Wall clock time and date at job start Tue Mar 31 2020 22:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.42896 * 113.99871 * 2 1 4 4 H 1.08996 * 109.47389 * 29.99958 * 3 2 1 5 5 C 1.50696 * 109.47192 * 269.99845 * 3 2 1 6 6 O 1.21283 * 120.00186 * 346.86461 * 5 3 2 7 7 N 1.34774 * 120.00048 * 166.86656 * 5 3 2 8 8 C 1.46925 * 120.63250 * 184.06273 * 7 5 3 9 9 C 1.53198 * 108.77368 * 126.36890 * 8 7 5 10 10 C 1.53039 * 109.31273 * 54.63618 * 9 8 7 11 11 C 1.53035 * 109.53849 * 298.63836 * 10 9 8 12 12 H 1.09006 * 109.49781 * 301.37561 * 11 10 9 13 13 N 1.46502 * 109.49728 * 181.31739 * 11 10 9 14 14 C 1.46508 * 119.99788 * 299.99763 * 13 11 10 15 15 C 1.36935 * 120.00045 * 119.99696 * 13 11 10 16 16 H 1.07998 * 120.00134 * 22.36454 * 15 13 11 17 17 C 1.38817 * 120.00034 * 202.36446 * 15 13 11 18 18 N 1.31620 * 119.99770 * 15.41022 * 17 15 13 19 19 Si 1.86796 * 120.00304 * 195.40919 * 17 15 13 20 20 H 1.48505 * 109.47227 * 94.97808 * 19 17 15 21 21 H 1.48503 * 109.47259 * 214.97843 * 19 17 15 22 22 H 1.48502 * 109.46938 * 334.97867 * 19 17 15 23 23 C 1.46934 * 120.62957 * 3.78754 * 7 5 3 24 24 C 1.53005 * 109.46987 * 149.99801 * 3 2 1 25 25 C 1.52999 * 109.46979 * 54.51340 * 24 3 2 26 26 C 1.52998 * 109.47435 * 179.97438 * 25 24 3 27 27 C 1.53005 * 109.46774 * 60.00004 * 26 25 24 28 28 C 1.52999 * 109.47136 * 300.00179 * 27 26 25 29 29 C 1.52996 * 109.47075 * 60.00174 * 28 27 26 30 30 H 1.08994 * 109.46961 * 300.00312 * 1 2 3 31 31 H 1.08995 * 109.47056 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46702 * 60.00142 * 1 2 3 33 33 H 1.09002 * 109.59019 * 246.15817 * 8 7 5 34 34 H 1.09001 * 109.58702 * 6.44635 * 8 7 5 35 35 H 1.08999 * 109.49779 * 174.58978 * 9 8 7 36 36 H 1.09007 * 109.49569 * 294.68563 * 9 8 7 37 37 H 1.09001 * 109.45501 * 58.65760 * 10 9 8 38 38 H 1.08996 * 109.45619 * 178.61206 * 10 9 8 39 39 H 1.08998 * 109.46958 * 90.47256 * 14 13 11 40 40 H 1.08997 * 109.46497 * 210.47619 * 14 13 11 41 41 H 1.08998 * 109.46860 * 330.47591 * 14 13 11 42 42 H 0.97007 * 120.00241 * 180.02562 * 18 17 15 43 43 H 1.08995 * 109.58561 * 353.41430 * 23 7 5 44 44 H 1.08996 * 109.58403 * 113.84449 * 23 7 5 45 45 H 1.08995 * 109.46987 * 174.51645 * 24 3 2 46 46 H 1.09000 * 109.47375 * 300.00450 * 25 24 3 47 47 H 1.08999 * 109.47197 * 60.00294 * 25 24 3 48 48 H 1.09000 * 109.47231 * 300.00568 * 26 25 24 49 49 H 1.08998 * 109.47630 * 180.02562 * 26 25 24 50 50 H 1.09004 * 109.46867 * 180.02562 * 27 26 25 51 51 H 1.08995 * 109.47094 * 60.00645 * 27 26 25 52 52 H 1.09000 * 109.47375 * 299.99746 * 28 27 26 53 53 H 1.09003 * 109.46514 * 179.97438 * 28 27 26 54 54 H 1.08998 * 109.47270 * 179.97438 * 29 28 27 55 55 H 1.09008 * 109.47165 * 59.99789 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 2.1227 0.9709 -2.3335 7 7 2.4996 3.0564 -1.6772 8 6 2.6139 3.5375 -3.0608 9 6 1.6831 4.7406 -3.2429 10 6 2.0058 5.7953 -2.1820 11 6 1.7698 5.2086 -0.7885 12 1 0.7330 4.8833 -0.7016 13 7 2.0487 6.2287 0.2253 14 6 3.3833 6.8266 0.3149 15 6 1.0622 6.6234 1.0890 16 1 0.2217 5.9733 1.2823 17 6 1.1424 7.8591 1.7164 18 7 1.9804 8.7706 1.2699 19 14 0.0610 8.2284 3.1941 20 1 0.8135 7.9424 4.4420 21 1 -0.3354 9.6594 3.1721 22 1 -1.1547 7.3771 3.1429 23 6 2.6959 4.0120 -0.5785 24 6 3.3590 1.2632 0.7213 25 6 4.2448 0.1907 0.0841 26 6 5.5937 0.1489 0.8049 27 6 5.3725 -0.1837 2.2819 28 6 4.4867 0.8888 2.9191 29 6 3.1379 0.9306 2.1983 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 -0.8900 33 1 3.6427 3.8380 -3.2594 34 1 2.3260 2.7427 -3.7489 35 1 1.8291 5.1665 -4.2356 36 1 0.6473 4.4191 -3.1331 37 1 3.0487 6.0982 -2.2767 38 1 1.3616 6.6628 -2.3248 39 1 3.4270 7.7138 -0.3168 40 1 3.5874 7.1060 1.3485 41 1 4.1280 6.1048 -0.0203 42 1 2.0368 9.6340 1.7085 43 1 2.4597 3.5311 0.3706 44 1 3.7315 4.3520 -0.5706 45 1 3.8466 2.2344 0.6371 46 1 3.7571 -0.7804 0.1683 47 1 4.4027 0.4279 -0.9680 48 1 6.0811 1.1201 0.7203 49 1 6.2249 -0.6149 0.3507 50 1 6.3335 -0.2131 2.7956 51 1 4.8851 -1.1550 2.3666 52 1 4.9742 1.8600 2.8345 53 1 4.3288 0.6515 3.9712 54 1 2.5066 1.6943 2.6525 55 1 2.6504 -0.0408 2.2829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027707224.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:01 Heat of formation + Delta-G solvation = -91.353588 kcal Electronic energy + Delta-G solvation = -32680.589793 eV Core-core repulsion = 28716.810718 eV Total energy + Delta-G solvation = -3963.779074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81985 -39.79139 -38.82636 -37.92236 -36.58505 -34.18505 -33.43561 -32.46544 -31.62421 -30.39654 -28.42660 -28.00431 -27.27346 -25.89470 -25.21281 -23.55418 -23.10855 -22.50120 -21.11960 -20.65364 -19.96453 -18.75592 -18.35695 -17.71167 -17.18770 -16.87558 -16.62878 -15.91983 -15.83732 -15.70893 -15.47726 -15.14260 -15.09321 -14.93506 -14.86805 -14.53811 -14.43653 -14.15300 -13.95734 -13.69536 -13.60415 -13.16279 -13.00875 -12.89899 -12.83199 -12.75654 -12.50667 -12.33407 -12.27974 -12.09472 -12.02646 -11.95553 -11.93049 -11.80961 -11.65082 -11.55444 -11.41767 -11.28794 -11.12521 -10.91274 -10.62633 -10.21585 -9.73488 -8.73634 -7.81813 -5.27533 1.47759 1.49143 1.50629 1.58077 1.85907 2.52466 2.74092 3.29203 3.32810 3.61633 3.67458 3.74659 3.87391 3.91132 4.00023 4.07076 4.11047 4.23018 4.30650 4.34893 4.39496 4.41751 4.48735 4.49834 4.50848 4.59967 4.64948 4.68566 4.68998 4.76107 4.76792 4.79059 4.87460 4.93340 4.98505 5.02515 5.07866 5.17884 5.26175 5.28562 5.30829 5.32537 5.39249 5.43375 5.44198 5.45380 5.48249 5.62371 5.67510 5.75535 5.98098 6.29839 6.38746 7.09007 7.17414 7.88439 8.31852 9.22087 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.004162 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.589179 B = 6725.725503 C = 7816.939443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.366 6.366 3 C 0.080 3.920 4 H 0.090 0.910 5 C 0.496 3.504 6 O -0.568 6.568 7 N -0.601 5.601 8 C 0.112 3.888 9 C -0.118 4.118 10 C -0.123 4.123 11 C 0.164 3.836 12 H 0.052 0.948 13 N -0.603 5.603 14 C 0.177 3.823 15 C -0.260 4.260 16 H 0.070 0.930 17 C -0.046 4.046 18 N -0.934 5.934 19 Si 0.960 3.040 20 H -0.286 1.286 21 H -0.299 1.299 22 H -0.269 1.269 23 C 0.103 3.897 24 C -0.077 4.077 25 C -0.101 4.101 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.118 4.118 29 C -0.108 4.108 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.042 0.958 39 H -0.003 1.003 40 H 0.022 0.978 41 H 0.033 0.967 42 H 0.247 0.753 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.063 0.937 52 H 0.060 0.940 53 H 0.073 0.927 54 H 0.063 0.937 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 -16.349 -1.148 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.283 6.283 3 C 0.019 3.981 4 H 0.107 0.893 5 C 0.284 3.716 6 O -0.447 6.447 7 N -0.335 5.335 8 C -0.010 4.010 9 C -0.157 4.157 10 C -0.163 4.163 11 C 0.056 3.944 12 H 0.071 0.929 13 N -0.326 5.326 14 C 0.033 3.967 15 C -0.390 4.390 16 H 0.088 0.912 17 C -0.242 4.242 18 N -0.581 5.581 19 Si 0.789 3.211 20 H -0.213 1.213 21 H -0.227 1.227 22 H -0.194 1.194 23 C -0.021 4.021 24 C -0.095 4.095 25 C -0.139 4.139 26 C -0.154 4.154 27 C -0.153 4.153 28 C -0.155 4.155 29 C -0.145 4.145 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.016 0.984 40 H 0.041 0.959 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.081 0.919 52 H 0.079 0.921 53 H 0.092 0.908 54 H 0.082 0.918 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.200 -16.792 -1.553 17.379 hybrid contribution -0.938 1.254 0.483 1.638 sum 3.263 -15.539 -1.070 15.913 Atomic orbital electron populations 1.23012 0.79896 1.04227 1.00139 1.87941 1.20899 1.25142 1.94348 1.22175 0.98127 0.86546 0.91268 0.89266 1.21646 0.75741 0.81598 0.92600 1.90634 1.52631 1.53608 1.47818 1.48256 1.69172 1.08089 1.08028 1.21670 1.00417 0.96673 0.82276 1.21831 0.99231 0.94881 0.99771 1.21946 1.01161 0.97855 0.95332 1.20638 0.96835 0.88495 0.88390 0.92946 1.44065 1.08400 1.44373 1.35731 1.20500 0.84074 0.93643 0.98520 1.19504 1.03078 0.98526 1.17883 0.91208 1.25635 1.00564 0.95284 1.02669 1.70231 1.41442 1.05027 1.41390 0.85353 0.78925 0.76566 0.80222 1.21320 1.22656 1.19376 1.22277 1.00775 0.89890 0.89148 1.21343 0.91591 1.00639 0.95964 1.21365 0.95848 0.98849 0.97800 1.21533 0.96016 1.01841 0.96012 1.21518 1.00020 0.98811 0.94908 1.21526 0.95011 0.99445 0.99554 1.21512 0.98245 1.02274 0.92509 0.92380 0.87504 0.95280 0.90295 0.89769 0.88834 0.92467 0.92318 0.93912 0.98440 0.95909 0.94896 0.94359 0.89373 0.90758 0.89562 0.91796 0.94290 0.92124 0.91402 0.90973 0.91857 0.92132 0.90833 0.91829 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.81 113.37 1.23 1.74 16 2 O -0.37 -9.94 8.58 -130.28 -1.12 -11.06 16 3 C 0.08 2.15 1.35 29.85 0.04 2.19 16 4 H 0.09 2.32 6.79 -2.39 -0.02 2.31 16 5 C 0.50 15.37 5.99 87.66 0.53 15.89 16 6 O -0.57 -20.96 15.98 15.66 0.25 -20.71 16 7 N -0.60 -17.45 2.98 -819.73 -2.44 -19.90 16 8 C 0.11 2.95 6.42 86.36 0.55 3.51 16 9 C -0.12 -3.13 6.08 30.67 0.19 -2.95 16 10 C -0.12 -4.12 5.15 30.62 0.16 -3.96 16 11 C 0.16 6.03 2.73 44.92 0.12 6.15 16 12 H 0.05 2.04 7.86 -2.38 -0.02 2.02 16 13 N -0.60 -27.47 2.81 -703.14 -1.98 -29.44 16 14 C 0.18 8.04 8.08 127.77 1.03 9.07 16 15 C -0.26 -13.30 9.58 84.04 0.80 -12.50 16 16 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 17 C -0.05 -2.44 5.01 84.86 0.43 -2.02 16 18 N -0.93 -52.98 10.85 21.65 0.23 -52.75 16 19 Si 0.96 43.15 29.58 68.60 2.03 45.18 16 20 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 C 0.10 3.13 4.55 86.22 0.39 3.52 16 24 C -0.08 -1.81 1.61 -10.79 -0.02 -1.83 16 25 C -0.10 -2.41 4.82 30.59 0.15 -2.26 16 26 C -0.12 -2.24 5.92 30.60 0.18 -2.06 16 27 C -0.12 -1.94 5.92 30.60 0.18 -1.76 16 28 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 29 C -0.11 -2.23 5.10 30.59 0.16 -2.07 16 30 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 31 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.32 7.03 -2.39 -0.02 2.30 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.06 1.95 7.72 -2.39 -0.02 1.93 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.00 -0.14 7.62 -2.39 -0.02 -0.16 16 40 H 0.02 1.12 7.05 -2.39 -0.02 1.11 16 41 H 0.03 1.23 6.34 -2.39 -0.02 1.22 16 42 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 43 H 0.09 2.60 4.81 -2.39 -0.01 2.59 16 44 H 0.07 2.22 6.46 -2.39 -0.02 2.20 16 45 H 0.09 2.10 6.12 -2.39 -0.01 2.08 16 46 H 0.06 1.64 7.55 -2.39 -0.02 1.62 16 47 H 0.04 1.08 7.40 -2.39 -0.02 1.06 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 55 H 0.07 1.46 7.84 -2.38 -0.02 1.44 16 Total: -1.00 -63.08 407.80 4.11 -58.97 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.84 Total: 20.98 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.30 Total: 8.72 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -4.18 Total: -102.09 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.87 Total: -31.77 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -63.08 4.11 -58.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027707224.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.384 kcal (2) G-P(sol) polarization free energy of solvation -63.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds