Wall clock time and date at job start Tue Mar 31 2020 22:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.53001 * 109.47018 * 270.00354 * 3 2 1 6 6 C 1.53003 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47120 * 59.99960 * 6 5 3 8 8 C 1.53006 * 109.46964 * 299.99682 * 7 6 5 9 9 H 1.08994 * 109.47330 * 300.00734 * 8 7 6 10 10 C 1.53000 * 109.46964 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.46736 * 65.00402 * 10 8 7 12 12 O 1.21272 * 120.00017 * 359.97438 * 11 10 8 13 13 N 1.34778 * 119.99542 * 180.02562 * 11 10 8 14 14 C 1.46495 * 119.99797 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47276 * 324.99092 * 14 13 11 16 16 C 1.52995 * 109.47820 * 84.99341 * 14 13 11 17 17 C 1.52995 * 109.47696 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47055 * 300.00286 * 17 16 14 19 19 H 1.08998 * 109.47002 * 299.99412 * 18 17 16 20 20 N 1.46504 * 109.46633 * 179.97438 * 18 17 16 21 21 C 1.36936 * 120.00138 * 85.00671 * 20 18 17 22 22 H 1.08003 * 119.99777 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00176 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00159 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47507 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.47092 * 119.99408 * 25 23 21 28 28 H 1.48501 * 109.47162 * 239.99303 * 25 23 21 29 29 C 1.52997 * 109.46976 * 59.99892 * 18 17 16 30 30 C 1.53004 * 109.47132 * 299.99561 * 29 18 17 31 31 C 1.53000 * 109.47081 * 150.00312 * 3 2 1 32 32 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 34 34 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 35 35 H 1.08998 * 109.46767 * 299.99763 * 5 3 2 36 36 H 1.08995 * 109.47219 * 60.00003 * 5 3 2 37 37 H 1.08994 * 109.46679 * 299.99529 * 6 5 3 38 38 H 1.08999 * 109.46600 * 180.02562 * 6 5 3 39 39 H 1.09001 * 109.47203 * 180.02562 * 7 6 5 40 40 H 1.08998 * 109.47480 * 59.99736 * 7 6 5 41 41 H 1.09001 * 109.46837 * 185.00351 * 10 8 7 42 42 H 1.09003 * 109.47189 * 305.00226 * 10 8 7 43 43 H 0.97000 * 119.99844 * 359.97438 * 13 11 10 44 44 H 1.09006 * 109.47048 * 300.00510 * 16 14 13 45 45 H 1.09011 * 109.46987 * 59.99738 * 16 14 13 46 46 H 1.08999 * 109.47410 * 179.97438 * 17 16 14 47 47 H 1.09002 * 109.47212 * 59.99866 * 17 16 14 48 48 H 0.97000 * 119.99878 * 264.99767 * 20 18 17 49 49 H 0.97000 * 120.00123 * 180.02562 * 24 23 21 50 50 H 1.09003 * 109.47139 * 180.02562 * 29 18 17 51 51 H 1.08998 * 109.47647 * 59.99915 * 29 18 17 52 52 H 1.08998 * 109.47143 * 300.00662 * 30 29 18 53 53 H 1.09003 * 109.47193 * 179.97438 * 30 29 18 54 54 H 1.09000 * 109.46630 * 299.99844 * 31 3 2 55 55 H 1.08999 * 109.47013 * 60.00018 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 2.8407 3.1688 -1.4425 7 6 4.1894 3.1259 -0.7215 8 6 3.9820 2.6600 0.7211 9 1 3.3171 3.3541 1.2350 10 6 5.3307 2.6177 1.4422 11 6 5.8864 4.0144 1.5504 12 8 5.2652 4.9511 1.0950 13 7 7.0743 4.2222 2.1522 14 6 7.6143 5.5799 2.2579 15 1 7.3449 6.1483 1.3677 16 6 7.0329 6.2652 3.4960 17 6 7.5973 7.6829 3.6066 18 6 9.1211 7.6171 3.7284 19 1 9.3902 7.0485 4.6186 20 7 9.6616 8.9747 3.8338 21 6 9.7223 9.5948 5.0532 22 1 9.3713 9.0832 5.9372 23 6 10.2349 10.8810 5.1531 24 7 10.6631 11.5043 4.0758 25 14 10.3170 11.7271 6.8164 26 1 9.7767 10.8198 7.8605 27 1 11.7290 12.0611 7.1327 28 1 9.5101 12.9732 6.7782 29 6 9.7026 6.9318 2.4903 30 6 9.1381 5.5140 2.3797 31 6 3.3590 1.2631 0.7212 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 0.5139 0.8900 35 1 2.8829 1.0774 -1.9563 36 1 1.2569 1.8015 -1.9563 37 1 2.1758 3.8629 -0.9286 38 1 2.9879 3.5009 -2.4702 39 1 4.6331 4.1216 -0.7211 40 1 4.8543 2.4317 -1.2354 41 1 5.1958 2.2020 2.4408 42 1 6.0244 1.9932 0.8793 43 1 7.5713 3.4728 2.5161 44 1 5.9473 6.3117 3.4094 45 1 7.3023 5.6967 4.3862 46 1 7.1827 8.1714 4.4884 47 1 7.3283 8.2517 2.7165 48 1 9.9766 9.4343 3.0397 49 1 11.0216 12.4029 4.1457 50 1 10.7881 6.8845 2.5772 51 1 9.4335 7.5004 1.6001 52 1 9.4072 4.9454 3.2698 53 1 9.5520 5.0259 1.4973 54 1 3.2112 0.9312 1.7488 55 1 4.0242 0.5692 0.2073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034659887.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:52 Heat of formation + Delta-G solvation = -135.052145 kcal Electronic energy + Delta-G solvation = -29760.724705 eV Core-core repulsion = 25795.050719 eV Total energy + Delta-G solvation = -3965.673986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.26060 -40.16227 -39.21433 -37.46202 -36.28810 -34.60536 -33.44932 -32.35763 -31.67969 -31.05572 -29.35581 -27.68295 -27.29384 -25.50529 -23.65905 -23.35507 -23.04178 -22.07651 -21.29371 -20.84583 -20.63913 -19.11561 -17.90629 -17.55123 -17.11972 -16.81023 -16.52580 -16.34472 -16.06226 -15.92646 -15.53164 -15.37284 -15.08376 -14.96825 -14.70572 -14.52077 -14.22798 -14.05125 -13.82352 -13.44933 -13.27291 -13.18076 -13.07690 -12.94831 -12.86112 -12.70452 -12.47527 -12.38178 -12.26353 -12.09708 -12.02368 -11.93878 -11.92497 -11.66270 -11.50023 -11.44473 -11.35718 -11.28327 -11.18511 -10.85360 -10.56855 -10.37396 -9.91369 -8.99389 -7.93798 -5.21853 1.46392 1.47320 1.57091 1.77928 2.25270 2.56432 2.82440 3.39294 3.66801 3.75536 3.76094 3.81537 3.91442 3.95081 4.11080 4.12221 4.23946 4.31448 4.32583 4.38549 4.42151 4.50038 4.51292 4.51908 4.53459 4.59447 4.61000 4.66651 4.68179 4.73093 4.77660 4.86191 4.87493 4.89697 5.01515 5.05658 5.07649 5.13551 5.16137 5.24548 5.25998 5.26457 5.29152 5.34403 5.45966 5.50503 5.55446 5.55819 5.63144 5.67258 6.29005 6.29198 6.71594 7.34479 7.42989 8.12362 8.34588 9.30139 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028157 B = 0.001694 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.189135 B =16520.223696 C =16687.733335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.086 3.914 4 H 0.058 0.942 5 C -0.134 4.134 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.063 4.063 9 H 0.059 0.941 10 C -0.129 4.129 11 C 0.506 3.494 12 O -0.580 6.580 13 N -0.714 5.714 14 C 0.153 3.847 15 H 0.061 0.939 16 C -0.110 4.110 17 C -0.123 4.123 18 C 0.172 3.828 19 H 0.048 0.952 20 N -0.740 5.740 21 C -0.236 4.236 22 H 0.075 0.925 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.971 3.029 26 H -0.266 1.266 27 H -0.292 1.292 28 H -0.297 1.297 29 C -0.114 4.114 30 C -0.105 4.105 31 C -0.103 4.103 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.417 0.583 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.066 0.934 51 H 0.051 0.949 52 H 0.087 0.913 53 H 0.087 0.913 54 H 0.076 0.924 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.787 -29.105 -9.104 34.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.029 3.971 4 H 0.076 0.924 5 C -0.172 4.172 6 C -0.151 4.151 7 C -0.158 4.158 8 C -0.083 4.083 9 H 0.078 0.922 10 C -0.168 4.168 11 C 0.294 3.706 12 O -0.460 6.460 13 N -0.366 5.366 14 C 0.048 3.952 15 H 0.079 0.921 16 C -0.150 4.150 17 C -0.164 4.164 18 C 0.064 3.936 19 H 0.066 0.934 20 N -0.379 5.379 21 C -0.368 4.368 22 H 0.093 0.907 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.190 1.190 27 H -0.220 1.220 28 H -0.224 1.224 29 C -0.153 4.153 30 C -0.143 4.143 31 C -0.141 4.141 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.254 0.746 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.085 0.915 51 H 0.069 0.931 52 H 0.106 0.894 53 H 0.106 0.894 54 H 0.095 0.905 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.122 -28.613 -9.225 34.113 hybrid contribution 0.069 1.540 0.595 1.652 sum -16.053 -27.073 -8.630 32.636 Atomic orbital electron populations 1.22937 0.80080 1.03653 1.00476 1.87862 1.20901 1.28479 1.95209 1.22181 0.95239 0.83954 0.95733 0.92406 1.21983 1.01294 0.96928 0.96972 1.21430 0.96744 0.96259 1.00706 1.21696 0.97321 1.01802 0.94948 1.20755 0.95406 0.96074 0.96020 0.92235 1.21755 0.97898 0.92501 1.04652 1.21329 0.80614 0.92328 0.76309 1.90686 1.59890 1.46321 1.49111 1.46006 1.21559 1.09529 1.59521 1.20760 0.93767 0.83200 0.97454 0.92120 1.21747 0.99156 0.95416 0.98660 1.22027 0.98371 0.96057 0.99938 1.20494 0.91118 0.85137 0.96821 0.93419 1.42688 1.74470 1.14104 1.06615 1.19676 1.32440 0.96881 0.87769 0.90661 1.25545 1.02736 0.98348 1.00458 1.69828 1.49767 1.13721 1.28928 0.85107 0.76829 0.78182 0.79879 1.18987 1.21953 1.22406 1.21645 1.00337 0.95979 0.97313 1.21646 0.92416 0.96265 1.03990 1.21556 0.94916 0.96393 1.01221 0.88497 0.93633 0.93539 0.91155 0.91794 0.92813 0.91517 0.92282 0.91406 0.86381 0.86264 0.74633 0.93508 0.90651 0.94254 0.94493 0.79767 0.94158 0.91532 0.93068 0.89411 0.89418 0.90516 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.41 -6.45 10.35 -148.98 -1.54 -7.99 16 3 C 0.09 1.24 2.61 30.59 0.08 1.32 16 4 H 0.06 0.84 7.79 -2.39 -0.02 0.82 16 5 C -0.13 -1.87 5.54 30.60 0.17 -1.70 16 6 C -0.11 -1.81 5.92 30.60 0.18 -1.63 16 7 C -0.12 -2.06 4.95 30.60 0.15 -1.91 16 8 C -0.06 -0.94 1.84 -10.81 -0.02 -0.96 16 9 H 0.06 1.14 7.95 -2.39 -0.02 1.12 16 10 C -0.13 -1.50 5.18 29.85 0.15 -1.35 16 11 C 0.51 10.20 7.51 87.66 0.66 10.86 16 12 O -0.58 -17.38 13.63 -3.01 -0.04 -17.43 16 13 N -0.71 -12.33 5.08 -442.54 -2.25 -14.57 16 14 C 0.15 3.69 2.46 44.99 0.11 3.80 16 15 H 0.06 1.82 7.58 -2.39 -0.02 1.81 16 16 C -0.11 -3.14 5.49 30.59 0.17 -2.97 16 17 C -0.12 -4.57 5.50 30.59 0.17 -4.40 16 18 C 0.17 6.70 2.77 44.99 0.12 6.82 16 19 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 20 N -0.74 -37.77 5.12 -322.93 -1.65 -39.42 16 21 C -0.24 -13.23 9.93 84.03 0.83 -12.39 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 25 Si 0.97 46.78 29.55 68.60 2.03 48.80 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 29 C -0.11 -3.52 5.39 30.59 0.16 -3.35 16 30 C -0.10 -2.24 5.39 30.60 0.16 -2.08 16 31 C -0.10 -1.28 4.85 30.58 0.15 -1.13 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.43 7.87 -2.39 -0.02 0.41 16 34 H 0.05 0.44 8.09 -2.38 -0.02 0.42 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.83 7.87 -2.39 -0.02 0.81 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.38 5.95 -2.39 -0.01 1.36 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.42 4.07 8.60 -92.71 -0.80 3.28 16 44 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.37 20.47 7.80 -92.71 -0.72 19.74 16 49 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 50 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 53 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 54 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 55 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -72.84 421.87 1.11 -71.73 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -0.67 Total: 32.75 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.95 Total: -13.70 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -3.62 Total: -114.16 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.58 Total: -25.42 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -72.84 1.11 -71.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034659887.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.321 kcal (2) G-P(sol) polarization free energy of solvation -72.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds