09010 * 109.46872 * 54.99714 * 7 6 5 38 38 H 1.08998 * 109.47056 * 295.00589 * 7 6 5 39 39 H 1.08998 * 109.46749 * 269.99919 * 11 10 8 40 40 H 1.08997 * 109.46972 * 29.99702 * 11 10 8 41 41 H 1.08997 * 109.46923 * 150.00230 * 11 10 8 42 42 H 1.09004 * 109.44555 * 359.97067 * 12 10 8 43 43 H 1.09005 * 109.49298 * 58.66180 * 13 12 10 44 44 H 1.08990 * 109.52302 * 298.58555 * 13 12 10 45 45 H 1.08997 * 109.58838 * 174.42439 * 14 13 12 46 46 H 1.09002 * 109.58672 * 294.71002 * 14 13 12 47 47 H 0.97000 * 119.99637 * 180.02562 * 19 18 16 48 48 H 1.09000 * 109.47125 * 293.56762 * 24 15 14 49 49 H 1.09000 * 109.71403 * 173.28134 * 24 15 14 50 50 H 1.09000 * 109.50000 * 301.34377 * 25 12 10 51 51 H 1.09010 * 109.49012 * 61.40617 * 25 12 10 52 52 H 1.09004 * 109.47133 * 60.00022 * 26 6 5 53 53 H 1.08996 * 109.47334 * 180.02562 * 26 6 5 54 54 H 1.09004 * 109.47142 * 179.97438 * 27 3 2 55 55 H 1.09002 * 109.46842 * 299.99686 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 -0.7212 5 6 4.2927 0.2892 0.0001 6 6 4.5002 0.7551 1.4426 7 6 5.4334 -0.2192 2.1641 8 6 5.7358 0.3039 3.5446 9 8 5.2522 1.3525 3.9152 10 7 6.5438 -0.3935 4.3675 11 6 7.1286 -1.6600 3.9197 12 6 6.8374 0.1147 5.7097 13 6 8.3454 0.3320 5.8542 14 6 8.6449 0.8960 7.2467 15 7 8.0648 0.0012 8.2573 16 6 8.8369 -0.4995 9.2714 17 1 9.8976 -0.6393 9.1240 18 6 8.2563 -0.8272 10.4889 19 7 7.0627 -0.3643 10.7945 20 14 9.1689 -1.9251 11.6935 21 1 10.4550 -1.2851 12.0701 22 1 8.3399 -2.1221 12.9097 23 1 9.4377 -3.2404 11.0588 24 6 6.6412 -0.3493 8.1564 25 6 6.3641 -0.8993 6.7538 26 6 3.1514 0.7973 2.1638 27 6 2.2177 1.7713 1.4425 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.3450 1.9993 -0.5139 32 1 3.8025 2.2589 -0.7208 33 1 3.2112 0.9313 -1.7489 34 1 5.2537 0.2595 -0.5134 35 1 3.8494 -0.7066 0.0001 36 1 4.9434 1.7509 1.4426 37 1 6.3618 -0.3173 1.6012 38 1 4.9513 -1.1936 2.2422 39 1 6.4595 -2.4806 4.1785 40 1 7.2695 -1.6331 2.8392 41 1 8.0915 -1.8084 4.4083 42 1 6.3179 1.0609 5.8611 43 1 8.6857 1.0366 5.0953 44 1 8.8641 -0.6181 5.7272 45 1 9.7234 0.9598 7.3909 46 1 8.2043 1.8885 7.3414 47 1 6.6571 -0.5930 11.6455 48 1 6.0351 0.5405 8.3263 49 1 6.3953 -1.1065 8.9009 50 1 5.2943 -1.0713 6.6352 51 1 6.9007 -1.8384 6.6181 52 1 2.7081 -0.1985 2.1638 53 1 3.2991 1.1297 3.1913 54 1 2.6614 2.7669 1.4425 55 1 1.2568 1.8014 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006477212.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:49 Heat of formation + Delta-G solvation = -97.806221 kcal Electronic energy + Delta-G solvation = -30957.727783 eV Core-core repulsion = 26993.668902 eV Total energy + Delta-G solvation = -3964.058882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38532 -40.20319 -39.01328 -37.16950 -36.44892 -34.34996 -32.96613 -31.88273 -31.64279 -31.34835 -28.32967 -27.87398 -27.25058 -26.49823 -23.93346 -23.87265 -23.55498 -22.34276 -20.76056 -20.52256 -19.90302 -18.75299 -17.91545 -17.26835 -17.14804 -16.85785 -16.72867 -16.36990 -16.23551 -15.66699 -15.40178 -15.13030 -14.87902 -14.84209 -14.71454 -14.36975 -14.14487 -14.05812 -13.91260 -13.54576 -13.27969 -13.19795 -13.15594 -13.02514 -12.89094 -12.81717 -12.57524 -12.53614 -12.33738 -12.10602 -12.10080 -12.01274 -11.95183 -11.88556 -11.48596 -11.43730 -11.32416 -11.27812 -10.93424 -10.60218 -10.56836 -10.24956 -9.51814 -8.72969 -7.88653 -5.35336 1.47623 1.49911 1.57059 1.72662 2.08998 2.51030 2.93807 3.27126 3.58259 3.64950 3.78142 3.80591 3.89912 3.99629 4.06225 4.21896 4.24018 4.30602 4.34093 4.43080 4.46099 4.49976 4.51221 4.58138 4.62249 4.64050 4.68173 4.71182 4.73563 4.74735 4.83744 4.86559 4.87135 4.94414 4.99446 5.04185 5.06200 5.09360 5.13297 5.18287 5.21110 5.27912 5.32416 5.38466 5.43871 5.54058 5.62199 5.64188 5.66357 5.68849 6.35649 6.37059 6.54701 7.12013 7.29408 7.82079 8.35825 9.18599 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024533 B = 0.002165 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.038756 B =12932.003906 C =13331.850397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.089 3.911 4 C -0.114 4.114 5 C -0.103 4.103 6 C -0.066 4.066 7 C -0.125 4.125 8 C 0.502 3.498 9 O -0.584 6.584 10 N -0.611 5.611 11 C 0.070 3.930 12 C 0.155 3.845 13 C -0.120 4.120 14 C 0.143 3.857 15 N -0.608 5.608 16 C -0.263 4.263 17 H 0.072 0.928 18 C -0.054 4.054 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.296 1.296 23 H -0.274 1.274 24 C 0.182 3.818 25 C -0.125 4.125 26 C -0.110 4.110 27 C -0.138 4.138 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.005 0.995 47 H 0.250 0.750 48 H -0.014 1.014 49 H 0.059 0.941 50 H 0.052 0.948 51 H 0.067 0.933 52 H 0.055 0.945 53 H 0.046 0.954 54 H 0.068 0.932 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 -2.025 -27.896 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.031 3.969 4 C -0.152 4.152 5 C -0.140 4.140 6 C -0.085 4.085 7 C -0.164 4.164 8 C 0.293 3.707 9 O -0.465 6.465 10 N -0.343 5.343 11 C -0.071 4.071 12 C 0.051 3.949 13 C -0.160 4.160 14 C 0.017 3.983 15 N -0.332 5.332 16 C -0.393 4.393 17 H 0.089 0.911 18 C -0.249 4.249 19 N -0.585 5.585 20 Si 0.799 3.201 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.200 1.200 24 C 0.055 3.945 25 C -0.165 4.165 26 C -0.147 4.147 27 C -0.176 4.176 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.139 0.861 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.023 0.977 47 H 0.059 0.941 48 H 0.005 0.995 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.085 0.915 52 H 0.074 0.926 53 H 0.064 0.936 54 H 0.087 0.913 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.565 -1.680 -27.565 28.634 hybrid contribution -0.210 0.083 1.654 1.669 sum -7.775 -1.597 -25.911 27.100 Atomic orbital electron populations 1.22896 0.80601 1.03372 1.00260 1.87891 1.20311 1.28319 1.95061 1.22189 0.95559 0.84461 0.94690 1.21648 0.93424 1.00794 0.99311 1.21446 0.99856 0.99522 0.93178 1.20870 0.94333 0.98304 0.95013 1.21806 1.02691 1.01176 0.90725 1.21511 0.77186 0.83735 0.88296 1.90639 1.52836 1.25409 1.77623 1.48176 1.48018 1.23942 1.14148 1.22026 0.99196 0.83897 1.02031 1.20714 0.95992 0.96833 0.81379 1.22143 0.94728 1.01811 0.97308 1.21004 0.97440 0.91447 0.88419 1.44321 1.06927 1.53277 1.28659 1.19511 0.92815 1.35925 0.91006 0.91051 1.25891 0.98317 1.02154 0.98509 1.70203 1.18422 1.46736 1.23101 0.85283 0.77739 0.79285 0.77783 1.20010 1.22282 1.20021 1.20501 0.84036 0.96473 0.93465 1.22252 0.99565 0.98921 0.95801 1.21476 0.95143 0.99258 0.98837 1.21980 0.99455 0.99405 0.96725 0.92984 0.88964 0.94426 0.91262 0.90087 0.90280 0.90250 0.91413 0.92157 0.86146 0.87495 0.91943 0.87912 0.90723 0.92071 0.91038 0.90757 0.91775 0.97732 0.94102 0.99543 0.92258 0.92928 0.91451 0.92610 0.93578 0.91322 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 113.37 1.23 1.55 16 2 O -0.40 -7.11 9.00 -148.98 -1.34 -8.45 16 3 C 0.09 1.41 2.92 30.59 0.09 1.50 16 4 C -0.11 -1.54 5.66 30.60 0.17 -1.37 16 5 C -0.10 -1.47 5.06 30.59 0.15 -1.31 16 6 C -0.07 -1.30 1.84 -10.80 -0.02 -1.32 16 7 C -0.12 -2.29 3.73 29.84 0.11 -2.18 16 8 C 0.50 14.31 7.39 87.65 0.65 14.96 16 9 O -0.58 -21.93 13.29 -3.03 -0.04 -21.97 16 10 N -0.61 -17.00 2.76 -822.45 -2.27 -19.27 16 11 C 0.07 1.32 9.33 127.77 1.19 2.51 16 12 C 0.15 5.54 2.48 45.02 0.11 5.65 16 13 C -0.12 -4.11 5.31 30.67 0.16 -3.94 16 14 C 0.14 6.12 6.51 86.36 0.56 6.69 16 15 N -0.61 -31.28 3.00 -699.03 -2.10 -33.37 16 16 C -0.26 -14.50 9.58 84.03 0.81 -13.70 16 17 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 18 C -0.05 -3.02 4.92 84.86 0.42 -2.61 16 19 N -0.94 -56.83 11.20 21.65 0.24 -56.59 16 20 Si 0.97 44.93 29.59 68.60 2.03 46.96 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 C 0.18 9.20 5.30 86.36 0.46 9.66 16 25 C -0.13 -4.95 5.34 30.67 0.16 -4.79 16 26 C -0.11 -2.60 4.80 30.60 0.15 -2.45 16 27 C -0.14 -2.75 5.63 30.59 0.17 -2.58 16 28 H 0.05 0.52 8.08 -2.39 -0.02 0.50 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.50 7.87 -2.39 -0.02 0.48 16 31 H 0.07 0.91 7.79 -2.39 -0.02 0.89 16 32 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.05 7.68 -2.38 -0.02 1.04 16 36 H 0.06 1.38 7.96 -2.39 -0.02 1.36 16 37 H 0.12 1.50 7.40 -2.38 -0.02 1.48 16 38 H 0.11 1.67 8.11 -2.39 -0.02 1.65 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.20 6.44 -2.39 -0.02 1.19 16 41 H 0.07 1.46 6.46 -2.39 -0.02 1.44 16 42 H 0.06 2.62 6.90 -2.38 -0.02 2.61 16 43 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.07 2.37 6.72 -2.39 -0.02 2.36 16 45 H 0.06 2.61 7.93 -2.39 -0.02 2.59 16 46 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 48 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 49 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 50 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.07 2.52 7.72 -2.38 -0.02 2.50 16 52 H 0.06 1.35 7.68 -2.38 -0.02 1.33 16 53 H 0.05 1.43 5.95 -2.39 -0.01 1.41 16 54 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 55 H 0.05 1.11 7.87 -2.39 -0.02 1.09 16 Total: -1.00 -71.91 409.02 3.93 -67.97 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.84 Total: 18.44 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 6.58 Total: 6.28 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -4.13 Total: -109.23 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.38 Total: -30.43 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.91 3.93 -67.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006477212.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.833 kcal (2) G-P(sol) polarization free energy of solvation -71.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds