Wall clock time and date at job start Tue Mar 31 2020 22:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99960 * 2 1 4 4 C 1.52996 * 109.46905 * 209.99803 * 3 2 1 5 5 C 1.52994 * 109.47579 * 299.99558 * 4 3 2 6 6 C 1.52996 * 109.47250 * 300.00562 * 5 4 3 7 7 C 1.53003 * 109.47374 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47135 * 174.99840 * 7 6 5 9 9 O 1.21281 * 119.99888 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99877 * 179.97438 * 8 7 6 11 11 C 1.46933 * 120.62947 * 0.02562 * 10 8 7 12 12 C 1.53190 * 108.76988 * 233.58400 * 11 10 8 13 13 C 1.53040 * 109.31665 * 305.36380 * 12 11 10 14 14 C 1.53042 * 109.53581 * 61.36543 * 13 12 11 15 15 H 1.08992 * 109.49510 * 58.59297 * 14 13 12 16 16 N 1.46503 * 109.49369 * 178.65187 * 14 13 12 17 17 C 1.46505 * 119.99980 * 60.00757 * 16 14 13 18 18 C 1.36939 * 120.00078 * 239.99805 * 16 14 13 19 19 H 1.08001 * 119.99929 * 324.57636 * 18 16 14 20 20 C 1.38807 * 119.99768 * 144.56891 * 18 16 14 21 21 N 1.31618 * 119.99695 * 157.65888 * 20 18 16 22 22 Si 1.86793 * 120.00384 * 337.65947 * 20 18 16 23 23 H 1.48504 * 109.47499 * 95.55752 * 22 20 18 24 24 H 1.48500 * 109.47264 * 215.56212 * 22 20 18 25 25 H 1.48508 * 109.47284 * 335.55985 * 22 20 18 26 26 C 1.46920 * 120.63129 * 179.71749 * 10 8 7 27 27 C 1.53003 * 109.47430 * 59.99716 * 6 5 4 28 28 C 1.52996 * 109.47068 * 89.99765 * 3 2 1 29 29 H 1.08999 * 109.46786 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47058 * 300.00118 * 1 2 3 31 31 H 1.08999 * 109.46856 * 60.00409 * 1 2 3 32 32 H 1.08998 * 109.46681 * 329.99429 * 3 2 1 33 33 H 1.09003 * 109.46744 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.47410 * 60.00181 * 4 3 2 35 35 H 1.08997 * 109.47989 * 180.02562 * 5 4 3 36 36 H 1.09009 * 109.46825 * 59.99840 * 5 4 3 37 37 H 1.08999 * 109.47139 * 299.99358 * 6 5 4 38 38 H 1.09001 * 109.47096 * 294.99624 * 7 6 5 39 39 H 1.08998 * 109.46950 * 54.99854 * 7 6 5 40 40 H 1.08997 * 109.58402 * 353.36824 * 11 10 8 41 41 H 1.08998 * 109.58548 * 113.65587 * 11 10 8 42 42 H 1.08997 * 109.50105 * 65.32035 * 12 11 10 43 43 H 1.08999 * 109.49434 * 185.41354 * 12 11 10 44 44 H 1.08998 * 109.46448 * 181.38756 * 13 12 11 45 45 H 1.09005 * 109.45729 * 301.34851 * 13 12 11 46 46 H 1.08993 * 109.47325 * 88.02238 * 17 16 14 47 47 H 1.09002 * 109.46759 * 208.02361 * 17 16 14 48 48 H 1.09004 * 109.46699 * 328.02467 * 17 16 14 49 49 H 0.97002 * 120.00219 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.59159 * 246.20374 * 26 10 8 51 51 H 1.08997 * 109.58609 * 6.62832 * 26 10 8 52 52 H 1.08999 * 109.47251 * 59.99711 * 27 6 5 53 53 H 1.08997 * 109.47254 * 180.02562 * 27 6 5 54 54 H 1.09003 * 109.46873 * 180.02562 * 28 3 2 55 55 H 1.08994 * 109.47236 * 299.99959 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3589 1.2633 -0.7212 5 6 4.2927 0.2894 0.0001 6 6 4.5001 0.7553 1.4425 7 6 5.4335 -0.2190 2.1640 8 6 5.7359 0.3042 3.5446 9 8 5.2528 1.3533 3.9148 10 7 6.5431 -0.3937 4.3679 11 6 7.1362 -1.6659 3.9334 12 6 6.8036 -2.7441 4.9695 13 6 7.2630 -2.2762 6.3523 14 6 6.5179 -0.9947 6.7327 15 1 5.4445 -1.1834 6.7293 16 7 6.9347 -0.5654 8.0699 17 6 8.3407 -0.2479 8.3323 18 6 6.0101 -0.4607 9.0746 19 1 5.0071 -0.1272 8.8529 20 6 6.3621 -0.7834 10.3780 21 7 5.6739 -0.2915 11.3864 22 14 7.8123 -1.9155 10.7009 23 1 9.0267 -1.1020 10.9631 24 1 7.5221 -2.7669 11.8825 25 1 8.0411 -2.7779 9.5137 26 6 6.8521 0.1064 5.7143 27 6 3.1514 0.7975 2.1638 28 6 2.2176 1.7714 1.4425 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.3450 1.9993 -0.5139 33 1 3.8020 2.2592 -0.7216 34 1 3.2112 0.9313 -1.7489 35 1 5.2537 0.2596 -0.5134 36 1 3.8494 -0.7064 0.0001 37 1 4.9435 1.7511 1.4425 38 1 4.9514 -1.1934 2.2423 39 1 6.3618 -0.3169 1.6012 40 1 6.7235 -1.9496 2.9653 41 1 8.2175 -1.5558 3.8516 42 1 5.7275 -2.9164 4.9827 43 1 7.3175 -3.6694 4.7093 44 1 7.0498 -3.0520 7.0876 45 1 8.3352 -2.0804 6.3318 46 1 8.5250 0.8017 8.1033 47 1 8.5657 -0.4357 9.3822 48 1 8.9773 -0.8735 7.7066 49 1 5.9199 -0.5167 12.2972 50 1 7.9110 0.3571 5.7770 51 1 6.2520 0.9924 5.9217 52 1 2.7081 -0.1983 2.1638 53 1 3.2991 1.1298 3.1913 54 1 2.6605 2.7674 1.4424 55 1 1.2568 1.8015 1.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027704747.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:40 Heat of formation + Delta-G solvation = -93.632787 kcal Electronic energy + Delta-G solvation = -31224.526124 eV Core-core repulsion = 27260.648216 eV Total energy + Delta-G solvation = -3963.877908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42523 -40.22556 -39.00159 -37.15725 -36.78185 -34.15067 -33.11740 -32.91633 -31.64120 -31.00212 -28.36813 -28.06553 -27.22272 -25.99521 -25.27770 -23.60156 -23.06855 -22.52165 -20.93449 -20.49107 -19.75627 -18.91900 -18.09789 -17.45811 -17.19659 -16.95617 -16.67075 -16.34484 -16.23171 -15.88216 -15.39509 -15.28296 -15.05450 -14.91003 -14.78587 -14.41585 -14.29899 -14.12500 -14.09337 -13.83031 -13.67722 -13.52126 -13.24389 -13.03205 -12.89633 -12.81035 -12.60467 -12.35019 -12.16924 -12.10820 -12.08382 -11.98749 -11.84632 -11.78145 -11.67699 -11.40517 -11.32797 -11.28396 -10.92986 -10.75110 -10.60636 -10.26242 -9.65446 -8.80010 -8.23858 -5.61940 1.28740 1.39676 1.52463 1.71604 2.06027 2.39207 2.93548 3.01862 3.31635 3.59199 3.77933 3.81063 3.93278 3.96788 4.06768 4.11136 4.20767 4.22587 4.24878 4.36154 4.43371 4.49020 4.49452 4.50602 4.58194 4.60961 4.63299 4.67301 4.70505 4.74385 4.78833 4.83701 4.86771 4.88613 4.88764 4.95506 4.98543 5.03668 5.08737 5.15037 5.19051 5.21373 5.32490 5.38348 5.41577 5.47181 5.53017 5.57450 5.66096 5.87219 6.10838 6.35225 6.54443 6.91966 7.28915 7.57636 7.96950 8.96506 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.002502 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.212047 B =11188.286779 C =11772.192918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.089 3.911 4 C -0.114 4.114 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.125 4.125 8 C 0.502 3.498 9 O -0.587 6.587 10 N -0.611 5.611 11 C 0.105 3.895 12 C -0.125 4.125 13 C -0.130 4.130 14 C 0.167 3.833 15 H 0.039 0.961 16 N -0.617 5.617 17 C 0.107 3.893 18 C -0.264 4.264 19 H 0.029 0.971 20 C -0.028 4.028 21 N -0.953 5.953 22 Si 0.961 3.039 23 H -0.273 1.273 24 H -0.310 1.310 25 H -0.250 1.250 26 C 0.114 3.886 27 C -0.111 4.111 28 C -0.138 4.138 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.107 0.893 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.021 0.979 47 H 0.029 0.971 48 H 0.070 0.930 49 H 0.264 0.736 50 H 0.071 0.929 51 H 0.048 0.952 52 H 0.055 0.945 53 H 0.042 0.958 54 H 0.068 0.932 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 -4.097 -30.636 30.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.031 3.969 4 C -0.152 4.152 5 C -0.139 4.139 6 C -0.085 4.085 7 C -0.164 4.164 8 C 0.292 3.708 9 O -0.468 6.468 10 N -0.344 5.344 11 C -0.017 4.017 12 C -0.163 4.163 13 C -0.169 4.169 14 C 0.060 3.940 15 H 0.057 0.943 16 N -0.341 5.341 17 C -0.037 4.037 18 C -0.394 4.394 19 H 0.047 0.953 20 C -0.224 4.224 21 N -0.597 5.597 22 Si 0.789 3.211 23 H -0.200 1.200 24 H -0.239 1.239 25 H -0.173 1.173 26 C -0.011 4.011 27 C -0.148 4.148 28 C -0.176 4.176 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.125 0.875 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.039 0.961 47 H 0.047 0.953 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.066 0.934 52 H 0.074 0.926 53 H 0.060 0.940 54 H 0.086 0.914 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.179 -3.710 -30.289 30.516 hybrid contribution -0.287 0.318 1.678 1.732 sum -0.108 -3.392 -28.612 28.812 Atomic orbital electron populations 1.22896 0.80642 1.03378 1.00213 1.87890 1.20265 1.28294 1.95048 1.22189 0.95682 0.84466 0.94535 1.21646 0.93325 1.00846 0.99347 1.21445 0.99956 0.99524 0.92995 1.20872 0.94151 0.98368 0.95108 1.21821 1.02929 1.01173 0.90474 1.21584 0.76960 0.83788 0.88432 1.90656 1.52720 1.25731 1.77692 1.48340 1.48176 1.23823 1.14070 1.22091 0.99643 0.80993 0.98936 1.21898 1.01822 0.99351 0.93266 1.22004 1.00630 0.96743 0.97566 1.20883 0.96978 0.92817 0.83299 0.94284 1.44125 1.04604 1.78296 1.07084 1.21416 0.84815 0.98502 0.98946 1.18627 0.94074 1.38943 0.87747 0.95310 1.26144 1.01594 0.99476 0.95143 1.70024 1.45170 1.45412 0.99133 0.85623 0.78872 0.79591 0.77038 1.20014 1.23888 1.17319 1.21885 1.00159 0.97228 0.81822 1.21481 0.95380 0.99261 0.98697 1.21981 0.99376 0.99401 0.96863 0.88931 0.94605 0.92902 0.91285 0.90097 0.90152 0.89960 0.91306 0.92186 0.87234 0.85675 0.86315 0.89317 0.92450 0.87486 0.93446 0.90966 0.96121 0.95316 0.91170 0.92686 0.91074 0.93363 0.92581 0.93971 0.91364 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 113.37 1.23 1.58 16 2 O -0.40 -7.36 9.00 -148.98 -1.34 -8.70 16 3 C 0.09 1.48 2.92 30.59 0.09 1.57 16 4 C -0.11 -1.55 5.66 30.59 0.17 -1.38 16 5 C -0.10 -1.44 5.06 30.59 0.15 -1.28 16 6 C -0.07 -1.31 1.84 -10.79 -0.02 -1.33 16 7 C -0.12 -2.25 3.52 29.85 0.11 -2.15 16 8 C 0.50 14.55 7.41 87.66 0.65 15.20 16 9 O -0.59 -22.98 13.38 -3.03 -0.04 -23.02 16 10 N -0.61 -16.87 2.97 -818.00 -2.43 -19.30 16 11 C 0.10 1.81 6.34 86.36 0.55 2.36 16 12 C -0.12 -2.57 6.08 30.67 0.19 -2.38 16 13 C -0.13 -3.97 5.11 30.62 0.16 -3.81 16 14 C 0.17 6.70 2.76 45.23 0.12 6.82 16 15 H 0.04 1.79 7.89 -2.39 -0.02 1.78 16 16 N -0.62 -29.94 2.42 -701.45 -1.69 -31.63 16 17 C 0.11 4.52 8.45 127.77 1.08 5.60 16 18 C -0.26 -15.80 9.85 84.03 0.83 -14.97 16 19 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 20 C -0.03 -1.66 5.31 84.86 0.45 -1.21 16 21 N -0.95 -61.76 13.97 21.65 0.30 -61.46 16 22 Si 0.96 46.80 24.94 68.60 1.71 48.51 16 23 H -0.27 -12.57 6.67 99.48 0.66 -11.90 16 24 H -0.31 -15.31 7.11 99.48 0.71 -14.60 16 25 H -0.25 -11.22 7.11 99.48 0.71 -10.52 16 26 C 0.11 4.12 5.81 86.52 0.50 4.62 16 27 C -0.11 -2.77 4.80 30.60 0.15 -2.62 16 28 C -0.14 -2.94 5.63 30.59 0.17 -2.77 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 0.52 7.87 -2.39 -0.02 0.50 16 31 H 0.05 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.07 0.95 7.79 -2.39 -0.02 0.94 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.05 7.68 -2.38 -0.02 1.03 16 37 H 0.06 1.39 7.95 -2.39 -0.02 1.37 16 38 H 0.11 1.65 7.69 -2.39 -0.02 1.63 16 39 H 0.13 1.41 7.94 -2.39 -0.02 1.39 16 40 H 0.12 1.23 5.93 -2.39 -0.01 1.22 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.99 6.73 -2.38 -0.02 1.97 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.03 1.31 3.08 -2.39 -0.01 1.30 16 48 H 0.07 2.40 6.46 -2.38 -0.02 2.39 16 49 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 50 H 0.07 2.38 7.53 -2.39 -0.02 2.36 16 51 H 0.05 2.15 7.00 -2.39 -0.02 2.13 16 52 H 0.06 1.42 7.68 -2.39 -0.02 1.41 16 53 H 0.04 1.39 5.95 -2.39 -0.01 1.38 16 54 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 55 H 0.05 1.15 7.87 -2.39 -0.02 1.14 16 Total: -1.00 -79.33 403.85 3.89 -75.44 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.80 Total: 16.33 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 6.57 Total: 3.84 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -3.82 Total: -112.39 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.38 Total: -31.72 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.71 Total: 48.51 kcal Total: -79.33 3.89 -75.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027704747.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.190 kcal (2) G-P(sol) polarization free energy of solvation -79.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds