Wall clock time and date at job start Tue Mar 31 2020 22:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00081 * 2 1 4 4 H 1.08996 * 109.47270 * 30.00093 * 3 2 1 5 5 C 1.50702 * 109.46968 * 269.99766 * 3 2 1 6 6 O 1.21277 * 119.99762 * 355.00328 * 5 3 2 7 7 N 1.34773 * 119.99813 * 175.00043 * 5 3 2 8 8 C 1.46919 * 120.63214 * 359.97438 * 7 5 3 9 9 C 1.53192 * 108.77715 * 233.58706 * 8 7 5 10 10 C 1.53045 * 109.31233 * 305.36615 * 9 8 7 11 11 C 1.53035 * 109.53450 * 61.36759 * 10 9 8 12 12 H 1.08992 * 109.50491 * 58.61757 * 11 10 9 13 13 N 1.46507 * 109.49527 * 178.68640 * 11 10 9 14 14 C 1.46493 * 120.00155 * 59.99178 * 13 11 10 15 15 C 1.36937 * 119.99641 * 240.00128 * 13 11 10 16 16 H 1.07999 * 119.99997 * 343.27406 * 15 13 11 17 17 C 1.38813 * 119.99952 * 163.55957 * 15 13 11 18 18 N 1.31614 * 119.99912 * 343.40266 * 17 15 13 19 19 Si 1.86804 * 119.99929 * 163.40798 * 17 15 13 20 20 H 1.48505 * 109.47091 * 59.99698 * 19 17 15 21 21 H 1.48494 * 109.46903 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47288 * 299.99755 * 19 17 15 23 23 C 1.46927 * 120.62797 * 179.97438 * 7 5 3 24 24 C 1.53000 * 109.46945 * 149.99793 * 3 2 1 25 25 C 1.53002 * 109.47270 * 60.00294 * 24 3 2 26 26 C 1.52993 * 109.47486 * 179.97438 * 25 24 3 27 27 C 1.52998 * 109.47376 * 59.99478 * 26 25 24 28 28 C 1.53002 * 109.47239 * 300.00674 * 27 26 25 29 29 C 1.52989 * 109.47503 * 299.99841 * 24 3 2 30 30 H 1.08999 * 109.47303 * 300.00219 * 1 2 3 31 31 H 1.08998 * 109.47551 * 59.99788 * 1 2 3 32 32 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.58710 * 113.80213 * 8 7 5 34 34 H 1.08996 * 109.58919 * 353.37479 * 8 7 5 35 35 H 1.09003 * 109.49600 * 185.41261 * 9 8 7 36 36 H 1.09004 * 109.52362 * 65.33194 * 9 8 7 37 37 H 1.08998 * 109.46107 * 301.34196 * 10 9 8 38 38 H 1.09002 * 109.45281 * 181.38389 * 10 9 8 39 39 H 1.09001 * 109.47217 * 264.82865 * 14 13 11 40 40 H 1.09003 * 109.47056 * 24.83281 * 14 13 11 41 41 H 1.09006 * 109.47043 * 144.83143 * 14 13 11 42 42 H 0.96998 * 120.00038 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.59025 * 6.62096 * 23 7 5 44 44 H 1.09004 * 109.58294 * 246.20000 * 23 7 5 45 45 H 1.09003 * 109.46481 * 179.97438 * 24 3 2 46 46 H 1.09004 * 109.46931 * 299.99614 * 25 24 3 47 47 H 1.09003 * 109.47350 * 59.99114 * 25 24 3 48 48 H 1.09004 * 109.46880 * 299.99841 * 26 25 24 49 49 H 1.08994 * 109.47827 * 179.97438 * 26 25 24 50 50 H 1.08995 * 109.47821 * 180.02562 * 27 26 25 51 51 H 1.08999 * 109.46890 * 59.99842 * 27 26 25 52 52 H 1.09004 * 109.46931 * 299.99584 * 28 27 26 53 53 H 1.09003 * 109.47350 * 180.02562 * 28 27 26 54 54 H 1.09007 * 109.47263 * 300.00519 * 29 24 3 55 55 H 1.09003 * 109.47485 * 60.00329 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6589 3.0124 -1.6686 8 6 2.9478 3.9371 -0.5641 9 6 2.1732 5.2384 -0.7951 10 6 2.5123 5.7900 -2.1818 11 6 2.0901 4.7803 -3.2515 12 1 1.0208 4.5870 -3.1677 13 7 2.3865 5.3225 -4.5798 14 6 3.7644 5.6646 -4.9407 15 6 1.3753 5.5097 -5.4841 16 1 0.4230 5.0218 -5.3378 17 6 1.5762 6.3219 -6.5917 18 7 2.5900 7.1609 -6.6173 19 14 0.4078 6.2241 -8.0459 20 1 -0.9679 6.5606 -7.5991 21 1 0.8374 7.1867 -9.0917 22 1 0.4245 4.8475 -8.6027 23 6 2.8636 3.4739 -3.0484 24 6 3.3588 1.2632 0.7213 25 6 4.2927 0.2892 0.0001 26 6 5.6415 0.2474 0.7209 27 6 5.4346 -0.2181 2.1636 28 6 4.5007 0.7559 2.8848 29 6 3.1514 0.7974 2.1637 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 4.0168 4.1486 -0.5347 34 1 2.6359 3.4887 0.3791 35 1 2.4527 5.9680 -0.0350 36 1 1.1029 5.0410 -0.7338 37 1 3.5860 5.9645 -2.2506 38 1 1.9812 6.7289 -2.3389 39 1 3.9351 6.7257 -4.7583 40 1 4.4550 5.0764 -4.3363 41 1 3.9286 5.4464 -5.9959 42 1 2.7302 7.7287 -7.3912 43 1 2.4960 2.7198 -3.7444 44 1 3.9256 3.6475 -3.2219 45 1 3.8023 2.2589 0.7209 46 1 3.8493 -0.7066 0.0001 47 1 4.4404 0.6211 -1.0277 48 1 6.0847 1.2433 0.7205 49 1 6.3067 -0.4468 0.2074 50 1 6.3954 -0.2475 2.6774 51 1 4.9914 -1.2139 2.1640 52 1 4.9439 1.7518 2.8845 53 1 4.3537 0.4245 3.9128 54 1 2.4861 1.4913 2.6776 55 1 2.7081 -0.1984 2.1638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027707223.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:56 Heat of formation + Delta-G solvation = -89.270472 kcal Electronic energy + Delta-G solvation = -32185.534385 eV Core-core repulsion = 28221.845641 eV Total energy + Delta-G solvation = -3963.688744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.82265 -39.78029 -38.77040 -37.87630 -36.80780 -34.19487 -32.90277 -32.84077 -31.58749 -30.49325 -28.38214 -28.09046 -27.24053 -25.93418 -25.09146 -23.52077 -23.15183 -22.57789 -21.06300 -20.62992 -19.96499 -18.83347 -18.29073 -17.68587 -17.27067 -16.96848 -16.47917 -15.99594 -15.83680 -15.60698 -15.37436 -15.31740 -15.02732 -14.93408 -14.83103 -14.46868 -14.45237 -14.15205 -13.93258 -13.72836 -13.67846 -13.12862 -12.98149 -12.91098 -12.88737 -12.74258 -12.52892 -12.35251 -12.29929 -12.14275 -11.97141 -11.93418 -11.92938 -11.79550 -11.71572 -11.47297 -11.40940 -11.21507 -11.06997 -10.87685 -10.67262 -10.20899 -9.72378 -8.84195 -7.86813 -5.28668 1.41638 1.45317 1.51610 1.55358 1.87331 2.48281 2.78350 3.25685 3.37862 3.58730 3.61938 3.75679 3.89169 3.97878 4.03704 4.06658 4.10750 4.21270 4.33249 4.34526 4.40608 4.43482 4.51463 4.51981 4.54152 4.65286 4.69183 4.70519 4.71266 4.75206 4.78982 4.82218 4.84507 4.89709 5.01018 5.06539 5.13765 5.21159 5.27956 5.30644 5.34226 5.36545 5.42461 5.42624 5.47482 5.47702 5.49212 5.60243 5.67077 5.70502 6.01909 6.27063 6.45256 7.10889 7.16273 7.84155 8.24407 9.16326 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.002934 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.109954 B = 9539.839620 C =10064.185373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.371 6.371 3 C 0.084 3.916 4 H 0.113 0.887 5 C 0.485 3.515 6 O -0.584 6.584 7 N -0.601 5.601 8 C 0.098 3.902 9 C -0.123 4.123 10 C -0.123 4.123 11 C 0.169 3.831 12 H 0.043 0.957 13 N -0.611 5.611 14 C 0.182 3.818 15 C -0.266 4.266 16 H 0.063 0.937 17 C -0.049 4.049 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.113 3.887 24 C -0.079 4.079 25 C -0.108 4.108 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.115 4.115 29 C -0.106 4.106 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.007 0.993 40 H 0.029 0.971 41 H 0.015 0.985 42 H 0.249 0.751 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.053 0.947 47 H 0.028 0.972 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.054 0.946 52 H 0.073 0.927 53 H 0.075 0.925 54 H 0.083 0.917 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 -10.486 25.920 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.288 6.288 3 C 0.023 3.977 4 H 0.131 0.869 5 C 0.274 3.726 6 O -0.464 6.464 7 N -0.335 5.335 8 C -0.023 4.023 9 C -0.162 4.162 10 C -0.162 4.162 11 C 0.061 3.939 12 H 0.061 0.939 13 N -0.334 5.334 14 C 0.037 3.963 15 C -0.396 4.396 16 H 0.081 0.919 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.792 3.208 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.212 1.212 23 C -0.012 4.012 24 C -0.098 4.098 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.156 4.156 28 C -0.153 4.153 29 C -0.143 4.143 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.047 0.953 41 H 0.034 0.966 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.071 0.929 47 H 0.047 0.953 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.073 0.927 52 H 0.092 0.908 53 H 0.093 0.907 54 H 0.101 0.899 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.359 -10.952 25.308 27.780 hybrid contribution -0.869 0.324 -2.132 2.325 sum 2.490 -10.629 23.175 25.618 Atomic orbital electron populations 1.22992 0.79870 1.04024 1.00264 1.87951 1.20990 1.25682 1.94200 1.22277 0.98652 0.86840 0.89977 0.86916 1.22136 0.76035 0.81118 0.93332 1.90677 1.52673 1.54889 1.48114 1.48288 1.64998 1.12822 1.07399 1.22297 1.01392 0.89426 0.89216 1.21921 1.00593 0.97204 0.96437 1.21940 1.01053 0.98254 0.94985 1.20682 0.96616 0.91643 0.84934 0.93880 1.44131 1.04076 1.74139 1.11054 1.20494 0.83168 0.96078 0.96517 1.19470 0.94724 1.22738 1.02715 0.91892 1.25561 1.00148 0.96836 1.01915 1.70242 1.33140 1.24668 1.29982 0.85392 0.78822 0.77002 0.79570 1.20136 1.21533 1.21171 1.21884 1.00026 0.96502 0.82792 1.21533 0.90766 1.01548 0.95927 1.21426 0.96262 0.99540 0.97394 1.21514 0.95659 1.01829 0.96309 1.21537 1.00132 0.99184 0.94742 1.21538 0.94590 1.00127 0.99025 1.21521 0.98298 1.02243 0.92262 0.91026 0.96011 0.88256 0.89311 0.86364 0.87374 0.91842 0.92204 0.93765 0.97472 0.95263 0.96580 0.94161 0.93156 0.91724 0.87288 0.92862 0.95275 0.91233 0.92629 0.91079 0.92714 0.90833 0.90676 0.89850 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.81 113.37 1.23 1.71 16 2 O -0.37 -9.15 8.54 -129.99 -1.11 -10.26 16 3 C 0.08 1.80 1.43 29.85 0.04 1.84 16 4 H 0.11 1.73 7.08 -2.39 -0.02 1.71 16 5 C 0.48 15.18 5.81 87.66 0.51 15.69 16 6 O -0.58 -24.73 15.92 15.97 0.25 -24.48 16 7 N -0.60 -17.44 2.97 -818.97 -2.43 -19.88 16 8 C 0.10 1.83 4.97 86.36 0.43 2.25 16 9 C -0.12 -2.60 6.08 30.67 0.19 -2.41 16 10 C -0.12 -4.03 5.15 30.62 0.16 -3.87 16 11 C 0.17 6.97 2.74 45.06 0.12 7.10 16 12 H 0.04 1.92 7.83 -2.39 -0.02 1.90 16 13 N -0.61 -31.40 2.82 -702.41 -1.98 -33.38 16 14 C 0.18 9.13 8.03 127.77 1.03 10.16 16 15 C -0.27 -15.27 9.66 84.03 0.81 -14.46 16 16 H 0.06 3.59 7.78 -2.91 -0.02 3.57 16 17 C -0.05 -2.85 5.05 84.86 0.43 -2.42 16 18 N -0.93 -55.84 10.54 21.65 0.23 -55.61 16 19 Si 0.96 46.70 29.58 68.60 2.03 48.73 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 23 C 0.11 4.28 5.78 86.35 0.50 4.78 16 24 C -0.08 -1.31 1.66 -10.80 -0.02 -1.32 16 25 C -0.11 -2.34 4.81 30.59 0.15 -2.19 16 26 C -0.12 -1.88 5.92 30.59 0.18 -1.70 16 27 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 28 C -0.12 -1.13 5.92 30.61 0.18 -0.95 16 29 C -0.11 -1.25 5.06 30.61 0.15 -1.09 16 30 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.12 1.38 4.67 -2.39 -0.01 1.37 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.94 7.72 -2.39 -0.02 1.92 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.01 0.38 7.50 -2.39 -0.02 0.36 16 40 H 0.03 1.25 6.35 -2.39 -0.02 1.23 16 41 H 0.02 0.87 6.99 -2.38 -0.02 0.85 16 42 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.05 2.29 7.01 -2.39 -0.02 2.28 16 44 H 0.06 2.40 6.49 -2.39 -0.02 2.39 16 45 H 0.11 1.42 5.42 -2.39 -0.01 1.41 16 46 H 0.05 1.34 7.68 -2.39 -0.02 1.32 16 47 H 0.03 0.80 7.22 -2.39 -0.02 0.78 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 53 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 54 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 55 H 0.06 0.91 7.68 -2.39 -0.02 0.89 16 Total: -1.00 -75.60 406.15 4.09 -71.51 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.84 Total: 11.56 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 6.27 Total: 11.80 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -4.19 Total: -108.87 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.86 Total: -34.74 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -75.60 4.09 -71.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027707223.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.762 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds