Wall clock time and date at job start Tue Mar 31 2020 22:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00082 * 2 1 4 4 H 1.08999 * 109.47119 * 16.95084 * 3 2 1 5 5 C 1.50698 * 109.47211 * 136.95248 * 3 2 1 6 6 O 1.21283 * 120.00042 * 17.89578 * 5 3 2 7 7 N 1.34773 * 119.99891 * 197.90199 * 5 3 2 8 8 C 1.46923 * 120.63298 * 355.56568 * 7 5 3 9 9 C 1.53192 * 108.77697 * 233.63259 * 8 7 5 10 10 C 1.53041 * 109.31403 * 305.36237 * 9 8 7 11 11 C 1.53036 * 109.53405 * 61.36549 * 10 9 8 12 12 H 1.09001 * 109.52929 * 58.60498 * 11 10 9 13 13 N 1.46505 * 109.49369 * 178.68667 * 11 10 9 14 14 C 1.46497 * 120.00237 * 59.83699 * 13 11 10 15 15 C 1.36942 * 119.99786 * 239.83298 * 13 11 10 16 16 H 1.08001 * 120.00149 * 330.38298 * 15 13 11 17 17 C 1.38810 * 119.99654 * 150.65097 * 15 13 11 18 18 N 1.31618 * 120.00205 * 0.19643 * 17 15 13 19 19 Si 1.86803 * 119.99795 * 180.19966 * 17 15 13 20 20 H 1.48505 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47061 * 119.99946 * 19 17 15 22 22 H 1.48497 * 109.47272 * 240.00135 * 19 17 15 23 23 C 1.46924 * 120.63347 * 175.59050 * 7 5 3 24 24 C 1.53001 * 109.47086 * 256.95420 * 3 2 1 25 25 C 1.52992 * 109.47397 * 63.83338 * 24 3 2 26 26 C 1.53003 * 109.47066 * 180.02562 * 25 24 3 27 27 C 1.52996 * 109.47239 * 59.99994 * 26 25 24 28 28 C 1.53000 * 109.47322 * 299.99919 * 27 26 25 29 29 C 1.53003 * 109.46897 * 59.99872 * 28 27 26 30 30 H 1.08998 * 109.46981 * 303.37831 * 1 2 3 31 31 H 1.09001 * 109.47298 * 63.38195 * 1 2 3 32 32 H 1.08996 * 109.46963 * 183.38325 * 1 2 3 33 33 H 1.09003 * 109.58717 * 353.42234 * 8 7 5 34 34 H 1.09001 * 109.59159 * 113.84103 * 8 7 5 35 35 H 1.09003 * 109.49854 * 65.31992 * 9 8 7 36 36 H 1.09003 * 109.49721 * 185.40898 * 9 8 7 37 37 H 1.08998 * 109.45595 * 301.34652 * 10 9 8 38 38 H 1.08994 * 109.45968 * 181.38738 * 10 9 8 39 39 H 1.08999 * 109.46946 * 273.12897 * 14 13 11 40 40 H 1.09004 * 109.46899 * 33.13207 * 14 13 11 41 41 H 1.09001 * 109.47017 * 153.13220 * 14 13 11 42 42 H 0.96998 * 119.99795 * 179.97438 * 18 17 15 43 43 H 1.09006 * 109.58434 * 6.57606 * 23 7 5 44 44 H 1.09000 * 109.70629 * 246.22626 * 23 7 5 45 45 H 1.08996 * 109.46811 * 183.83630 * 24 3 2 46 46 H 1.09005 * 109.47189 * 300.00110 * 25 24 3 47 47 H 1.08999 * 109.47142 * 59.99600 * 25 24 3 48 48 H 1.08995 * 109.46765 * 299.99555 * 26 25 24 49 49 H 1.09005 * 109.46639 * 179.97438 * 26 25 24 50 50 H 1.08995 * 109.46998 * 179.97438 * 27 26 25 51 51 H 1.09005 * 109.47076 * 60.00026 * 27 26 25 52 52 H 1.08995 * 109.46908 * 300.00577 * 28 27 26 53 53 H 1.08996 * 109.47794 * 179.97438 * 28 27 26 54 54 H 1.08997 * 109.47261 * 180.02562 * 29 28 27 55 55 H 1.09005 * 109.47065 * 60.00160 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2600 2.0372 0.2996 5 6 3.1631 1.3421 0.9698 6 8 3.6674 0.3073 1.3517 7 7 3.6336 2.5247 1.4130 8 6 3.0985 3.7879 0.8869 9 6 4.2635 4.6439 0.3801 10 6 5.2910 4.8151 1.5013 11 6 5.8390 3.4450 1.9068 12 1 6.2941 2.9638 1.0411 13 7 6.8453 3.6127 2.9583 14 6 6.4784 4.2404 4.2300 15 6 8.1290 3.1824 2.7523 16 1 8.3191 2.3437 2.0991 17 6 9.1852 3.8209 3.3875 18 7 8.9527 4.8373 4.1908 19 14 10.9368 3.2376 3.1023 20 1 10.9286 2.0874 2.1629 21 1 11.7387 4.3445 2.5218 22 1 11.5353 2.8176 4.3947 23 6 4.6919 2.5754 2.4309 24 6 2.5152 1.6389 -1.4053 25 6 1.3312 1.6958 -2.3725 26 6 1.8362 2.0286 -3.7779 27 6 2.8178 0.9482 -4.2363 28 6 4.0019 0.8914 -3.2690 29 6 3.4968 0.5585 -1.8636 30 1 -0.3633 0.5654 0.8581 31 1 -0.3634 0.4604 -0.9187 32 1 -0.3633 -1.0258 0.0606 33 1 2.4130 3.5803 0.0652 34 1 2.5718 4.3198 1.6792 35 1 4.7329 4.1518 -0.4717 36 1 3.8907 5.6219 0.0757 37 1 4.8145 5.2849 2.3618 38 1 6.1091 5.4444 1.1510 39 1 6.5815 5.3221 4.1443 40 1 5.4452 3.9920 4.4731 41 1 7.1354 3.8742 5.0189 42 1 9.6908 5.2832 4.6349 43 1 5.0578 1.5677 2.6280 44 1 4.2969 3.0070 3.3506 45 1 3.0190 2.6054 -1.3905 46 1 0.8273 0.7292 -2.3873 47 1 0.6316 2.4651 -2.0457 48 1 2.3402 2.9949 -3.7634 49 1 0.9926 2.0686 -4.4671 50 1 3.1772 1.1851 -5.2376 51 1 2.3137 -0.0182 -4.2507 52 1 4.5058 1.8577 -3.2545 53 1 4.7010 0.1214 -3.5952 54 1 4.3403 0.5184 -1.1744 55 1 2.9927 -0.4079 -1.8781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027707225.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:05 Heat of formation + Delta-G solvation = -91.709828 kcal Electronic energy + Delta-G solvation = -32338.099827 eV Core-core repulsion = 28374.305305 eV Total energy + Delta-G solvation = -3963.794522 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.78275 -39.88939 -38.71275 -37.84611 -36.78473 -34.12004 -32.89575 -32.81431 -31.64342 -30.52227 -28.64377 -28.06070 -27.04127 -25.87425 -25.07421 -23.51006 -23.05504 -22.66809 -21.15978 -20.64572 -19.87677 -18.81452 -18.34081 -17.58596 -17.20787 -17.08023 -16.46926 -15.92887 -15.87474 -15.70510 -15.35640 -15.25221 -15.13601 -14.98128 -14.80303 -14.45560 -14.35603 -14.08968 -13.93842 -13.72069 -13.64858 -13.16404 -13.03059 -12.91342 -12.82679 -12.74536 -12.61060 -12.41011 -12.28923 -12.09518 -11.99383 -11.96621 -11.88466 -11.78793 -11.69847 -11.44546 -11.39867 -11.20230 -11.09104 -10.77375 -10.65392 -10.24351 -9.72302 -8.68073 -7.89001 -5.40919 1.41837 1.42962 1.53398 1.55158 1.77660 2.46620 2.92140 3.26102 3.41400 3.59112 3.63361 3.75982 3.89199 3.98453 4.02572 4.06712 4.10549 4.21657 4.32224 4.35916 4.38252 4.41178 4.52958 4.54706 4.59065 4.60735 4.66996 4.69015 4.72198 4.76436 4.79046 4.86735 4.88174 4.92205 5.02403 5.03633 5.14361 5.19443 5.25924 5.30005 5.31432 5.33348 5.40550 5.43023 5.45219 5.48835 5.50456 5.62085 5.62708 5.71805 6.10355 6.34666 6.46627 7.13484 7.17506 7.83095 8.28190 9.14753 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.003168 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.244111 B = 8836.998954 C = 9345.698069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.385 6.385 3 C 0.087 3.913 4 H 0.118 0.882 5 C 0.501 3.499 6 O -0.580 6.580 7 N -0.603 5.603 8 C 0.099 3.901 9 C -0.122 4.122 10 C -0.121 4.121 11 C 0.170 3.830 12 H 0.039 0.961 13 N -0.611 5.611 14 C 0.181 3.819 15 C -0.270 4.270 16 H 0.055 0.945 17 C -0.040 4.040 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.288 1.288 23 C 0.113 3.887 24 C -0.095 4.095 25 C -0.110 4.110 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.118 4.118 29 C -0.105 4.105 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.001 0.999 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.250 0.750 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.061 0.939 53 H 0.052 0.948 54 H 0.021 0.979 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.178 -0.738 -16.282 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.136 0.864 5 C 0.290 3.710 6 O -0.459 6.459 7 N -0.337 5.337 8 C -0.022 4.022 9 C -0.161 4.161 10 C -0.160 4.160 11 C 0.062 3.938 12 H 0.058 0.942 13 N -0.334 5.334 14 C 0.036 3.964 15 C -0.400 4.400 16 H 0.073 0.927 17 C -0.236 4.236 18 N -0.577 5.577 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.215 1.215 23 C -0.012 4.012 24 C -0.114 4.114 25 C -0.147 4.147 26 C -0.152 4.152 27 C -0.154 4.154 28 C -0.156 4.156 29 C -0.143 4.143 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.079 0.921 53 H 0.071 0.929 54 H 0.040 0.960 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.699 -1.372 -15.972 27.789 hybrid contribution 1.745 -0.338 0.702 1.911 sum -20.954 -1.710 -15.271 25.984 Atomic orbital electron populations 1.23236 0.78940 1.04063 1.01710 1.88026 1.21660 1.25832 1.94788 1.22118 0.93614 0.87499 0.94197 0.86424 1.21431 0.85216 0.82810 0.81524 1.90678 1.60805 1.34560 1.59808 1.48232 1.37906 1.06738 1.40816 1.22210 0.96475 0.83029 1.00522 1.21896 0.95392 1.01509 0.97258 1.21893 0.98280 0.96989 0.98857 1.20689 0.88278 0.94652 0.90195 0.94230 1.44031 1.06444 1.70547 1.12385 1.20512 0.94069 0.94787 0.87015 1.19438 0.84029 1.09809 1.26770 0.92701 1.25858 1.01545 0.96660 0.99510 1.70187 1.30835 1.24062 1.32611 0.85231 0.80431 0.77543 0.77419 1.19841 1.21112 1.21481 1.21887 0.88328 1.00183 0.90819 1.21663 0.98037 0.99644 0.92021 1.21657 0.95886 1.02871 0.94268 1.21519 0.99115 0.98631 0.95976 1.21526 0.95851 0.99713 0.98323 1.21531 0.98316 1.01331 0.94407 1.21360 0.97476 0.99074 0.96376 0.93037 0.91096 0.88923 0.86577 0.89199 0.92063 0.87382 0.92180 0.93944 0.98024 0.96059 0.95461 0.94014 0.93174 0.91357 0.88818 0.91411 0.89268 0.91328 0.90205 0.91248 0.92276 0.92071 0.92891 0.95974 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.40 113.37 1.18 1.41 16 2 O -0.38 -9.42 8.80 -130.58 -1.15 -10.56 16 3 C 0.09 1.88 1.51 29.85 0.05 1.92 16 4 H 0.12 1.65 6.64 -2.39 -0.02 1.64 16 5 C 0.50 16.19 5.96 87.66 0.52 16.71 16 6 O -0.58 -25.38 15.83 15.36 0.24 -25.13 16 7 N -0.60 -17.97 2.97 -818.91 -2.43 -20.40 16 8 C 0.10 1.90 5.67 86.36 0.49 2.39 16 9 C -0.12 -2.70 6.08 30.67 0.19 -2.52 16 10 C -0.12 -4.09 5.14 30.62 0.16 -3.93 16 11 C 0.17 7.18 2.75 45.07 0.12 7.31 16 12 H 0.04 1.84 7.89 -2.39 -0.02 1.82 16 13 N -0.61 -31.78 2.81 -702.34 -1.97 -33.75 16 14 C 0.18 9.11 8.07 127.77 1.03 10.14 16 15 C -0.27 -15.64 9.53 84.03 0.80 -14.84 16 16 H 0.06 3.22 7.83 -2.91 -0.02 3.20 16 17 C -0.04 -2.30 5.28 84.86 0.45 -1.85 16 18 N -0.93 -55.42 10.52 21.65 0.23 -55.19 16 19 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 C 0.11 4.34 5.79 86.36 0.50 4.84 16 24 C -0.09 -1.72 1.65 -10.79 -0.02 -1.74 16 25 C -0.11 -1.25 4.37 30.59 0.13 -1.12 16 26 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 27 C -0.12 -1.66 5.92 30.59 0.18 -1.48 16 28 C -0.12 -2.35 5.92 30.60 0.18 -2.16 16 29 C -0.11 -2.59 4.82 30.60 0.15 -2.44 16 30 H 0.05 0.62 8.06 -2.39 -0.02 0.60 16 31 H 0.07 0.64 6.12 -2.39 -0.01 0.63 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.41 4.53 -2.39 -0.01 1.40 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 2.00 7.71 -2.39 -0.02 1.98 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.00 0.08 7.76 -2.39 -0.02 0.06 16 40 H 0.02 0.92 6.35 -2.39 -0.02 0.91 16 41 H 0.03 1.51 6.85 -2.39 -0.02 1.49 16 42 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.05 2.31 7.00 -2.38 -0.02 2.30 16 44 H 0.07 2.54 6.48 -2.39 -0.02 2.53 16 45 H 0.09 1.57 6.37 -2.39 -0.02 1.55 16 46 H 0.07 0.84 6.31 -2.38 -0.02 0.83 16 47 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 52 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.02 0.71 7.20 -2.39 -0.02 0.70 16 55 H 0.06 1.56 7.58 -2.38 -0.02 1.54 16 Total: -1.00 -77.02 403.27 4.08 -72.94 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.85 Total: 11.93 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 6.29 Total: 11.60 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -4.18 Total: -109.35 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.91 Total: -35.70 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -77.02 4.08 -72.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027707225.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.768 kcal (2) G-P(sol) polarization free energy of solvation -77.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds