Wall clock time and date at job start Tue Mar 31 2020 22:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00184 * 2 1 4 4 H 1.09003 * 109.47483 * 330.00088 * 3 2 1 5 5 C 1.53001 * 109.47111 * 89.99674 * 3 2 1 6 6 C 1.52998 * 109.47415 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47232 * 300.00736 * 6 5 3 8 8 C 1.52997 * 109.47112 * 59.99640 * 7 6 5 9 9 H 1.09003 * 109.47068 * 60.00329 * 8 7 6 10 10 C 1.52995 * 109.46670 * 179.97438 * 8 7 6 11 11 C 1.50697 * 109.47424 * 294.99961 * 10 8 7 12 12 O 1.21280 * 120.00125 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00276 * 180.02562 * 11 10 8 14 14 C 1.46505 * 119.99947 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47329 * 34.99844 * 14 13 11 16 16 C 1.53007 * 109.46791 * 155.00000 * 14 13 11 17 17 C 1.53004 * 109.46632 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47317 * 300.00015 * 17 16 14 19 19 H 1.09007 * 109.47095 * 300.00190 * 18 17 16 20 20 N 1.46497 * 109.47207 * 180.02562 * 18 17 16 21 21 C 1.36935 * 120.00298 * 154.99864 * 20 18 17 22 22 H 1.08003 * 119.99995 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00267 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00268 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00127 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46845 * 60.00531 * 25 23 21 27 27 H 1.48503 * 109.47399 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47295 * 300.00628 * 25 23 21 29 29 C 1.52995 * 109.47247 * 60.00070 * 18 17 16 30 30 C 1.52997 * 109.46852 * 274.99747 * 14 13 11 31 31 C 1.52995 * 109.47355 * 209.99758 * 3 2 1 32 32 H 1.09000 * 109.47218 * 299.99926 * 1 2 3 33 33 H 1.09004 * 109.46825 * 60.00065 * 1 2 3 34 34 H 1.09004 * 109.47235 * 179.97438 * 1 2 3 35 35 H 1.09008 * 109.46635 * 60.00330 * 5 3 2 36 36 H 1.08995 * 109.47477 * 300.00825 * 5 3 2 37 37 H 1.08998 * 109.46991 * 180.02562 * 6 5 3 38 38 H 1.09004 * 109.46343 * 60.00335 * 6 5 3 39 39 H 1.08998 * 109.46773 * 299.99366 * 7 6 5 40 40 H 1.08999 * 109.46996 * 179.97438 * 7 6 5 41 41 H 1.08997 * 109.47307 * 174.99949 * 10 8 7 42 42 H 1.09000 * 109.47832 * 55.00201 * 10 8 7 43 43 H 0.96997 * 120.00035 * 359.97438 * 13 11 10 44 44 H 1.08998 * 109.47264 * 60.00315 * 16 14 13 45 45 H 1.08992 * 109.47132 * 299.99943 * 16 14 13 46 46 H 1.09004 * 109.46689 * 180.02562 * 17 16 14 47 47 H 1.08998 * 109.46938 * 60.00238 * 17 16 14 48 48 H 0.96992 * 120.00013 * 334.99763 * 20 18 17 49 49 H 0.97000 * 119.99327 * 359.97438 * 24 23 21 50 50 H 1.08998 * 109.47027 * 59.99765 * 29 18 17 51 51 H 1.09005 * 109.47352 * 180.02562 * 29 18 17 52 52 H 1.08998 * 109.47650 * 299.99958 * 30 14 13 53 53 H 1.08994 * 109.47602 * 60.00611 * 30 14 13 54 54 H 1.09005 * 109.47218 * 59.99967 * 31 3 2 55 55 H 1.08996 * 109.47464 * 300.00658 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 2.8406 3.1688 1.4426 7 6 4.1893 3.1260 0.7215 8 6 3.9819 2.6601 -0.7210 9 1 3.3170 3.3543 -1.2349 10 6 5.3305 2.6180 -1.4422 11 6 5.8863 4.0146 -1.5503 12 8 5.2650 4.9514 -1.0949 13 7 7.0736 4.2226 -2.1531 14 6 7.6136 5.5804 -2.2586 15 1 7.3448 6.1486 -1.3682 16 6 9.1373 5.5152 -2.3814 17 6 9.7011 6.9332 -2.4923 18 6 9.1186 7.6184 -3.7300 19 1 9.3874 7.0498 -4.6204 20 7 9.6589 8.9759 -3.8365 21 6 9.7185 9.5954 -5.0563 22 1 9.3675 9.0831 -5.9399 23 6 10.2300 10.8819 -5.1571 24 7 10.6582 11.5062 -4.0804 25 14 10.3119 11.7268 -6.8211 26 1 8.9435 11.8394 -7.3869 27 1 10.8944 13.0832 -6.6595 28 1 11.1633 10.9291 -7.7399 29 6 7.5950 7.6836 -3.6073 30 6 7.0311 6.2661 -3.4962 31 6 3.3589 1.2632 -0.7212 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 2.8830 1.0773 1.9563 36 1 1.2569 1.8013 1.9564 37 1 2.9887 3.5004 2.4703 38 1 2.1756 3.8629 0.9286 39 1 4.8542 2.4319 1.2354 40 1 4.6329 4.1216 0.7211 41 1 5.1958 2.2023 -2.4407 42 1 6.0243 1.9935 -0.8794 43 1 7.5707 3.4734 -2.5170 44 1 9.4061 4.9471 -3.2720 45 1 9.5522 5.0267 -1.4998 46 1 10.7866 6.8867 -2.5802 47 1 9.4324 7.5017 -1.6020 48 1 9.9745 9.4359 -3.0431 49 1 10.6160 11.0673 -3.2164 50 1 7.3262 8.2520 -2.7170 51 1 7.1799 8.1713 -4.4894 52 1 7.2999 5.6980 -4.3867 53 1 5.9457 6.3126 -3.4088 54 1 3.2112 0.9313 -1.7489 55 1 4.0242 0.5692 -0.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034659884.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:38 Heat of formation + Delta-G solvation = -135.663065 kcal Electronic energy + Delta-G solvation = -29802.087182 eV Core-core repulsion = 25836.386704 eV Total energy + Delta-G solvation = -3965.700478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.30387 -40.20458 -39.29792 -37.49886 -36.53041 -34.78490 -33.47488 -32.24754 -31.77258 -31.07059 -29.24576 -27.62444 -27.30161 -25.48475 -23.73790 -23.37274 -23.15294 -22.18814 -21.34789 -20.88457 -20.67419 -19.34372 -18.00489 -17.58484 -17.19109 -16.87090 -16.53892 -16.37617 -16.04127 -15.93565 -15.76365 -15.38251 -15.17156 -15.13238 -14.79010 -14.61424 -14.26352 -14.10914 -13.82903 -13.53414 -13.28975 -13.16543 -13.13315 -12.90343 -12.73396 -12.70846 -12.47678 -12.35024 -12.22566 -12.09987 -11.95635 -11.94440 -11.86862 -11.57869 -11.52352 -11.43479 -11.37665 -11.30129 -11.12145 -10.85847 -10.60423 -10.38931 -9.96681 -9.11362 -8.38835 -5.32091 1.57115 1.67378 1.74030 1.83610 2.20649 2.71382 2.80806 3.39800 3.63782 3.66233 3.70828 3.74111 3.81328 3.89023 4.09085 4.10101 4.20451 4.22452 4.29274 4.30476 4.31202 4.44565 4.48516 4.50110 4.51746 4.51792 4.54770 4.59409 4.65463 4.70310 4.75433 4.79409 4.84943 4.86681 4.90305 5.03280 5.05874 5.06295 5.08949 5.16401 5.19484 5.22599 5.24465 5.32424 5.42447 5.45059 5.52096 5.53590 5.60440 5.62740 6.27738 6.49906 6.67279 7.10974 7.38846 8.01462 8.13085 9.13250 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.001699 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.296963 B =16479.691473 C =16649.851992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.086 3.914 4 H 0.058 0.942 5 C -0.134 4.134 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.063 4.063 9 H 0.059 0.941 10 C -0.128 4.128 11 C 0.506 3.494 12 O -0.580 6.580 13 N -0.714 5.714 14 C 0.154 3.846 15 H 0.061 0.939 16 C -0.105 4.105 17 C -0.114 4.114 18 C 0.177 3.823 19 H 0.045 0.955 20 N -0.752 5.752 21 C -0.328 4.328 22 H 0.066 0.934 23 C -0.108 4.108 24 N -0.977 5.977 25 Si 1.127 2.873 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.275 1.275 29 C -0.122 4.122 30 C -0.110 4.110 31 C -0.103 4.103 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.417 0.583 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.358 0.642 49 H 0.243 0.757 50 H 0.036 0.964 51 H 0.036 0.964 52 H 0.074 0.926 53 H 0.047 0.953 54 H 0.076 0.924 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.958 -29.364 8.805 34.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.029 3.971 4 H 0.076 0.924 5 C -0.172 4.172 6 C -0.151 4.151 7 C -0.158 4.158 8 C -0.083 4.083 9 H 0.078 0.922 10 C -0.168 4.168 11 C 0.295 3.705 12 O -0.460 6.460 13 N -0.366 5.366 14 C 0.049 3.951 15 H 0.079 0.921 16 C -0.143 4.143 17 C -0.153 4.153 18 C 0.069 3.931 19 H 0.063 0.937 20 N -0.393 5.393 21 C -0.459 4.459 22 H 0.084 0.916 23 C -0.299 4.299 24 N -0.626 5.626 25 Si 0.952 3.048 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.201 1.201 29 C -0.163 4.163 30 C -0.149 4.149 31 C -0.141 4.141 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.254 0.746 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.189 0.811 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.055 0.945 52 H 0.093 0.907 53 H 0.066 0.934 54 H 0.095 0.905 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.906 -27.621 8.126 32.893 hybrid contribution -0.508 -0.515 1.044 1.270 sum -16.414 -28.136 9.169 33.840 Atomic orbital electron populations 1.22938 0.80066 1.03665 1.00479 1.87861 1.20912 1.28459 1.95208 1.22177 0.95229 0.83969 0.95729 0.92407 1.21983 1.01309 0.96911 0.96976 1.21432 0.96726 0.96281 1.00701 1.21696 0.97346 1.01779 0.94951 1.20755 0.95380 0.96106 0.96018 0.92240 1.21754 0.97925 0.92428 1.04684 1.21346 0.80568 0.92370 0.76266 1.90688 1.59865 1.46327 1.49112 1.45998 1.21643 1.09445 1.59534 1.20739 0.93682 0.83303 0.97379 0.92070 1.21638 0.92496 0.96077 1.04085 1.21656 1.00290 0.96206 0.97165 1.20431 0.91157 0.84705 0.96786 0.93690 1.42692 1.75633 1.14813 1.06151 1.20384 1.37777 1.00043 0.87734 0.91637 1.27188 0.99307 0.95591 1.07765 1.70990 1.52334 1.40235 0.98994 0.82640 0.76753 0.74995 0.70449 1.20698 1.21949 1.20100 1.21995 0.98267 0.96243 0.99778 1.21734 0.99244 0.95221 0.98743 1.21555 0.94933 0.96361 1.01237 0.93618 0.93546 0.88485 0.91146 0.91774 0.91509 0.92814 0.91391 0.92316 0.86359 0.86226 0.74603 0.89448 0.89220 0.91595 0.92988 0.81076 0.94658 0.94532 0.94481 0.90688 0.93372 0.90509 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.40 -6.43 10.35 -148.98 -1.54 -7.97 16 3 C 0.09 1.23 2.61 30.59 0.08 1.31 16 4 H 0.06 0.84 7.79 -2.39 -0.02 0.82 16 5 C -0.13 -1.86 5.54 30.59 0.17 -1.69 16 6 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 7 C -0.12 -2.05 4.95 30.59 0.15 -1.90 16 8 C -0.06 -0.94 1.84 -10.81 -0.02 -0.96 16 9 H 0.06 1.14 7.95 -2.39 -0.02 1.12 16 10 C -0.13 -1.49 5.18 29.85 0.15 -1.34 16 11 C 0.51 10.20 7.51 87.66 0.66 10.86 16 12 O -0.58 -17.37 13.63 -3.03 -0.04 -17.41 16 13 N -0.71 -12.35 5.08 -442.53 -2.25 -14.60 16 14 C 0.15 3.73 2.46 44.99 0.11 3.84 16 15 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 16 C -0.10 -2.25 5.39 30.60 0.16 -2.09 16 17 C -0.11 -3.55 5.39 30.59 0.16 -3.38 16 18 C 0.18 7.01 2.77 44.99 0.12 7.14 16 19 H 0.05 1.80 8.08 -2.38 -0.02 1.78 16 20 N -0.75 -38.66 5.12 -322.95 -1.65 -40.31 16 21 C -0.33 -18.76 9.93 84.03 0.83 -17.93 16 22 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 23 C -0.11 -6.37 5.50 84.86 0.47 -5.91 16 24 N -0.98 -62.47 13.70 21.65 0.30 -62.17 16 25 Si 1.13 52.85 29.92 68.60 2.05 54.90 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 29 C -0.12 -4.61 5.50 30.58 0.17 -4.44 16 30 C -0.11 -3.18 5.49 30.58 0.17 -3.01 16 31 C -0.10 -1.27 4.85 30.58 0.15 -1.12 16 32 H 0.05 0.43 7.87 -2.39 -0.02 0.41 16 33 H 0.05 0.43 8.09 -2.38 -0.02 0.42 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.06 0.83 7.87 -2.39 -0.02 0.81 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.37 5.95 -2.39 -0.01 1.35 16 41 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.42 4.09 8.60 -92.71 -0.80 3.30 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.36 19.32 6.63 -92.71 -0.61 18.70 16 49 H 0.24 15.51 6.77 -92.71 -0.63 14.88 16 50 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 52 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 53 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 54 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 55 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -75.67 420.17 1.40 -74.27 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.42 Total: 34.04 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.95 Total: -20.75 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -3.60 Total: -117.08 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.58 Total: -25.38 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 2.05 Total: 54.90 kcal Total: -75.67 1.40 -74.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034659884.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.392 kcal (2) G-P(sol) polarization free energy of solvation -75.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds