Wall clock time and date at job start Tue Mar 31 2020 22:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99823 * 2 1 4 4 C 1.53000 * 109.47240 * 150.00101 * 3 2 1 5 5 C 1.53002 * 109.47598 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46821 * 300.00309 * 5 4 3 7 7 C 1.53002 * 109.46821 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46970 * 174.99809 * 7 6 5 9 9 O 1.21278 * 120.00013 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99686 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99938 * 180.02562 * 10 8 7 12 12 H 1.09002 * 108.44609 * 327.31452 * 11 10 8 13 13 C 1.52563 * 108.39055 * 209.69334 * 11 10 8 14 14 C 1.50886 * 109.35965 * 153.82470 * 13 11 10 15 15 C 1.53951 * 110.09516 * 91.88437 * 14 13 11 16 16 N 1.47605 * 112.13843 * 319.43347 * 15 14 13 17 17 C 1.36940 * 118.63881 * 138.15192 * 16 15 14 18 18 H 1.07999 * 119.99679 * 206.26531 * 17 16 15 19 19 C 1.38811 * 120.00193 * 26.26752 * 17 16 15 20 20 N 1.31619 * 120.00110 * 15.79414 * 19 17 16 21 21 Si 1.86798 * 119.99834 * 195.79758 * 19 17 16 22 22 H 1.48498 * 109.47353 * 59.99702 * 21 19 17 23 23 H 1.48509 * 109.46891 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47022 * 299.99507 * 21 19 17 25 25 C 1.44577 * 122.71704 * 317.86951 * 16 15 14 26 26 C 1.47091 * 108.51038 * 84.99921 * 11 10 8 27 27 C 1.52995 * 109.47522 * 59.99730 * 6 5 4 28 28 C 1.52994 * 109.47566 * 270.00155 * 3 2 1 29 29 H 1.09003 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47055 * 299.99655 * 1 2 3 31 31 H 1.09004 * 109.47575 * 59.99900 * 1 2 3 32 32 H 1.08998 * 109.47252 * 30.00835 * 3 2 1 33 33 H 1.09005 * 109.46949 * 59.99829 * 4 3 2 34 34 H 1.09004 * 109.47171 * 300.00393 * 4 3 2 35 35 H 1.09001 * 109.47006 * 179.97438 * 5 4 3 36 36 H 1.08995 * 109.46688 * 59.99993 * 5 4 3 37 37 H 1.09005 * 109.47093 * 299.99275 * 6 5 4 38 38 H 1.08998 * 109.47530 * 54.99557 * 7 6 5 39 39 H 1.09000 * 109.46785 * 294.99860 * 7 6 5 40 40 H 0.97002 * 120.00419 * 0.02562 * 10 8 7 41 41 H 1.09005 * 109.48605 * 273.78642 * 13 11 10 42 42 H 1.08994 * 109.49190 * 33.83244 * 13 11 10 43 43 H 1.08996 * 109.36398 * 212.07680 * 14 13 11 44 44 H 1.08998 * 109.36320 * 331.69456 * 14 13 11 45 45 H 1.09000 * 108.94160 * 198.75450 * 15 14 13 46 46 H 1.08997 * 108.94773 * 80.12256 * 15 14 13 47 47 H 0.97000 * 120.00244 * 180.02562 * 20 19 17 48 48 H 1.09004 * 109.45083 * 210.77099 * 25 16 15 49 49 H 1.09001 * 109.44689 * 330.71685 * 25 16 15 50 50 H 1.09000 * 109.32478 * 63.64420 * 26 11 10 51 51 H 1.08995 * 109.33444 * 304.16225 * 26 11 10 52 52 H 1.09005 * 109.47308 * 59.99677 * 27 6 5 53 53 H 1.08995 * 109.47211 * 179.97438 * 27 6 5 54 54 H 1.09008 * 109.47487 * 300.00021 * 28 3 2 55 55 H 1.09001 * 109.47301 * 60.00200 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3588 1.2633 0.7212 5 6 3.9809 2.6612 0.7218 6 6 4.1881 3.1277 -0.7205 7 6 4.8096 4.5258 -0.7199 8 6 5.1270 4.9351 -2.1351 9 8 4.8808 4.1824 -3.0537 10 7 5.6844 6.1375 -2.3799 11 6 5.9924 6.5356 -3.7558 12 1 6.2634 5.6436 -4.3205 13 6 7.1944 7.4747 -3.7275 14 6 7.9228 7.3948 -5.0465 15 6 7.3871 8.4673 -6.0123 16 7 5.9195 8.6034 -5.9339 17 6 5.3749 9.8597 -5.9529 18 1 4.4157 10.0394 -5.4903 19 6 6.0557 10.9021 -6.5667 20 7 7.0511 10.6445 -7.3884 21 14 5.5591 12.6704 -6.2265 22 1 5.7011 12.9541 -4.7759 23 1 6.4357 13.5879 -6.9981 24 1 4.1461 12.8750 -6.6350 25 6 5.0328 7.4649 -5.8438 26 6 4.7822 7.1182 -4.3554 27 6 2.8395 3.1699 -1.4417 28 6 2.2176 1.7715 -1.4424 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.3450 1.9993 0.5139 33 1 4.0241 0.5694 0.2074 34 1 3.2111 0.9313 1.7489 35 1 4.9415 2.6311 1.2361 36 1 3.3155 3.3547 1.2359 37 1 4.8536 2.4342 -1.2346 38 1 5.7263 4.5158 -0.1303 39 1 4.1060 5.2359 -0.2854 40 1 5.8816 6.7394 -1.6452 41 1 6.8536 8.4967 -3.5616 42 1 7.8670 7.1804 -2.9218 43 1 8.9880 7.5565 -4.8815 44 1 7.7723 6.4075 -5.4831 45 1 7.6634 8.1956 -7.0312 46 1 7.8451 9.4253 -5.7666 47 1 7.5271 11.3729 -7.8170 48 1 4.0847 7.7043 -6.3254 49 1 5.4881 6.6099 -6.3435 50 1 4.5122 8.0251 -3.8143 51 1 3.9637 6.4019 -4.2848 52 1 2.1740 3.8635 -0.9276 53 1 2.9872 3.5027 -2.4691 54 1 2.8829 1.0776 -1.9564 55 1 1.2568 1.8016 -1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052975748.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:17 Heat of formation + Delta-G solvation = -106.571764 kcal Electronic energy + Delta-G solvation = -30605.885655 eV Core-core repulsion = 26641.446671 eV Total energy + Delta-G solvation = -3964.438984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.29615 -40.16268 -39.15750 -37.51759 -36.27606 -34.10111 -33.33601 -32.94874 -31.70582 -31.53335 -28.48490 -27.75512 -26.74594 -25.63797 -24.86041 -23.65153 -22.60287 -21.50153 -21.33669 -20.84604 -20.64351 -18.57650 -17.90272 -17.57416 -17.22109 -16.97470 -16.71820 -16.16478 -15.99776 -15.78928 -15.49742 -15.27408 -15.14952 -14.95463 -14.74621 -14.37593 -14.24100 -14.04672 -13.77501 -13.59879 -13.24075 -13.18582 -13.02335 -12.91816 -12.79304 -12.66915 -12.44000 -12.42380 -12.10106 -12.04463 -12.01891 -11.75444 -11.73957 -11.56719 -11.53488 -11.48354 -11.41688 -11.34710 -11.16699 -10.62914 -10.42950 -10.27602 -9.95154 -8.64862 -7.83430 -5.29995 1.48167 1.49303 1.56399 1.81572 2.34342 2.53256 2.83351 3.29940 3.66763 3.73348 3.75714 3.80567 3.85412 4.01126 4.13014 4.17234 4.30094 4.34600 4.40897 4.45349 4.46392 4.47613 4.50703 4.54418 4.57639 4.61438 4.70067 4.71945 4.79036 4.83081 4.86564 4.95393 4.99917 5.01168 5.07445 5.13236 5.15717 5.16606 5.18557 5.25037 5.25994 5.30884 5.35823 5.50571 5.52811 5.58190 5.59151 5.68088 5.70391 5.82755 6.30877 6.42388 6.74474 7.20265 7.44904 7.95784 8.35805 9.21526 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.002062 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.945751 B =13577.951979 C =13955.384892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.089 3.911 4 C -0.114 4.114 5 C -0.103 4.103 6 C -0.070 4.070 7 C -0.129 4.129 8 C 0.503 3.497 9 O -0.582 6.582 10 N -0.721 5.721 11 C 0.168 3.832 12 H 0.056 0.944 13 C -0.100 4.100 14 C -0.130 4.130 15 C 0.188 3.812 16 N -0.601 5.601 17 C -0.262 4.262 18 H 0.064 0.936 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.279 1.279 25 C 0.158 3.842 26 C -0.132 4.132 27 C -0.114 4.114 28 C -0.134 4.134 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.412 0.588 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.050 0.950 45 H -0.011 1.011 46 H 0.046 0.954 47 H 0.249 0.751 48 H 0.036 0.964 49 H 0.032 0.968 50 H 0.055 0.945 51 H 0.051 0.949 52 H 0.068 0.932 53 H 0.055 0.945 54 H 0.050 0.950 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 -16.122 21.945 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.032 3.968 4 C -0.152 4.152 5 C -0.140 4.140 6 C -0.089 4.089 7 C -0.168 4.168 8 C 0.292 3.708 9 O -0.462 6.462 10 N -0.372 5.372 11 C 0.064 3.936 12 H 0.074 0.926 13 C -0.138 4.138 14 C -0.169 4.169 15 C 0.063 3.937 16 N -0.323 5.323 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.793 3.207 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.205 1.205 25 C 0.031 3.969 26 C -0.173 4.173 27 C -0.152 4.152 28 C -0.172 4.172 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.248 0.752 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.008 0.992 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.050 0.950 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.087 0.913 53 H 0.074 0.926 54 H 0.069 0.931 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.645 -16.733 21.194 27.809 hybrid contribution -0.326 1.483 -0.672 1.660 sum -6.971 -15.251 20.522 26.502 Atomic orbital electron populations 1.22932 0.80047 1.03587 1.00562 1.87871 1.21028 1.29010 1.95177 1.22265 0.95592 0.83955 0.95035 1.21576 0.94647 0.98191 1.00743 1.21532 1.02196 0.95355 0.94923 1.20894 0.96194 0.95146 0.96663 1.21794 1.04534 0.98619 0.91870 1.21431 0.75968 0.80710 0.92733 1.90664 1.53935 1.53326 1.48296 1.46342 1.63210 1.18454 1.09240 1.19630 0.94523 0.96783 0.82659 0.92625 1.21118 0.95586 0.99551 0.97581 1.21834 0.99972 0.98995 0.96112 1.20798 0.82546 0.96450 0.93928 1.43853 1.01342 1.01690 1.85444 1.19437 1.04548 0.86498 1.28783 0.91800 1.25766 0.99567 1.02170 0.96956 1.70233 1.25803 1.31352 1.30818 0.85388 0.77308 0.80276 0.77735 1.20124 1.22266 1.20508 1.20662 0.93289 0.89310 0.93679 1.21566 0.97424 0.99611 0.98669 1.21611 0.96301 0.95959 1.01313 1.21956 1.00546 0.97296 0.97446 0.88730 0.92821 0.94055 0.91011 0.92410 0.90296 0.89503 0.90036 0.92512 0.86158 0.86677 0.75210 0.92120 0.89799 0.90526 0.93115 0.99248 0.93566 0.94235 0.94583 0.94968 0.92667 0.93012 0.91289 0.92585 0.93128 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.55 16 2 O -0.41 -7.96 10.35 -148.98 -1.54 -9.51 16 3 C 0.09 1.48 2.61 30.59 0.08 1.56 16 4 C -0.11 -1.62 5.57 30.59 0.17 -1.45 16 5 C -0.10 -1.14 5.20 30.59 0.16 -0.98 16 6 C -0.07 -1.17 1.84 -10.80 -0.02 -1.19 16 7 C -0.13 -1.86 5.17 29.85 0.15 -1.70 16 8 C 0.50 12.27 7.39 87.66 0.65 12.92 16 9 O -0.58 -19.56 13.47 -3.02 -0.04 -19.60 16 10 N -0.72 -17.02 4.88 -452.05 -2.21 -19.22 16 11 C 0.17 5.30 1.96 43.01 0.08 5.38 16 12 H 0.06 2.00 6.66 -2.39 -0.02 1.98 16 13 C -0.10 -3.14 4.99 29.76 0.15 -2.99 16 14 C -0.13 -4.68 5.71 30.23 0.17 -4.51 16 15 C 0.19 8.99 4.66 86.49 0.40 9.39 16 16 N -0.60 -29.76 2.27 -698.36 -1.59 -31.34 16 17 C -0.26 -14.19 9.44 84.03 0.79 -13.39 16 18 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 19 C -0.05 -2.73 4.87 84.86 0.41 -2.32 16 20 N -0.94 -55.04 11.00 21.65 0.24 -54.80 16 21 Si 0.96 44.40 29.58 68.60 2.03 46.43 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 C 0.16 6.85 5.66 87.37 0.49 7.35 16 26 C -0.13 -4.74 5.20 29.39 0.15 -4.58 16 27 C -0.11 -2.29 4.95 30.61 0.15 -2.14 16 28 C -0.13 -2.70 5.54 30.61 0.17 -2.53 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.04 0.53 7.87 -2.39 -0.02 0.51 16 32 H 0.07 0.99 7.79 -2.39 -0.02 0.97 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 1.23 7.96 -2.38 -0.02 1.21 16 38 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.41 7.06 8.61 -92.71 -0.80 6.27 16 41 H 0.06 2.19 7.48 -2.38 -0.02 2.17 16 42 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 43 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.05 1.80 7.32 -2.39 -0.02 1.78 16 45 H -0.01 -0.57 8.03 -2.39 -0.02 -0.59 16 46 H 0.05 2.46 6.33 -2.39 -0.02 2.44 16 47 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 48 H 0.04 1.61 7.98 -2.39 -0.02 1.59 16 49 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 50 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.05 1.86 7.95 -2.39 -0.02 1.84 16 52 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 53 H 0.06 1.53 5.95 -2.39 -0.01 1.51 16 54 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 55 H 0.06 1.14 7.87 -2.39 -0.02 1.12 16 Total: -1.00 -69.54 412.20 2.34 -67.20 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.04 Total: 20.47 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 5.40 Total: 0.38 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -3.55 Total: -105.37 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.58 Total: -29.11 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.54 2.34 -67.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052975748.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.367 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds