Wall clock time and date at job start Tue Mar 31 2020 22:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99370 * 2 1 4 4 C 1.53003 * 109.47122 * 209.99742 * 3 2 1 5 5 C 1.53002 * 109.46855 * 300.00386 * 4 3 2 6 6 C 1.52993 * 109.47442 * 299.99682 * 5 4 3 7 7 C 1.53002 * 109.47412 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47004 * 175.00111 * 7 6 5 9 9 O 1.21274 * 120.00413 * 0.27039 * 8 7 6 10 10 N 1.34784 * 119.99635 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46956 * 325.00197 * 11 10 8 13 13 C 1.52995 * 109.47022 * 84.99732 * 11 10 8 14 14 C 1.53005 * 109.47228 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47076 * 300.00529 * 14 13 11 16 16 H 1.08996 * 109.46825 * 299.99460 * 15 14 13 17 17 N 1.46499 * 109.47155 * 179.97438 * 15 14 13 18 18 C 1.36946 * 120.00158 * 84.99642 * 17 15 14 19 19 H 1.08002 * 119.99237 * 0.02562 * 18 17 15 20 20 C 1.38803 * 120.00048 * 180.02562 * 18 17 15 21 21 N 1.31619 * 120.00410 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 120.00024 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46819 * 59.99994 * 22 20 18 24 24 H 1.48492 * 109.46881 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46946 * 300.00249 * 22 20 18 26 26 C 1.52996 * 109.47151 * 59.99647 * 15 14 13 27 27 C 1.52999 * 109.47155 * 205.00183 * 11 10 8 28 28 C 1.52999 * 109.47197 * 59.99924 * 6 5 4 29 29 C 1.52992 * 109.47354 * 300.00454 * 28 6 5 30 30 H 1.09007 * 109.46682 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47310 * 299.99492 * 1 2 3 32 32 H 1.09005 * 109.47326 * 60.00351 * 1 2 3 33 33 H 1.08998 * 109.47571 * 330.00048 * 3 2 1 34 34 H 1.08999 * 109.46895 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.46849 * 59.99930 * 4 3 2 36 36 H 1.09007 * 109.46611 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.47516 * 60.00201 * 5 4 3 38 38 H 1.09006 * 109.47001 * 300.00431 * 6 5 4 39 39 H 1.09005 * 109.47089 * 54.99859 * 7 6 5 40 40 H 1.09002 * 109.46787 * 295.00201 * 7 6 5 41 41 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 42 42 H 1.09001 * 109.47831 * 300.00098 * 13 11 10 43 43 H 1.08996 * 109.47227 * 60.00172 * 13 11 10 44 44 H 1.08996 * 109.47630 * 180.02562 * 14 13 11 45 45 H 1.09007 * 109.46829 * 60.00417 * 14 13 11 46 46 H 0.97002 * 120.00261 * 264.99972 * 17 15 14 47 47 H 0.96996 * 120.00259 * 180.02562 * 21 20 18 48 48 H 1.09006 * 109.46787 * 180.02562 * 26 15 14 49 49 H 1.09003 * 109.47095 * 60.00411 * 26 15 14 50 50 H 1.08996 * 109.46825 * 299.99663 * 27 11 10 51 51 H 1.08993 * 109.47204 * 60.00070 * 27 11 10 52 52 H 1.09006 * 109.46731 * 60.00342 * 28 6 5 53 53 H 1.08997 * 109.47332 * 179.97438 * 28 6 5 54 54 H 1.08999 * 109.47251 * 299.99340 * 29 28 6 55 55 H 1.09001 * 109.47640 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.3588 1.2635 -0.7212 5 6 4.2926 0.2895 0.0001 6 6 4.5000 0.7553 1.4426 7 6 5.4344 -0.2183 2.1637 8 6 5.7366 0.3048 3.5442 9 8 5.2486 1.3507 3.9167 10 7 6.5446 -0.3926 4.3672 11 6 6.8390 0.1162 5.7091 12 1 6.8938 1.2045 5.6810 13 6 5.7306 -0.3139 6.6720 14 6 6.0383 0.2169 8.0736 15 6 7.3769 -0.3495 8.5510 16 1 7.3217 -1.4377 8.5787 17 7 7.6718 0.1592 9.8928 18 6 7.1603 -0.4752 10.9934 19 1 6.5398 -1.3508 10.8721 20 6 7.4393 0.0072 12.2647 21 7 8.1951 1.0746 12.4124 22 14 6.7421 -0.8586 13.7660 23 1 7.2294 -2.2610 13.7994 24 1 7.1845 -0.1519 14.9948 25 1 5.2587 -0.8515 13.6971 26 6 8.4853 0.0806 7.5880 27 6 8.1777 -0.4498 6.1868 28 6 3.1514 0.7975 2.1638 29 6 2.2176 1.7714 1.4426 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.3448 1.9995 -0.5138 34 1 3.8022 2.2592 -0.7208 35 1 3.2111 0.9315 -1.7489 36 1 5.2534 0.2592 -0.5140 37 1 3.8494 -0.7063 0.0000 38 1 4.9433 1.7512 1.4426 39 1 6.3626 -0.3155 1.6006 40 1 4.9530 -1.1932 2.2418 41 1 6.9319 -1.2311 4.0707 42 1 4.7768 0.0893 6.3317 43 1 5.6757 -1.4021 6.7000 44 1 5.2489 -0.0898 8.7598 45 1 6.0934 1.3053 8.0459 46 1 8.2294 0.9455 10.0017 47 1 8.3903 1.4114 13.3008 48 1 9.4389 -0.3234 7.9280 49 1 8.5404 1.1689 7.5604 50 1 8.1228 -1.5380 6.2149 51 1 8.9673 -0.1433 5.5008 52 1 2.7081 -0.1983 2.1638 53 1 3.2992 1.1290 3.1916 54 1 2.6608 2.7672 1.4426 55 1 1.2565 1.8012 1.9561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034803326.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:13 Heat of formation + Delta-G solvation = -132.837505 kcal Electronic energy + Delta-G solvation = -30042.818954 eV Core-core repulsion = 26077.241002 eV Total energy + Delta-G solvation = -3965.577952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.25953 -40.21598 -39.22298 -37.16733 -36.26884 -34.60476 -33.04681 -32.26075 -31.69083 -31.63899 -29.30915 -27.79998 -27.04183 -25.48522 -23.69277 -23.59135 -22.96976 -22.04592 -21.28367 -20.72127 -20.48286 -19.11094 -17.87708 -17.34082 -17.15730 -16.88046 -16.80217 -16.25670 -16.12082 -15.80752 -15.39663 -15.22832 -15.06056 -14.90003 -14.86444 -14.50459 -14.13863 -13.97280 -13.66749 -13.43220 -13.26642 -13.17661 -13.08671 -12.93600 -12.85839 -12.78306 -12.46050 -12.35920 -12.23402 -12.15328 -12.09778 -12.03727 -11.96116 -11.65767 -11.46402 -11.44668 -11.30298 -11.17322 -10.95479 -10.85258 -10.60555 -10.25170 -9.92578 -8.99672 -7.93432 -5.21740 1.45964 1.49187 1.55135 1.77887 2.28756 2.56575 2.93088 3.38948 3.71589 3.78032 3.79400 3.82641 3.89261 3.93303 4.02471 4.23284 4.25192 4.30788 4.37603 4.41320 4.43862 4.49845 4.50972 4.55113 4.59966 4.63002 4.65102 4.66924 4.69064 4.74745 4.86305 4.87374 4.87586 4.96387 5.01049 5.09860 5.12535 5.14856 5.19122 5.21821 5.25250 5.28299 5.32747 5.38691 5.48310 5.52965 5.54881 5.62333 5.64784 5.68347 6.29119 6.34559 6.71390 7.34379 7.42943 8.12199 8.34667 9.29982 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.001870 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.120448 B =14971.396388 C =15772.817797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.088 3.912 4 C -0.115 4.115 5 C -0.104 4.104 6 C -0.067 4.067 7 C -0.129 4.129 8 C 0.505 3.495 9 O -0.581 6.581 10 N -0.715 5.715 11 C 0.153 3.847 12 H 0.060 0.940 13 C -0.110 4.110 14 C -0.122 4.122 15 C 0.173 3.827 16 H 0.047 0.953 17 N -0.739 5.739 18 C -0.237 4.237 19 H 0.075 0.925 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.972 3.028 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.281 1.281 26 C -0.114 4.114 27 C -0.105 4.105 28 C -0.109 4.109 29 C -0.139 4.139 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.416 0.584 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.036 0.964 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.067 0.933 49 H 0.051 0.949 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.056 0.944 53 H 0.049 0.951 54 H 0.068 0.932 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 -4.838 -33.236 34.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.030 3.970 4 C -0.153 4.153 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.169 4.169 8 C 0.293 3.707 9 O -0.461 6.461 10 N -0.367 5.367 11 C 0.048 3.952 12 H 0.078 0.922 13 C -0.150 4.150 14 C -0.163 4.163 15 C 0.065 3.935 16 H 0.066 0.934 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.092 0.908 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.801 3.199 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.207 1.207 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.147 4.147 29 C -0.177 4.177 30 H 0.111 0.889 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.253 0.747 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.105 0.895 51 H 0.107 0.893 52 H 0.075 0.925 53 H 0.068 0.932 54 H 0.086 0.914 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.078 -4.409 -32.871 34.385 hybrid contribution -0.454 0.312 1.638 1.728 sum -9.532 -4.098 -31.233 32.911 Atomic orbital electron populations 1.22897 0.80616 1.03383 1.00235 1.87888 1.20279 1.28297 1.95070 1.22195 0.95533 0.84438 0.94816 1.21649 0.93483 1.00832 0.99290 1.21450 0.99761 0.99449 0.93432 1.20855 0.94405 0.98427 0.94877 1.21787 1.02850 1.01202 0.91037 1.21397 0.77331 0.83810 0.88113 1.90676 1.52104 1.25543 1.77735 1.46024 1.49870 1.26464 1.14333 1.20759 0.94565 0.98417 0.81432 0.92161 1.21743 0.98080 1.01197 0.93947 1.22026 0.99364 0.99471 0.95479 1.20485 0.92689 0.96421 0.83952 0.93448 1.42672 1.60238 1.33803 1.01137 1.19589 1.23536 1.07633 0.86178 0.90757 1.25565 1.01852 0.99316 1.00426 1.69814 1.43820 1.26491 1.22054 0.85235 0.77935 0.77880 0.78879 1.20145 1.22251 1.20719 1.21635 0.98422 1.00565 0.94626 1.21630 0.95477 1.01826 0.95355 1.21482 0.95079 0.99208 0.98926 1.21982 0.99547 0.99490 0.96647 0.88924 0.94400 0.93091 0.91472 0.90136 0.90468 0.90309 0.91444 0.92152 0.86105 0.87243 0.74686 0.93682 0.90732 0.94311 0.94477 0.79744 0.94135 0.91453 0.93042 0.89457 0.89350 0.92543 0.93226 0.91370 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 113.37 1.23 1.52 16 2 O -0.40 -6.50 9.00 -148.98 -1.34 -7.84 16 3 C 0.09 1.27 2.92 30.60 0.09 1.36 16 4 C -0.12 -1.37 5.66 30.60 0.17 -1.20 16 5 C -0.10 -1.26 5.06 30.59 0.15 -1.10 16 6 C -0.07 -1.09 1.84 -10.80 -0.02 -1.11 16 7 C -0.13 -1.76 5.18 29.85 0.15 -1.60 16 8 C 0.51 11.05 7.52 87.65 0.66 11.71 16 9 O -0.58 -18.38 13.62 -3.01 -0.04 -18.42 16 10 N -0.72 -13.34 5.08 -442.54 -2.25 -15.59 16 11 C 0.15 3.86 2.45 44.99 0.11 3.97 16 12 H 0.06 1.88 7.58 -2.38 -0.02 1.86 16 13 C -0.11 -3.27 5.49 30.59 0.17 -3.10 16 14 C -0.12 -4.65 5.50 30.60 0.17 -4.48 16 15 C 0.17 6.82 2.77 44.99 0.12 6.94 16 16 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 17 N -0.74 -38.11 5.12 -322.95 -1.65 -39.77 16 18 C -0.24 -13.43 9.93 84.03 0.83 -12.60 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 21 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 22 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 C -0.11 -3.58 5.39 30.58 0.16 -3.41 16 27 C -0.10 -2.31 5.39 30.58 0.16 -2.15 16 28 C -0.11 -2.26 4.80 30.59 0.15 -2.11 16 29 C -0.14 -2.50 5.63 30.59 0.17 -2.32 16 30 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.04 0.46 7.87 -2.39 -0.02 0.44 16 32 H 0.05 0.46 8.09 -2.38 -0.02 0.44 16 33 H 0.07 0.81 7.79 -2.39 -0.02 0.79 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.07 0.91 7.68 -2.39 -0.02 0.89 16 38 H 0.06 1.19 7.96 -2.38 -0.02 1.17 16 39 H 0.12 0.96 8.14 -2.38 -0.02 0.95 16 40 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.42 4.65 8.60 -92.71 -0.80 3.85 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.37 20.63 7.80 -92.71 -0.72 19.90 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 49 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 52 H 0.06 1.19 7.68 -2.38 -0.02 1.17 16 53 H 0.05 1.35 5.94 -2.39 -0.01 1.34 16 54 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 55 H 0.05 1.00 7.87 -2.39 -0.02 0.98 16 Total: -1.00 -73.36 419.80 1.32 -72.05 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.67 Total: 34.81 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 4.96 Total: -13.89 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -3.62 Total: -115.75 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -1.38 Total: -26.27 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -73.36 1.32 -72.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034803326.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.792 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds