Wall clock time and date at job start Tue Mar 31 2020 22:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 113.99669 * 2 1 4 4 H 1.08993 * 109.47614 * 6.83753 * 3 2 1 5 5 C 1.50702 * 109.46623 * 126.83461 * 3 2 1 6 6 O 1.21274 * 120.00553 * 11.88687 * 5 3 2 7 7 N 1.34778 * 119.99770 * 191.88932 * 5 3 2 8 8 C 1.46922 * 120.63241 * 355.93958 * 7 5 3 9 9 C 1.53187 * 108.77899 * 126.41674 * 8 7 5 10 10 C 1.53042 * 109.31708 * 54.63325 * 9 8 7 11 11 C 1.53039 * 109.53665 * 298.64207 * 10 9 8 12 12 H 1.09010 * 109.49699 * 301.40922 * 11 10 9 13 13 N 1.46495 * 109.49994 * 181.31511 * 11 10 9 14 14 C 1.46503 * 119.99784 * 299.99573 * 13 11 10 15 15 C 1.36933 * 120.00391 * 119.99460 * 13 11 10 16 16 H 1.08007 * 120.00046 * 23.62227 * 15 13 11 17 17 C 1.38811 * 120.00275 * 203.61394 * 15 13 11 18 18 N 1.31620 * 119.99845 * 10.09350 * 17 15 13 19 19 Si 1.86802 * 120.00208 * 190.08167 * 17 15 13 20 20 H 1.48503 * 109.47077 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46762 * 120.00572 * 19 17 15 22 22 H 1.48493 * 109.47261 * 240.00294 * 19 17 15 23 23 C 1.46932 * 120.63105 * 175.96231 * 7 5 3 24 24 C 1.52996 * 109.47269 * 246.82756 * 3 2 1 25 25 C 1.53003 * 109.46990 * 65.26235 * 24 3 2 26 26 C 1.53000 * 109.47522 * 179.97438 * 25 24 3 27 27 C 1.53002 * 109.46852 * 59.99873 * 26 25 24 28 28 C 1.53003 * 109.47161 * 300.00348 * 27 26 25 29 29 C 1.52998 * 109.47004 * 60.00102 * 28 27 26 30 30 H 1.09001 * 109.46931 * 184.69523 * 1 2 3 31 31 H 1.08996 * 109.46882 * 304.69422 * 1 2 3 32 32 H 1.08998 * 109.47144 * 64.69716 * 1 2 3 33 33 H 1.09001 * 109.58887 * 6.62165 * 8 7 5 34 34 H 1.09005 * 109.70412 * 246.27561 * 8 7 5 35 35 H 1.08999 * 109.49746 * 294.68192 * 9 8 7 36 36 H 1.09000 * 109.53038 * 174.60461 * 9 8 7 37 37 H 1.08989 * 109.46399 * 178.61689 * 10 9 8 38 38 H 1.08998 * 109.45641 * 58.65691 * 10 9 8 39 39 H 1.09002 * 109.46786 * 94.09180 * 14 13 11 40 40 H 1.08998 * 109.47421 * 214.09341 * 14 13 11 41 41 H 1.08999 * 109.47189 * 334.09775 * 14 13 11 42 42 H 0.96999 * 120.00239 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.58530 * 113.79543 * 23 7 5 44 44 H 1.08993 * 109.58282 * 353.37249 * 23 7 5 45 45 H 1.09005 * 109.47465 * 185.25801 * 24 3 2 46 46 H 1.08998 * 109.47290 * 299.99924 * 25 24 3 47 47 H 1.09007 * 109.47052 * 59.99967 * 25 24 3 48 48 H 1.08998 * 109.47062 * 300.00414 * 26 25 24 49 49 H 1.08992 * 109.47282 * 179.97438 * 26 25 24 50 50 H 1.08997 * 109.47431 * 179.97438 * 27 26 25 51 51 H 1.09006 * 109.47111 * 60.00314 * 27 26 25 52 52 H 1.08997 * 109.46872 * 299.99456 * 28 27 26 53 53 H 1.09008 * 109.46583 * 179.97438 * 28 27 26 54 54 H 1.09006 * 109.46656 * 180.02562 * 29 28 27 55 55 H 1.08991 * 109.47625 * 60.00365 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2259 2.0523 0.1223 5 6 2.9926 1.4178 1.1372 6 8 3.3397 0.4239 1.7393 7 7 3.4856 2.6230 1.4852 8 6 3.1441 3.8236 0.7103 9 6 2.5881 4.8850 1.6647 10 6 3.5943 5.1294 2.7917 11 6 3.8051 3.8343 3.5793 12 1 2.8515 3.4953 3.9842 13 7 4.7444 4.0770 4.6770 14 6 6.1039 4.5407 4.3887 15 6 4.3518 3.8705 5.9725 16 1 3.5372 3.1949 6.1887 17 6 5.0006 4.5292 7.0078 18 7 5.8532 5.4957 6.7409 19 14 4.6635 4.0441 8.7800 20 1 3.6731 2.9380 8.8106 21 1 5.9266 3.5949 9.4190 22 1 4.1235 5.2133 9.5191 23 6 4.3750 2.7610 2.6466 24 6 2.7361 1.5405 -1.3261 25 6 1.7186 1.5566 -2.4686 26 6 2.4444 1.7923 -3.7947 27 6 3.4565 0.6690 -4.0289 28 6 4.4740 0.6530 -2.8863 29 6 3.7481 0.4172 -1.5603 30 1 -0.3633 -1.0242 0.0841 31 1 -0.3633 0.5849 0.8449 32 1 -0.3633 0.4392 -0.9290 33 1 2.3913 3.5741 -0.0374 34 1 4.0364 4.2081 0.2161 35 1 1.6459 4.5362 2.0876 36 1 2.4202 5.8135 1.1192 37 1 3.2119 5.9019 3.4587 38 1 4.5438 5.4545 2.3664 39 1 6.1367 5.6286 4.4473 40 1 6.7947 4.1166 5.1175 41 1 6.3917 4.2219 3.3869 42 1 6.3064 5.9563 7.4644 43 1 5.3691 3.0579 2.3122 44 1 4.4342 1.8104 3.1764 45 1 3.2574 2.4972 -1.2904 46 1 1.1974 0.6000 -2.5044 47 1 0.9979 2.3572 -2.3020 48 1 2.9654 2.7491 -3.7587 49 1 1.7196 1.8033 -4.6087 50 1 3.9733 0.8366 -4.9738 51 1 2.9355 -0.2878 -4.0649 52 1 4.9950 1.6097 -2.8504 53 1 5.1948 -0.1477 -3.0530 54 1 4.4730 0.4062 -0.7463 55 1 3.2272 -0.5395 -1.5962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027707226.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:09 Heat of formation + Delta-G solvation = -91.848924 kcal Electronic energy + Delta-G solvation = -32090.921224 eV Core-core repulsion = 28127.120670 eV Total energy + Delta-G solvation = -3963.800554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.77410 -39.86054 -38.72129 -37.87355 -36.79478 -34.14307 -32.88408 -32.80933 -31.61491 -30.50942 -28.56508 -28.07452 -27.10377 -25.89699 -25.08914 -23.49156 -23.13739 -22.60975 -21.05254 -20.65035 -19.94985 -18.82158 -18.27948 -17.62547 -17.26304 -17.00205 -16.46999 -16.00414 -15.82368 -15.64499 -15.34056 -15.29281 -15.06016 -14.98695 -14.81671 -14.47494 -14.43925 -14.09109 -13.93224 -13.71073 -13.66012 -13.14447 -13.00486 -12.89641 -12.84855 -12.74413 -12.58205 -12.39824 -12.28829 -12.08043 -12.01460 -11.94656 -11.89257 -11.78943 -11.68193 -11.42351 -11.39876 -11.18702 -11.13559 -10.81783 -10.70168 -10.22298 -9.71500 -8.76620 -7.85753 -5.35282 1.41805 1.43775 1.53722 1.55824 1.79612 2.47585 2.88541 3.27269 3.40924 3.58947 3.61912 3.76113 3.89247 3.98835 4.02786 4.05728 4.10371 4.21439 4.33512 4.35359 4.39931 4.42433 4.52956 4.54106 4.57513 4.63190 4.68985 4.69901 4.71956 4.75885 4.79659 4.84881 4.85653 4.90444 5.01713 5.05352 5.14180 5.20508 5.27257 5.28473 5.33326 5.34754 5.41730 5.42714 5.46512 5.48193 5.49709 5.62143 5.64323 5.71307 6.07924 6.30775 6.46244 7.12252 7.17245 7.83610 8.26351 9.16693 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.002836 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.770913 B = 9872.089160 C =10288.368468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.381 6.381 3 C 0.085 3.915 4 H 0.115 0.885 5 C 0.497 3.503 6 O -0.581 6.581 7 N -0.602 5.602 8 C 0.099 3.901 9 C -0.123 4.123 10 C -0.122 4.122 11 C 0.169 3.831 12 H 0.043 0.957 13 N -0.610 5.610 14 C 0.181 3.819 15 C -0.266 4.266 16 H 0.060 0.940 17 C -0.047 4.047 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.114 3.886 24 C -0.091 4.091 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.118 4.118 28 C -0.116 4.116 29 C -0.106 4.106 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.009 0.991 40 H 0.013 0.987 41 H 0.028 0.972 42 H 0.249 0.751 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.099 0.901 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.070 0.930 51 H 0.056 0.944 52 H 0.065 0.935 53 H 0.055 0.945 54 H 0.026 0.974 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 -3.337 -26.274 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.299 6.299 3 C 0.024 3.976 4 H 0.133 0.867 5 C 0.286 3.714 6 O -0.460 6.460 7 N -0.336 5.336 8 C -0.022 4.022 9 C -0.161 4.161 10 C -0.162 4.162 11 C 0.061 3.939 12 H 0.062 0.938 13 N -0.333 5.333 14 C 0.037 3.963 15 C -0.396 4.396 16 H 0.078 0.922 17 C -0.243 4.243 18 N -0.580 5.580 19 Si 0.795 3.205 20 H -0.198 1.198 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.011 4.011 24 C -0.110 4.110 25 C -0.146 4.146 26 C -0.152 4.152 27 C -0.155 4.155 28 C -0.154 4.154 29 C -0.144 4.144 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.031 0.969 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.103 0.897 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.075 0.925 52 H 0.084 0.916 53 H 0.074 0.926 54 H 0.045 0.955 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.865 -3.954 -25.846 28.314 hybrid contribution 0.321 -0.195 2.037 2.071 sum -10.544 -4.149 -23.809 26.368 Atomic orbital electron populations 1.23162 0.79191 1.03948 1.01356 1.88006 1.21435 1.25869 1.94611 1.22161 0.95246 0.87495 0.92723 0.86743 1.21610 0.82231 0.82390 0.85162 1.90673 1.61215 1.37866 1.56239 1.48239 1.48036 1.08024 1.29329 1.22229 1.02266 0.83843 0.93825 1.21915 0.97977 1.00100 0.96154 1.21924 0.99700 0.97294 0.97237 1.20700 0.91834 0.93766 0.87603 0.93839 1.44077 1.09300 1.78274 1.01674 1.20490 0.84638 0.96557 0.94641 1.19493 1.16573 1.19613 0.83927 0.92226 1.25734 1.00011 0.96747 1.01771 1.70209 1.31939 1.24570 1.31283 0.85212 0.77317 0.77475 0.80494 1.19752 1.21665 1.21314 1.21897 0.93162 0.99423 0.86634 1.21649 0.97042 1.00112 0.92186 1.21593 0.96979 1.02850 0.93216 1.21515 0.98167 0.98724 0.96819 1.21535 0.96969 0.99346 0.97692 1.21524 0.97958 1.01765 0.94139 1.21372 0.97160 0.98846 0.97006 0.88858 0.93860 0.91033 0.86527 0.89388 0.91785 0.87422 0.93806 0.92273 0.97231 0.96864 0.95353 0.94150 0.91705 0.93126 0.88260 0.91813 0.89650 0.91068 0.90510 0.91144 0.92521 0.91592 0.92608 0.95489 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.54 113.37 1.19 1.51 16 2 O -0.38 -9.49 8.57 -130.22 -1.12 -10.61 16 3 C 0.09 1.84 1.48 29.85 0.04 1.89 16 4 H 0.12 1.76 6.68 -2.39 -0.02 1.74 16 5 C 0.50 15.93 6.04 87.66 0.53 16.46 16 6 O -0.58 -25.21 15.97 15.75 0.25 -24.96 16 7 N -0.60 -17.76 2.97 -818.91 -2.43 -20.20 16 8 C 0.10 1.89 5.17 86.36 0.45 2.34 16 9 C -0.12 -2.63 6.08 30.67 0.19 -2.44 16 10 C -0.12 -4.05 5.15 30.62 0.16 -3.89 16 11 C 0.17 7.01 2.74 45.07 0.12 7.13 16 12 H 0.04 1.95 7.87 -2.38 -0.02 1.93 16 13 N -0.61 -31.45 2.81 -702.34 -1.98 -33.43 16 14 C 0.18 9.11 8.03 127.77 1.03 10.14 16 15 C -0.27 -15.25 9.59 84.03 0.81 -14.44 16 16 H 0.06 3.43 7.82 -2.91 -0.02 3.41 16 17 C -0.05 -2.72 5.15 84.86 0.44 -2.28 16 18 N -0.93 -55.72 10.60 21.65 0.23 -55.49 16 19 Si 0.97 46.60 29.57 68.60 2.03 48.63 16 20 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 C 0.11 4.35 5.77 86.36 0.50 4.84 16 24 C -0.09 -1.52 1.60 -10.79 -0.02 -1.53 16 25 C -0.11 -1.19 4.83 30.60 0.15 -1.04 16 26 C -0.11 -1.08 5.92 30.60 0.18 -0.90 16 27 C -0.12 -1.45 5.92 30.60 0.18 -1.27 16 28 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 29 C -0.11 -2.32 4.82 30.59 0.15 -2.17 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 32 H 0.07 0.73 7.32 -2.39 -0.02 0.71 16 33 H 0.12 1.38 4.75 -2.39 -0.01 1.37 16 34 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.94 7.72 -2.39 -0.02 1.93 16 39 H 0.01 0.51 7.40 -2.39 -0.02 0.49 16 40 H 0.01 0.71 7.23 -2.39 -0.02 0.69 16 41 H 0.03 1.21 6.35 -2.39 -0.02 1.20 16 42 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.06 2.43 6.49 -2.39 -0.02 2.41 16 44 H 0.05 2.32 7.03 -2.39 -0.02 2.30 16 45 H 0.10 1.40 5.95 -2.38 -0.01 1.39 16 46 H 0.06 0.80 7.11 -2.39 -0.02 0.79 16 47 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 51 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 54 H 0.03 0.76 7.39 -2.38 -0.02 0.75 16 55 H 0.06 1.40 7.55 -2.39 -0.02 1.38 16 Total: -1.00 -76.48 405.34 4.10 -72.38 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.84 Total: 11.06 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 6.27 Total: 12.61 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -4.18 Total: -109.11 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.86 Total: -35.57 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -76.48 4.10 -72.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027707226.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.468 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds