Wall clock time and date at job start Tue Mar 31 2020 22:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00042 * 2 1 4 4 C 1.53002 * 109.46875 * 150.00314 * 3 2 1 5 5 C 1.52997 * 109.46996 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47064 * 299.99848 * 5 4 3 7 7 C 1.53007 * 109.47141 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47010 * 174.99999 * 7 6 5 9 9 O 1.21282 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99697 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99974 * 180.02562 * 10 8 7 12 12 H 1.09002 * 108.45755 * 327.28448 * 11 10 8 13 13 C 1.52518 * 108.52333 * 209.71824 * 11 10 8 14 14 C 1.50131 * 105.41745 * 149.34742 * 13 11 10 15 15 C 1.54843 * 110.81591 * 97.68350 * 14 13 11 16 16 C 1.54412 * 110.06671 * 321.07492 * 15 14 13 17 17 N 1.43432 * 116.39361 * 318.65317 * 16 15 14 18 18 C 1.36937 * 120.53278 * 271.73375 * 17 16 15 19 19 H 1.07996 * 120.00387 * 32.99557 * 18 17 16 20 20 C 1.38819 * 119.99818 * 212.99619 * 18 17 16 21 21 N 1.31612 * 120.00349 * 200.40273 * 20 18 17 22 22 Si 1.86802 * 119.99603 * 20.40340 * 20 18 17 23 23 H 1.48501 * 109.47093 * 269.99733 * 22 20 18 24 24 H 1.48499 * 109.47261 * 29.99758 * 22 20 18 25 25 H 1.48501 * 109.47109 * 149.99910 * 22 20 18 26 26 C 1.46236 * 108.52506 * 84.99362 * 11 10 8 27 27 C 1.53002 * 109.47090 * 60.00209 * 6 5 4 28 28 C 1.52997 * 109.47255 * 270.00205 * 3 2 1 29 29 H 1.09005 * 109.47051 * 299.99768 * 1 2 3 30 30 H 1.09000 * 109.47717 * 59.99473 * 1 2 3 31 31 H 1.08996 * 109.47388 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46920 * 30.00274 * 3 2 1 33 33 H 1.08996 * 109.46878 * 59.99893 * 4 3 2 34 34 H 1.09003 * 109.46666 * 300.00155 * 4 3 2 35 35 H 1.09002 * 109.46783 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.46990 * 59.99843 * 5 4 3 37 37 H 1.08996 * 109.47461 * 300.00023 * 6 5 4 38 38 H 1.08993 * 109.46714 * 54.99938 * 7 6 5 39 39 H 1.08998 * 109.46684 * 294.99934 * 7 6 5 40 40 H 0.96997 * 120.00541 * 359.97438 * 10 8 7 41 41 H 1.08995 * 110.25063 * 268.32317 * 13 11 10 42 42 H 1.09007 * 110.25209 * 30.37755 * 13 11 10 43 43 H 1.08996 * 109.20904 * 218.03099 * 14 13 11 44 44 H 1.08999 * 109.20646 * 337.34171 * 14 13 11 45 45 H 1.08997 * 109.35922 * 81.33942 * 15 14 13 46 46 H 1.09000 * 109.35671 * 201.06764 * 15 14 13 47 47 H 1.09000 * 107.88550 * 196.93077 * 16 15 14 48 48 H 1.09002 * 108.09961 * 80.54244 * 16 15 14 49 49 H 0.96998 * 119.99554 * 355.14471 * 21 20 18 50 50 H 1.09007 * 109.84094 * 60.14808 * 26 11 10 51 51 H 1.08998 * 109.90387 * 299.19008 * 26 11 10 52 52 H 1.08996 * 109.46878 * 60.00099 * 27 6 5 53 53 H 1.08998 * 109.47004 * 180.02562 * 27 6 5 54 54 H 1.08996 * 109.47179 * 300.00524 * 28 3 2 55 55 H 1.09002 * 109.46743 * 60.00209 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2631 0.7212 5 6 3.9810 2.6610 0.7218 6 6 4.1883 3.1275 -0.7205 7 6 4.8110 4.5251 -0.7200 8 6 5.1283 4.9342 -2.1352 9 8 4.8804 4.1822 -3.0539 10 7 5.6876 6.1358 -2.3800 11 6 5.9956 6.5338 -3.7559 12 1 6.2653 5.6416 -4.3210 13 6 7.1991 7.4703 -3.7315 14 6 7.9131 7.2366 -5.0313 15 6 7.5204 8.3104 -6.0756 16 6 6.0155 8.6365 -5.9601 17 7 5.1356 7.5224 -5.7558 18 6 4.6207 6.8375 -6.8241 19 1 5.2028 6.7288 -7.7272 20 6 3.3505 6.2830 -6.7460 21 7 3.0047 5.3124 -7.5649 22 14 2.1320 6.9145 -5.4787 23 1 2.2779 6.1376 -4.2217 24 1 2.3993 8.3499 -5.2073 25 1 0.7502 6.7582 -5.9997 26 6 4.7932 7.1151 -4.3516 27 6 2.8396 3.1698 -1.4417 28 6 2.2177 1.7714 -1.4425 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.3450 1.9993 0.5139 33 1 4.0241 0.5692 0.2073 34 1 3.2111 0.9311 1.7489 35 1 4.9417 2.6309 1.2360 36 1 3.3156 3.3545 1.2359 37 1 4.8537 2.4340 -1.2347 38 1 5.7278 4.5141 -0.1307 39 1 4.1081 5.2358 -0.2852 40 1 5.8855 6.7374 -1.6453 41 1 6.8692 8.5069 -3.6633 42 1 7.8514 7.2247 -2.8934 43 1 8.9890 7.2777 -4.8619 44 1 7.6483 6.2509 -5.4137 45 1 8.1022 9.2152 -5.8998 46 1 7.7306 7.9345 -7.0769 47 1 5.7122 9.1458 -6.8748 48 1 5.8823 9.3312 -5.1308 49 1 3.6109 5.0324 -8.2684 50 1 4.4816 7.9885 -3.7786 51 1 3.9917 6.3765 -4.3655 52 1 2.1743 3.8634 -0.9276 53 1 2.9874 3.5017 -2.4693 54 1 2.8828 1.0775 -1.9563 55 1 1.2568 1.8015 -1.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034553512.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:04 Heat of formation + Delta-G solvation = -104.294695 kcal Electronic energy + Delta-G solvation = -31605.546291 eV Core-core repulsion = 27641.206048 eV Total energy + Delta-G solvation = -3964.340243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.40045 -40.27919 -39.32154 -37.51820 -36.04383 -35.06486 -33.25351 -33.11130 -31.73797 -31.56487 -28.41867 -27.86536 -26.77764 -26.21776 -24.39109 -23.68073 -22.69410 -22.05038 -21.32646 -20.78245 -20.46283 -19.31538 -18.00371 -17.62379 -17.49802 -16.97267 -16.72067 -16.37470 -16.13227 -15.94738 -15.55462 -15.44185 -15.32002 -14.96812 -14.75990 -14.57782 -14.41836 -14.16668 -13.92095 -13.77602 -13.54977 -13.31125 -13.26298 -12.96978 -12.82703 -12.64163 -12.49862 -12.39247 -12.07059 -11.97011 -11.86404 -11.77567 -11.58916 -11.54271 -11.53738 -11.46933 -11.37231 -11.19951 -11.06032 -10.69614 -10.62498 -10.30896 -10.02325 -9.10862 -8.49154 -5.61842 1.31953 1.45036 1.63673 1.80447 2.26807 2.49794 2.81077 3.05201 3.43773 3.68570 3.71936 3.75819 3.81404 4.00424 4.04899 4.11886 4.14164 4.26201 4.34468 4.37884 4.41541 4.44243 4.47193 4.48167 4.51656 4.53135 4.57337 4.59726 4.69970 4.79402 4.81607 4.84165 4.87596 4.93796 4.96464 5.03790 5.09746 5.13404 5.15654 5.21865 5.22203 5.27026 5.30752 5.31125 5.39576 5.49230 5.52034 5.56281 5.65795 5.80498 6.26560 6.28378 6.74334 6.86293 7.49986 7.62999 8.05445 8.80694 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.003341 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.802284 B = 8378.892283 C = 9849.684440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.092 3.908 4 C -0.113 4.113 5 C -0.098 4.098 6 C -0.072 4.072 7 C -0.124 4.124 8 C 0.490 3.510 9 O -0.587 6.587 10 N -0.720 5.720 11 C 0.140 3.860 12 H 0.035 0.965 13 C -0.103 4.103 14 C -0.107 4.107 15 C -0.137 4.137 16 C 0.145 3.855 17 N -0.607 5.607 18 C -0.330 4.330 19 H 0.021 0.979 20 C -0.064 4.064 21 N -0.955 5.955 22 Si 1.109 2.891 23 H -0.286 1.286 24 H -0.252 1.252 25 H -0.308 1.308 26 C 0.108 3.892 27 C -0.118 4.118 28 C -0.137 4.137 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.418 0.582 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.019 0.981 45 H 0.094 0.906 46 H 0.027 0.973 47 H 0.026 0.974 48 H 0.064 0.936 49 H 0.246 0.754 50 H 0.066 0.934 51 H 0.044 0.956 52 H 0.072 0.928 53 H 0.039 0.961 54 H 0.044 0.956 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 1.838 25.725 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.034 3.966 4 C -0.151 4.151 5 C -0.136 4.136 6 C -0.091 4.091 7 C -0.163 4.163 8 C 0.279 3.721 9 O -0.466 6.466 10 N -0.374 5.374 11 C 0.034 3.966 12 H 0.053 0.947 13 C -0.141 4.141 14 C -0.145 4.145 15 C -0.178 4.178 16 C 0.018 3.982 17 N -0.331 5.331 18 C -0.460 4.460 19 H 0.039 0.961 20 C -0.259 4.259 21 N -0.597 5.597 22 Si 0.935 3.065 23 H -0.214 1.214 24 H -0.176 1.176 25 H -0.237 1.237 26 C -0.016 4.016 27 C -0.156 4.156 28 C -0.175 4.175 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.256 0.744 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.038 0.962 45 H 0.113 0.887 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.082 0.918 49 H 0.055 0.945 50 H 0.084 0.916 51 H 0.062 0.938 52 H 0.091 0.909 53 H 0.058 0.942 54 H 0.063 0.937 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.633 0.948 25.656 25.808 hybrid contribution 1.246 -0.221 -2.184 2.524 sum 3.879 0.727 23.472 23.801 Atomic orbital electron populations 1.22943 0.80068 1.03639 1.00525 1.87867 1.21033 1.28920 1.95120 1.22253 0.95999 0.84047 0.94259 1.21584 0.94272 0.98325 1.00877 1.21524 1.02560 0.95307 0.94176 1.20915 0.95534 0.95573 0.97043 1.21804 1.04898 0.98395 0.91239 1.21752 0.76163 0.81212 0.93021 1.90776 1.53340 1.53730 1.48772 1.46289 1.63503 1.18474 1.09123 1.20448 0.96271 0.97636 0.82241 0.94683 1.21277 0.94707 0.99870 0.98240 1.21290 1.00091 0.97793 0.95304 1.22732 0.98018 0.99415 0.97586 1.20521 0.89733 0.88402 0.99571 1.44184 1.53952 1.34546 1.00401 1.19902 0.97861 1.32984 0.95251 0.96107 1.27410 0.98570 0.95729 1.04237 1.71016 1.41767 1.26232 1.20720 0.83219 0.73090 0.77070 0.73089 1.21426 1.17596 1.23669 1.21203 0.96967 0.98118 0.85283 1.21627 0.97066 0.96115 1.00784 1.21974 1.00174 0.97210 0.98148 0.92381 0.94592 0.88580 0.90577 0.92680 0.89569 0.88823 0.89521 0.93092 0.85141 0.86117 0.74407 0.88919 0.88262 0.90397 0.96190 0.88723 0.95409 0.95563 0.91784 0.94527 0.91599 0.93822 0.90888 0.94204 0.93666 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.82 113.37 1.23 1.66 16 2 O -0.41 -9.91 10.35 -148.98 -1.54 -11.46 16 3 C 0.09 2.01 2.61 30.59 0.08 2.09 16 4 C -0.11 -2.03 5.57 30.59 0.17 -1.86 16 5 C -0.10 -1.41 5.20 30.59 0.16 -1.25 16 6 C -0.07 -1.63 1.84 -10.79 -0.02 -1.65 16 7 C -0.12 -2.32 5.18 29.85 0.15 -2.16 16 8 C 0.49 15.40 7.46 87.66 0.65 16.05 16 9 O -0.59 -26.80 13.50 -3.03 -0.04 -26.84 16 10 N -0.72 -19.32 4.87 -453.32 -2.21 -21.53 16 11 C 0.14 4.99 2.01 42.75 0.09 5.07 16 12 H 0.03 1.66 6.22 -2.39 -0.01 1.64 16 13 C -0.10 -2.66 5.25 29.51 0.15 -2.51 16 14 C -0.11 -3.28 5.65 30.30 0.17 -3.11 16 15 C -0.14 -4.42 6.40 31.70 0.20 -4.22 16 16 C 0.14 5.57 5.13 87.43 0.45 6.02 16 17 N -0.61 -29.42 2.25 -708.84 -1.60 -31.02 16 18 C -0.33 -20.02 9.85 84.04 0.83 -19.20 16 19 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 20 C -0.06 -4.08 5.28 84.86 0.45 -3.63 16 21 N -0.96 -65.78 13.70 21.65 0.30 -65.48 16 22 Si 1.11 57.56 25.25 68.60 1.73 59.29 16 23 H -0.29 -14.51 6.41 99.48 0.64 -13.87 16 24 H -0.25 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.31 -16.19 7.11 99.48 0.71 -15.48 16 26 C 0.11 4.63 3.50 83.58 0.29 4.93 16 27 C -0.12 -3.44 4.95 30.61 0.15 -3.29 16 28 C -0.14 -3.92 5.54 30.61 0.17 -3.75 16 29 H 0.06 0.81 8.09 -2.38 -0.02 0.79 16 30 H 0.04 0.68 7.87 -2.39 -0.02 0.66 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.39 7.79 -2.38 -0.02 1.37 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.05 1.46 7.95 -2.39 -0.02 1.44 16 38 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.42 6.73 8.61 -92.71 -0.80 5.93 16 41 H 0.09 2.07 6.28 -2.39 -0.02 2.06 16 42 H 0.10 1.88 8.04 -2.38 -0.02 1.86 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.02 0.79 6.82 -2.39 -0.02 0.77 16 45 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 48 H 0.06 2.02 6.89 -2.39 -0.02 2.00 16 49 H 0.25 17.09 8.73 -92.71 -0.81 16.28 16 50 H 0.07 2.39 8.12 -2.38 -0.02 2.37 16 51 H 0.04 2.24 3.76 -2.39 -0.01 2.23 16 52 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 53 H 0.04 1.60 5.95 -2.39 -0.01 1.58 16 54 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 55 H 0.05 1.48 7.87 -2.39 -0.02 1.46 16 Total: -1.00 -88.07 405.54 1.97 -86.10 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.05 Total: 21.73 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.38 Total: -10.80 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -3.51 Total: -118.03 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.58 Total: -38.29 kcal Atomic # 14 Polarization: 57.56 SS G_CDS: 1.73 Total: 59.29 kcal Total: -88.07 1.97 -86.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034553512.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.192 kcal (2) G-P(sol) polarization free energy of solvation -88.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds