Wall clock time and date at job start Tue Mar 31 2020 22:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 113.99747 * 2 1 4 4 H 1.09005 * 109.47723 * 30.00125 * 3 2 1 5 5 C 1.52999 * 109.47371 * 270.00350 * 3 2 1 6 6 C 1.53006 * 109.47030 * 299.99858 * 5 3 2 7 7 C 1.53002 * 109.47141 * 300.00238 * 6 5 3 8 8 C 1.53000 * 109.47289 * 59.99403 * 7 6 5 9 9 H 1.09001 * 109.46829 * 60.00159 * 8 7 6 10 10 C 1.53002 * 109.47289 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.47061 * 295.00228 * 10 8 7 12 12 O 1.21283 * 120.00052 * 359.97438 * 11 10 8 13 13 N 1.34770 * 119.99922 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00256 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.46845 * 325.00694 * 14 13 11 16 16 C 1.53006 * 109.47249 * 84.99846 * 14 13 11 17 17 C 1.52997 * 109.47164 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46978 * 299.99874 * 17 16 14 19 19 H 1.08992 * 109.47056 * 300.00064 * 18 17 16 20 20 N 1.46505 * 109.46958 * 180.02562 * 18 17 16 21 21 C 1.36939 * 119.99584 * 85.00133 * 20 18 17 22 22 H 1.07993 * 120.00301 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99501 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00187 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99877 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47101 * 90.00007 * 25 23 21 27 27 H 1.48504 * 109.47431 * 209.99887 * 25 23 21 28 28 H 1.48498 * 109.47164 * 330.00128 * 25 23 21 29 29 C 1.52996 * 109.46891 * 60.00410 * 18 17 16 30 30 C 1.52997 * 109.47473 * 205.00145 * 14 13 11 31 31 C 1.52995 * 109.47328 * 150.00233 * 3 2 1 32 32 H 1.09001 * 109.47317 * 60.00012 * 1 2 3 33 33 H 1.09001 * 109.47107 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47489 * 299.99766 * 1 2 3 35 35 H 1.09001 * 109.47252 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47614 * 60.00133 * 5 3 2 37 37 H 1.08990 * 109.47298 * 180.02562 * 6 5 3 38 38 H 1.09001 * 109.46902 * 60.00032 * 6 5 3 39 39 H 1.09001 * 109.47055 * 299.99700 * 7 6 5 40 40 H 1.08997 * 109.46968 * 180.02562 * 7 6 5 41 41 H 1.08991 * 109.46961 * 175.00218 * 10 8 7 42 42 H 1.09000 * 109.46564 * 55.00033 * 10 8 7 43 43 H 0.97005 * 120.00370 * 0.02562 * 13 11 10 44 44 H 1.09001 * 109.47002 * 60.00085 * 16 14 13 45 45 H 1.09000 * 109.47050 * 300.00351 * 16 14 13 46 46 H 1.09002 * 109.47045 * 180.02562 * 17 16 14 47 47 H 1.09001 * 109.47375 * 59.99966 * 17 16 14 48 48 H 0.97001 * 119.99745 * 265.00017 * 20 18 17 49 49 H 0.96998 * 120.00284 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.47368 * 179.97438 * 29 18 17 51 51 H 1.09001 * 109.47372 * 59.99964 * 29 18 17 52 52 H 1.09002 * 109.47153 * 59.99757 * 30 14 13 53 53 H 1.09001 * 109.46832 * 299.99948 * 30 14 13 54 54 H 1.09002 * 109.46903 * 299.99760 * 31 3 2 55 55 H 1.09001 * 109.47473 * 180.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 3.1514 0.7974 -2.1638 7 6 4.5001 0.7552 -1.4426 8 6 4.2927 0.2894 0.0000 9 1 3.8494 -0.7064 -0.0001 10 6 5.6415 0.2465 0.7210 11 6 6.5178 -0.8019 0.0855 12 8 6.1041 -1.4513 -0.8516 13 7 7.7611 -1.0179 0.5584 14 6 8.6133 -2.0368 -0.0597 15 1 7.9983 -2.8755 -0.3860 16 6 9.3354 -1.4340 -1.2665 17 6 10.2248 -2.4983 -1.9123 18 6 11.2558 -2.9881 -0.8935 19 1 11.8710 -2.1496 -0.5672 20 7 12.1079 -4.0067 -1.5122 21 6 13.2031 -3.6311 -2.2434 22 1 13.4389 -2.5842 -2.3637 23 6 14.0107 -4.5963 -2.8291 24 7 13.7236 -5.8724 -2.6821 25 14 15.5051 -4.0841 -3.8260 26 1 16.6880 -3.9921 -2.9330 27 1 15.7623 -5.0919 -4.8860 28 1 15.2531 -2.7611 -4.4516 29 6 10.5337 -3.5909 0.3132 30 6 9.6442 -2.5262 0.9594 31 6 3.3588 1.2633 0.7212 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.6612 2.7670 -1.4424 36 1 1.2567 1.8015 -1.9563 37 1 3.2995 1.1296 -3.1912 38 1 2.7081 -0.1983 -2.1638 39 1 4.9434 1.7510 -1.4425 40 1 5.1655 0.0618 -1.9567 41 1 5.4843 0.0009 1.7712 42 1 6.1256 1.2201 0.6440 43 1 8.0919 -0.4988 1.3082 44 1 9.9503 -0.5952 -0.9402 45 1 8.6009 -1.0854 -1.9925 46 1 10.7396 -2.0687 -2.7718 47 1 9.6096 -3.3368 -2.2386 48 1 11.8962 -4.9471 -1.4038 49 1 14.2877 -6.5468 -3.0917 50 1 11.2681 -3.9403 1.0389 51 1 9.9185 -4.4294 -0.0131 52 1 9.1297 -2.9556 1.8191 53 1 10.2591 -1.6874 1.2856 54 1 3.2110 0.9314 1.7489 55 1 3.8019 2.2592 0.7216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034659885.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:43 Heat of formation + Delta-G solvation = -133.118940 kcal Electronic energy + Delta-G solvation = -30057.269453 eV Core-core repulsion = 26091.679297 eV Total energy + Delta-G solvation = -3965.590156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.25344 -40.20969 -39.20371 -37.11437 -36.26465 -34.60216 -33.37402 -32.34741 -31.68179 -31.12812 -29.35360 -27.70647 -27.25535 -25.50000 -23.66943 -23.44765 -23.03323 -22.06061 -21.28189 -20.72670 -20.46374 -19.11339 -17.92681 -17.39236 -16.95774 -16.84585 -16.57551 -16.41202 -16.05256 -15.87264 -15.61515 -15.39295 -15.05219 -14.89343 -14.67776 -14.39776 -14.22124 -13.99456 -13.49192 -13.42696 -13.29239 -13.18900 -13.08080 -12.94448 -12.83962 -12.68562 -12.57624 -12.38225 -12.24583 -12.14946 -12.11150 -12.03446 -11.86206 -11.65553 -11.46261 -11.40880 -11.22328 -11.16697 -11.11865 -10.85080 -10.43587 -10.32082 -9.91967 -8.99518 -7.93441 -5.21697 1.46262 1.48234 1.56439 1.79645 2.29501 2.56696 2.97716 3.39260 3.71916 3.75912 3.79098 3.85517 3.90096 3.94091 4.05045 4.23301 4.30962 4.31577 4.38173 4.41664 4.42769 4.49810 4.52487 4.58127 4.59511 4.60486 4.65897 4.67172 4.73607 4.79647 4.85420 4.87396 4.89698 4.91974 5.01033 5.01333 5.09650 5.13200 5.16392 5.25635 5.28299 5.32800 5.35614 5.41195 5.48339 5.52147 5.55122 5.63012 5.66948 5.69344 6.29220 6.40816 6.73060 7.34429 7.45201 8.12247 8.34694 9.30289 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.001814 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.209925 B =15429.008591 C =15807.499904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.083 3.917 4 H 0.078 0.922 5 C -0.136 4.136 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.062 4.062 9 H 0.050 0.950 10 C -0.129 4.129 11 C 0.503 3.497 12 O -0.583 6.583 13 N -0.714 5.714 14 C 0.153 3.847 15 H 0.057 0.943 16 C -0.109 4.109 17 C -0.123 4.123 18 C 0.173 3.827 19 H 0.049 0.951 20 N -0.740 5.740 21 C -0.236 4.236 22 H 0.076 0.924 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.972 3.028 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.271 1.271 29 C -0.114 4.114 30 C -0.104 4.104 31 C -0.106 4.106 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.417 0.583 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.039 0.961 47 H 0.035 0.965 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.067 0.933 51 H 0.049 0.951 52 H 0.087 0.913 53 H 0.089 0.911 54 H 0.077 0.923 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.074 21.357 13.285 36.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.026 3.974 4 H 0.096 0.904 5 C -0.174 4.174 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.081 4.081 9 H 0.068 0.932 10 C -0.169 4.169 11 C 0.292 3.708 12 O -0.462 6.462 13 N -0.366 5.366 14 C 0.047 3.953 15 H 0.075 0.925 16 C -0.149 4.149 17 C -0.164 4.164 18 C 0.065 3.935 19 H 0.067 0.933 20 N -0.379 5.379 21 C -0.368 4.368 22 H 0.093 0.907 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.801 3.199 26 H -0.212 1.212 27 H -0.225 1.225 28 H -0.196 1.196 29 C -0.153 4.153 30 C -0.142 4.142 31 C -0.143 4.143 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.254 0.746 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.105 0.895 53 H 0.107 0.893 54 H 0.095 0.905 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.124 20.856 12.558 35.709 hybrid contribution 0.805 -0.583 -1.004 1.413 sum -25.318 20.273 11.554 34.431 Atomic orbital electron populations 1.22885 0.80542 1.03085 1.00557 1.87959 1.20454 1.28973 1.95122 1.22280 0.95277 0.84360 0.95506 0.90364 1.22024 0.99660 0.99579 0.96144 1.21345 0.95745 0.99275 0.98588 1.21640 0.97023 1.00886 0.95880 1.20709 0.93637 0.99420 0.94383 0.93182 1.21814 0.94789 0.98582 1.01695 1.21445 0.82141 0.84264 0.82971 1.90696 1.74335 1.50804 1.30396 1.46006 1.14323 1.39760 1.36544 1.20756 0.91029 0.90401 0.93066 0.92459 1.21737 0.97754 0.98237 0.97144 1.22031 0.97447 0.97671 0.99256 1.20486 0.90198 0.91361 0.91474 0.93309 1.42685 1.29063 1.04855 1.61279 1.19636 1.01771 0.92539 1.22894 0.90654 1.25568 1.02822 0.95369 1.03427 1.69825 1.41559 0.99898 1.50968 0.85157 0.79698 0.77047 0.77990 1.21179 1.22451 1.19570 1.21654 0.98373 0.98292 0.96976 1.21646 0.96201 0.99134 0.97264 1.21717 0.93041 1.00567 0.99009 0.93759 0.89772 0.92807 0.89486 0.91967 0.92645 0.93948 0.91248 0.93408 0.86415 0.86207 0.74615 0.90510 0.93660 0.94220 0.94628 0.79788 0.94157 0.91446 0.93193 0.89480 0.89272 0.90460 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -7.23 9.00 -148.98 -1.34 -8.57 16 3 C 0.08 1.05 2.91 30.59 0.09 1.14 16 4 H 0.08 0.67 7.79 -2.38 -0.02 0.65 16 5 C -0.14 -1.80 5.63 30.60 0.17 -1.62 16 6 C -0.11 -2.15 5.78 30.60 0.18 -1.97 16 7 C -0.12 -2.32 4.94 30.60 0.15 -2.17 16 8 C -0.06 -1.07 1.69 -10.79 -0.02 -1.09 16 9 H 0.05 1.24 7.49 -2.39 -0.02 1.23 16 10 C -0.13 -1.69 5.18 29.85 0.15 -1.53 16 11 C 0.50 11.21 7.51 87.66 0.66 11.87 16 12 O -0.58 -19.24 13.63 -3.04 -0.04 -19.29 16 13 N -0.71 -13.35 5.08 -442.53 -2.25 -15.60 16 14 C 0.15 3.89 2.45 44.99 0.11 4.00 16 15 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 16 C -0.11 -3.23 5.49 30.60 0.17 -3.07 16 17 C -0.12 -4.69 5.50 30.59 0.17 -4.52 16 18 C 0.17 6.84 2.77 44.99 0.12 6.97 16 19 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 20 N -0.74 -38.25 5.12 -322.95 -1.65 -39.90 16 21 C -0.24 -13.39 9.93 84.03 0.83 -12.55 16 22 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 23 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 24 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 25 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 28 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 29 C -0.11 -3.63 5.39 30.61 0.17 -3.46 16 30 C -0.10 -2.33 5.39 30.61 0.17 -2.16 16 31 C -0.11 -1.16 4.95 30.59 0.15 -1.01 16 32 H 0.04 0.46 7.87 -2.39 -0.02 0.44 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.45 8.08 -2.39 -0.02 0.44 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.78 7.87 -2.39 -0.02 0.76 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.04 1.02 7.68 -2.39 -0.02 1.00 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 1.31 5.95 -2.39 -0.01 1.30 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.42 4.49 8.60 -92.70 -0.80 3.69 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.37 20.72 7.80 -92.71 -0.72 19.99 16 49 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 50 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 53 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 54 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 55 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -76.19 419.81 1.32 -74.87 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.67 Total: 33.88 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.96 Total: -13.87 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -3.62 Total: -116.13 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.38 Total: -27.86 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -76.19 1.32 -74.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034659885.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.252 kcal (2) G-P(sol) polarization free energy of solvation -76.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds