Wall clock time and date at job start Tue Mar 31 2020 22:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 H 1.09000 * 109.47411 * 330.00491 * 3 2 1 5 5 C 1.53006 * 109.47000 * 90.00505 * 3 2 1 6 6 C 1.52997 * 109.47127 * 59.99605 * 5 3 2 7 7 C 1.53002 * 109.46817 * 60.00361 * 6 5 3 8 8 C 1.52996 * 109.46972 * 299.99733 * 7 6 5 9 9 H 1.09000 * 109.47380 * 299.99696 * 8 7 6 10 10 C 1.53002 * 109.46969 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47380 * 65.00116 * 10 8 7 12 12 O 1.21281 * 120.00075 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99911 * 180.02562 * 11 10 8 14 14 C 1.46503 * 119.99721 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47232 * 324.99463 * 14 13 11 16 16 C 1.53003 * 109.47263 * 84.99828 * 14 13 11 17 17 C 1.52996 * 109.47027 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47654 * 300.00045 * 17 16 14 19 19 H 1.09004 * 109.46684 * 300.00615 * 18 17 16 20 20 N 1.46495 * 109.47512 * 179.97438 * 18 17 16 21 21 C 1.36945 * 120.00009 * 85.00014 * 20 18 17 22 22 H 1.07999 * 119.99555 * 0.02562 * 21 20 18 23 23 C 1.38806 * 119.99974 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00164 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99968 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47551 * 89.99373 * 25 23 21 27 27 H 1.48495 * 109.47024 * 209.99898 * 25 23 21 28 28 H 1.48510 * 109.46868 * 329.99625 * 25 23 21 29 29 C 1.53003 * 109.46941 * 59.99902 * 18 17 16 30 30 C 1.52999 * 109.46979 * 204.99924 * 14 13 11 31 31 C 1.52997 * 109.47131 * 60.00459 * 8 7 6 32 32 H 1.08996 * 109.47253 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46798 * 300.00022 * 1 2 3 34 34 H 1.09007 * 109.47360 * 59.99552 * 1 2 3 35 35 H 1.09001 * 109.46801 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.46998 * 299.99473 * 5 3 2 37 37 H 1.09002 * 109.47153 * 180.02562 * 6 5 3 38 38 H 1.08996 * 109.46952 * 300.00302 * 6 5 3 39 39 H 1.08996 * 109.47407 * 60.00219 * 7 6 5 40 40 H 1.09000 * 109.46986 * 179.97438 * 7 6 5 41 41 H 1.08996 * 109.47536 * 184.99963 * 10 8 7 42 42 H 1.09001 * 109.47114 * 304.99641 * 10 8 7 43 43 H 0.96993 * 120.00520 * 359.97438 * 13 11 10 44 44 H 1.08997 * 109.47012 * 300.00369 * 16 14 13 45 45 H 1.08998 * 109.46454 * 60.00013 * 16 14 13 46 46 H 1.09001 * 109.47084 * 179.97438 * 17 16 14 47 47 H 1.09007 * 109.47270 * 60.00527 * 17 16 14 48 48 H 0.96995 * 120.00496 * 265.00355 * 20 18 17 49 49 H 0.96999 * 119.99841 * 180.02562 * 24 23 21 50 50 H 1.08997 * 109.47012 * 179.97438 * 29 18 17 51 51 H 1.09004 * 109.47110 * 60.00077 * 29 18 17 52 52 H 1.08995 * 109.47440 * 299.99896 * 30 14 13 53 53 H 1.09000 * 109.47255 * 60.00520 * 30 14 13 54 54 H 1.09002 * 109.47153 * 179.97438 * 31 8 7 55 55 H 1.08993 * 109.47194 * 60.00154 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2178 1.7713 1.4426 6 6 3.1515 0.7972 2.1637 7 6 4.5002 0.7550 1.4424 8 6 4.2927 0.2892 -0.0001 9 1 3.8494 -0.7066 -0.0002 10 6 5.6414 0.2465 -0.7212 11 6 6.5178 -0.8021 -0.0859 12 8 6.1045 -1.4509 0.8517 13 7 7.7611 -1.0180 -0.5590 14 6 8.6133 -2.0369 0.0590 15 1 8.4228 -2.0680 1.1318 16 6 8.3010 -3.4034 -0.5543 17 6 9.1914 -4.4674 0.0907 18 6 10.6610 -4.1211 -0.1568 19 1 10.8511 -4.0899 -1.2297 20 7 11.5135 -5.1396 0.4613 21 6 11.8066 -6.2917 -0.2185 22 1 11.4096 -6.4492 -1.2104 23 6 12.6140 -7.2569 0.3674 24 7 13.0982 -7.0646 1.5761 25 14 13.0144 -8.8282 -0.5601 26 1 14.2526 -8.6314 -1.3560 27 1 13.2187 -9.9358 0.4076 28 1 11.8900 -9.1664 -1.4694 29 6 10.9733 -2.7546 0.4564 30 6 10.0830 -1.6909 -0.1881 31 6 3.3589 1.2633 -0.7212 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 2.6615 2.7668 1.4425 36 1 1.2570 1.8014 1.9564 37 1 3.2990 1.1288 3.1915 38 1 2.7081 -0.1985 2.1636 39 1 4.9436 1.7507 1.4425 40 1 5.1656 0.0614 1.9564 41 1 5.4843 0.0009 -1.7715 42 1 6.1255 1.2200 -0.6443 43 1 8.0918 -0.4988 -1.3086 44 1 7.2539 -3.6499 -0.3783 45 1 8.4916 -3.3722 -1.6270 46 1 8.9686 -5.4409 -0.3458 47 1 9.0012 -4.4986 1.1636 48 1 11.8703 -4.9979 1.3520 49 1 13.6627 -7.7390 1.9853 50 1 12.0203 -2.5082 0.2805 51 1 10.7831 -2.7858 1.5293 52 1 10.2736 -1.6597 -1.2608 53 1 10.3055 -0.7174 0.2489 54 1 3.2114 0.9317 -1.7491 55 1 3.8023 2.2590 -0.7212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034659886.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:47 Heat of formation + Delta-G solvation = -133.147156 kcal Electronic energy + Delta-G solvation = -30034.307135 eV Core-core repulsion = 26068.715755 eV Total energy + Delta-G solvation = -3965.591380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.25352 -40.21124 -39.20724 -37.11606 -36.26601 -34.60419 -33.37240 -32.34907 -31.68857 -31.12564 -29.35241 -27.70799 -27.26064 -25.50240 -23.66265 -23.44795 -23.03187 -22.06584 -21.28014 -20.72179 -20.47234 -19.11540 -17.92793 -17.39333 -16.95403 -16.82248 -16.57406 -16.40020 -16.13479 -15.89124 -15.57380 -15.37398 -15.07346 -14.85643 -14.69744 -14.37174 -14.27028 -13.99530 -13.46005 -13.41277 -13.32563 -13.18530 -13.08507 -12.94364 -12.84608 -12.68688 -12.55638 -12.38569 -12.25944 -12.15403 -12.11128 -12.03385 -11.85937 -11.65853 -11.46073 -11.40388 -11.19791 -11.17863 -11.13086 -10.84287 -10.45755 -10.32169 -9.90948 -8.99664 -7.93655 -5.21862 1.46052 1.48011 1.56211 1.79552 2.29487 2.56480 2.97633 3.39013 3.72170 3.75937 3.79317 3.84276 3.91639 3.93483 4.05136 4.23460 4.30946 4.31845 4.37885 4.41574 4.42519 4.49729 4.52296 4.58145 4.59258 4.60364 4.64736 4.68937 4.73698 4.79046 4.85083 4.87322 4.89711 4.92465 5.01135 5.01332 5.09829 5.13202 5.16092 5.25550 5.28302 5.32990 5.36182 5.41378 5.48313 5.52347 5.55083 5.62865 5.67304 5.69466 6.29132 6.40785 6.73032 7.34340 7.45155 8.12155 8.34555 9.30044 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.001820 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.920948 B =15382.299866 C =15805.377672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.082 3.918 4 H 0.078 0.922 5 C -0.136 4.136 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.063 4.063 9 H 0.047 0.953 10 C -0.129 4.129 11 C 0.503 3.497 12 O -0.583 6.583 13 N -0.714 5.714 14 C 0.153 3.847 15 H 0.058 0.942 16 C -0.111 4.111 17 C -0.123 4.123 18 C 0.173 3.827 19 H 0.048 0.952 20 N -0.740 5.740 21 C -0.236 4.236 22 H 0.075 0.925 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.972 3.028 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.271 1.271 29 C -0.114 4.114 30 C -0.104 4.104 31 C -0.106 4.106 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.417 0.583 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.035 0.965 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.067 0.933 51 H 0.050 0.950 52 H 0.088 0.912 53 H 0.088 0.912 54 H 0.075 0.925 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.094 26.978 -8.058 36.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.025 3.975 4 H 0.096 0.904 5 C -0.174 4.174 6 C -0.150 4.150 7 C -0.153 4.153 8 C -0.082 4.082 9 H 0.066 0.934 10 C -0.169 4.169 11 C 0.292 3.708 12 O -0.462 6.462 13 N -0.366 5.366 14 C 0.048 3.952 15 H 0.077 0.923 16 C -0.150 4.150 17 C -0.164 4.164 18 C 0.065 3.935 19 H 0.067 0.933 20 N -0.379 5.379 21 C -0.368 4.368 22 H 0.093 0.907 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.801 3.199 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.196 1.196 29 C -0.153 4.153 30 C -0.142 4.142 31 C -0.143 4.143 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.254 0.746 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.202 0.798 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.069 0.931 52 H 0.107 0.893 53 H 0.107 0.893 54 H 0.093 0.907 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.269 26.238 -7.552 35.874 hybrid contribution 0.392 -1.344 0.292 1.430 sum -22.877 24.894 -7.259 34.580 Atomic orbital electron populations 1.22883 0.80554 1.03046 1.00574 1.87964 1.20450 1.29052 1.95131 1.22294 0.95259 0.84319 0.95619 0.90396 1.22023 0.99688 0.99636 0.96028 1.21346 0.95764 0.99200 0.98657 1.21633 0.97021 1.00984 0.95680 1.20713 0.93624 0.99330 0.94565 0.93424 1.21813 0.94809 0.98694 1.01557 1.21445 0.82222 0.84211 0.82937 1.90696 1.73900 1.51104 1.30529 1.46006 1.14557 1.39331 1.36740 1.20754 0.90410 0.86975 0.97067 0.92328 1.21746 0.98165 0.94511 1.00580 1.22029 0.97342 0.97766 0.99243 1.20487 0.88656 0.88246 0.96135 0.93350 1.42680 1.58227 1.18471 1.18481 1.19631 1.23111 0.95400 0.98683 0.90707 1.25565 1.01567 1.02267 0.97798 1.69822 1.39806 1.36379 1.16207 0.85160 0.78154 0.79286 0.77315 1.21165 1.22433 1.19607 1.21638 0.99935 0.93986 0.99707 1.21628 0.91291 0.98684 1.02610 1.21718 0.93078 1.00619 0.98931 0.89864 0.93676 0.92829 0.89347 0.91994 0.92466 0.94110 0.91008 0.93319 0.86700 0.85935 0.74617 0.93806 0.90590 0.94305 0.94580 0.79758 0.94148 0.91404 0.93138 0.89348 0.89341 0.90664 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 113.37 1.23 1.54 16 2 O -0.41 -7.43 9.00 -148.98 -1.34 -8.77 16 3 C 0.08 1.05 2.92 30.60 0.09 1.14 16 4 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 5 C -0.14 -1.75 5.63 30.60 0.17 -1.57 16 6 C -0.11 -2.09 5.78 30.59 0.18 -1.91 16 7 C -0.12 -2.22 4.94 30.59 0.15 -2.07 16 8 C -0.06 -1.09 1.69 -10.79 -0.02 -1.10 16 9 H 0.05 1.21 7.49 -2.39 -0.02 1.19 16 10 C -0.13 -1.69 5.18 29.85 0.15 -1.54 16 11 C 0.50 11.22 7.51 87.66 0.66 11.88 16 12 O -0.58 -19.25 13.63 -3.03 -0.04 -19.29 16 13 N -0.71 -13.35 5.08 -442.52 -2.25 -15.60 16 14 C 0.15 3.90 2.45 44.99 0.11 4.01 16 15 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 16 C -0.11 -3.32 5.50 30.59 0.17 -3.15 16 17 C -0.12 -4.72 5.50 30.59 0.17 -4.55 16 18 C 0.17 6.86 2.77 44.99 0.12 6.98 16 19 H 0.05 1.90 8.08 -2.38 -0.02 1.88 16 20 N -0.74 -38.27 5.12 -322.94 -1.65 -39.93 16 21 C -0.24 -13.41 9.93 84.03 0.83 -12.57 16 22 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 24 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 25 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 26 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 29 C -0.11 -3.60 5.39 30.58 0.16 -3.44 16 30 C -0.10 -2.30 5.39 30.58 0.16 -2.14 16 31 C -0.11 -1.17 4.95 30.59 0.15 -1.02 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 0.48 7.87 -2.39 -0.02 0.46 16 34 H 0.05 0.48 8.09 -2.38 -0.02 0.46 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.76 7.87 -2.39 -0.02 0.74 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.04 0.98 7.68 -2.39 -0.02 0.96 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.29 5.95 -2.39 -0.01 1.28 16 41 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 42 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.42 4.49 8.60 -92.71 -0.80 3.69 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.37 20.71 7.80 -92.71 -0.72 19.99 16 49 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 52 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 53 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 54 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 55 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -76.41 419.80 1.32 -75.09 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.67 Total: 33.63 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 4.96 Total: -13.75 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -3.62 Total: -116.15 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -1.38 Total: -28.06 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -76.41 1.32 -75.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034659886.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.059 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds