Wall clock time and date at job start Tue Mar 31 2020 22:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00261 * 2 1 4 4 C 1.53002 * 109.47141 * 209.99724 * 3 2 1 5 5 C 1.53001 * 109.47280 * 299.99792 * 4 3 2 6 6 C 1.52992 * 109.46969 * 300.00174 * 5 4 3 7 7 C 1.53001 * 109.46969 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47199 * 174.99967 * 7 6 5 9 9 O 1.21282 * 120.00180 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00109 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00006 * 180.27141 * 10 8 7 12 12 H 1.08996 * 110.21081 * 36.66581 * 11 10 8 13 13 C 1.50128 * 110.24533 * 158.74338 * 11 10 8 14 14 C 1.54843 * 110.81487 * 216.65583 * 13 11 10 15 15 C 1.54896 * 110.14405 * 321.13661 * 14 13 11 16 16 N 1.43440 * 116.08061 * 318.64073 * 15 14 13 17 17 C 1.36937 * 120.53749 * 271.54147 * 16 15 14 18 18 H 1.08000 * 119.99680 * 336.74428 * 17 16 15 19 19 C 1.38811 * 119.99795 * 156.73614 * 17 16 15 20 20 N 1.31615 * 120.00334 * 340.42021 * 19 17 16 21 21 Si 1.86797 * 119.99867 * 160.41634 * 19 17 16 22 22 H 1.48508 * 109.46769 * 60.00273 * 21 19 17 23 23 H 1.48501 * 109.47314 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47449 * 300.00710 * 21 19 17 25 25 C 1.50173 * 118.92489 * 91.56305 * 16 15 14 26 26 C 1.46233 * 107.53233 * 289.59034 * 25 16 15 27 27 C 1.53003 * 109.47634 * 59.99847 * 6 5 4 28 28 C 1.53001 * 109.47068 * 300.00093 * 27 6 5 29 29 H 1.09011 * 109.46926 * 59.99935 * 1 2 3 30 30 H 1.08990 * 109.47389 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47271 * 300.00463 * 1 2 3 32 32 H 1.09002 * 109.47034 * 329.99457 * 3 2 1 33 33 H 1.09000 * 109.47021 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.47200 * 60.00239 * 4 3 2 35 35 H 1.08999 * 109.46980 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47025 * 60.00087 * 5 4 3 37 37 H 1.09000 * 109.47176 * 299.99820 * 6 5 4 38 38 H 1.08995 * 109.47097 * 54.99631 * 7 6 5 39 39 H 1.08998 * 109.47066 * 294.99869 * 7 6 5 40 40 H 0.97000 * 119.99897 * 0.02562 * 10 8 7 41 41 H 1.08996 * 109.21326 * 337.00686 * 13 11 10 42 42 H 1.09006 * 109.20404 * 96.31811 * 13 11 10 43 43 H 1.09003 * 109.36060 * 200.93058 * 14 13 11 44 44 H 1.08996 * 109.35732 * 81.34754 * 14 13 11 45 45 H 1.09002 * 108.16116 * 196.92289 * 15 14 13 46 46 H 1.09000 * 107.99983 * 80.23202 * 15 14 13 47 47 H 0.97001 * 120.00210 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.84456 * 170.08326 * 25 16 15 49 49 H 1.08999 * 109.84526 * 49.09809 * 25 16 15 50 50 H 1.08997 * 108.52307 * 297.16665 * 26 25 16 51 51 H 1.09000 * 108.40016 * 179.56089 * 26 25 16 52 52 H 1.09000 * 109.46861 * 59.99780 * 27 6 5 53 53 H 1.08995 * 109.47310 * 179.97438 * 27 6 5 54 54 H 1.08996 * 109.46637 * 299.99882 * 28 27 6 55 55 H 1.08991 * 109.47240 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3590 1.2632 -0.7212 5 6 4.2927 0.2892 0.0001 6 6 4.5001 0.7551 1.4425 7 6 5.4333 -0.2193 2.1640 8 6 5.7357 0.3038 3.5446 9 8 5.2528 1.3529 3.9149 10 7 6.5429 -0.3941 4.3679 11 6 6.8321 0.1115 5.7122 12 1 5.9487 0.5930 6.1315 13 6 7.2883 -1.0087 6.6015 14 6 6.7508 -0.8217 8.0416 15 6 6.7953 0.6751 8.4374 16 7 7.9682 1.3982 8.0386 17 6 9.0705 1.4379 8.8500 18 1 8.9660 1.2690 9.9115 19 6 10.3223 1.6951 8.3080 20 7 10.5301 1.5217 7.0199 21 14 11.7120 2.2875 9.4067 22 1 11.9780 1.2734 10.4585 23 1 12.9367 2.4883 8.5911 24 1 11.3261 3.5721 10.0440 25 6 7.9673 2.1115 6.7171 26 6 7.9979 1.0940 5.6673 27 6 3.1514 0.7974 2.1638 28 6 2.2176 1.7714 1.4425 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.3450 1.9994 -0.5139 33 1 3.8021 2.2590 -0.7216 34 1 3.2112 0.9313 -1.7489 35 1 5.2537 0.2594 -0.5134 36 1 3.8494 -0.7066 0.0001 37 1 4.9434 1.7509 1.4425 38 1 6.3616 -0.3174 1.6013 39 1 4.9512 -1.1937 2.2423 40 1 6.9295 -1.2330 4.0717 41 1 6.9231 -1.9550 6.2024 42 1 8.3779 -1.0269 6.6250 43 1 7.3652 -1.3971 8.7341 44 1 5.7221 -1.1785 8.0924 45 1 6.7070 0.7426 9.5217 46 1 5.9275 1.1660 7.9970 47 1 11.4047 1.7018 6.6411 48 1 8.8480 2.7491 6.6401 49 1 7.0639 2.7140 6.6223 50 1 8.9277 0.5323 5.7563 51 1 7.9897 1.5969 4.7003 52 1 2.7080 -0.1984 2.1638 53 1 3.2992 1.1289 3.1915 54 1 2.6610 2.7671 1.4425 55 1 1.2567 1.8012 1.9560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052975749.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:21 Heat of formation + Delta-G solvation = -95.536378 kcal Electronic energy + Delta-G solvation = -31181.067852 eV Core-core repulsion = 27217.107398 eV Total energy + Delta-G solvation = -3963.960454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.25473 -40.22196 -39.18093 -37.13851 -36.08655 -34.19356 -33.11197 -32.56321 -32.03652 -31.62816 -28.48585 -27.65269 -27.06419 -25.35952 -24.92369 -23.59703 -22.68609 -21.72011 -21.18909 -20.63501 -20.44857 -18.58480 -17.82767 -17.22110 -17.12370 -16.90634 -16.73287 -16.23363 -16.06793 -15.66677 -15.56455 -15.37185 -15.02274 -14.90279 -14.79342 -14.43075 -14.03333 -13.80732 -13.55121 -13.52430 -13.23524 -13.22041 -13.05808 -12.93320 -12.85033 -12.60804 -12.55384 -12.33304 -12.09475 -12.05175 -11.95683 -11.85311 -11.70473 -11.64816 -11.43861 -11.27061 -11.19857 -11.02903 -10.94452 -10.61548 -10.48231 -10.23351 -9.80858 -8.67016 -7.81440 -5.22573 1.48186 1.51475 1.56946 1.81472 2.37176 2.55020 2.94837 3.31524 3.58347 3.75417 3.81463 3.88426 4.00330 4.04832 4.15384 4.24211 4.25811 4.27941 4.45936 4.51756 4.53040 4.54740 4.62140 4.64503 4.66971 4.68904 4.69993 4.75164 4.84780 4.88412 4.88757 4.93974 4.96450 5.09124 5.13010 5.17933 5.21747 5.22338 5.23570 5.32718 5.34261 5.37724 5.39796 5.53564 5.56674 5.64462 5.66154 5.69974 5.80977 6.08219 6.36835 6.42325 6.75330 7.17118 7.46052 7.90190 8.43086 9.23111 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024328 B = 0.002276 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.671121 B =12301.379589 C =12653.234047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.090 3.910 4 C -0.115 4.115 5 C -0.103 4.103 6 C -0.067 4.067 7 C -0.128 4.128 8 C 0.504 3.496 9 O -0.579 6.579 10 N -0.716 5.716 11 C 0.163 3.837 12 H 0.064 0.936 13 C -0.103 4.103 14 C -0.132 4.132 15 C 0.148 3.852 16 N -0.600 5.600 17 C -0.260 4.260 18 H 0.064 0.936 19 C -0.044 4.044 20 N -0.917 5.917 21 Si 0.959 3.041 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.287 1.287 25 C 0.174 3.826 26 C -0.114 4.114 27 C -0.108 4.108 28 C -0.138 4.138 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.410 0.590 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.033 0.967 46 H 0.032 0.968 47 H 0.247 0.753 48 H 0.058 0.942 49 H 0.005 0.995 50 H 0.077 0.923 51 H 0.017 0.983 52 H 0.059 0.941 53 H 0.049 0.951 54 H 0.066 0.934 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.792 -6.722 -17.250 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.032 3.968 4 C -0.153 4.153 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.168 4.168 8 C 0.292 3.708 9 O -0.459 6.459 10 N -0.367 5.367 11 C 0.058 3.942 12 H 0.082 0.918 13 C -0.141 4.141 14 C -0.173 4.173 15 C 0.020 3.980 16 N -0.322 5.322 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.240 4.240 20 N -0.563 5.563 21 Si 0.788 3.212 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.213 1.213 25 C 0.050 3.950 26 C -0.154 4.154 27 C -0.145 4.145 28 C -0.176 4.176 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.246 0.754 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.023 0.977 50 H 0.095 0.905 51 H 0.035 0.965 52 H 0.078 0.922 53 H 0.068 0.932 54 H 0.084 0.916 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.869 -6.112 -17.055 24.754 hybrid contribution 1.077 0.484 0.772 1.411 sum -15.792 -5.627 -16.283 23.370 Atomic orbital electron populations 1.22904 0.80543 1.03409 1.00289 1.87890 1.20369 1.28213 1.95067 1.22164 0.95334 0.84508 0.94777 1.21648 0.93625 1.00653 0.99346 1.21443 0.99667 0.99642 0.93305 1.20855 0.94624 0.98103 0.95013 1.21780 1.02651 1.01458 0.90881 1.21406 0.77318 0.83959 0.88110 1.90650 1.53037 1.24800 1.77441 1.46190 1.49507 1.26105 1.14923 1.20009 0.96849 0.95198 0.82122 0.91767 1.21536 1.00478 0.97009 0.95102 1.22723 1.00200 0.98884 0.95540 1.20565 0.88782 0.91364 0.97309 1.44318 1.12954 1.55205 1.19766 1.19377 0.86087 1.43563 0.89966 0.91812 1.25536 0.98880 1.02354 0.97183 1.70109 1.22074 1.51932 1.12166 0.85473 0.78902 0.78464 0.78312 1.20424 1.22143 1.21320 1.19919 0.96964 0.93583 0.84562 1.21069 0.99152 0.98565 0.96566 1.21467 0.94725 0.99417 0.98919 1.21977 0.99593 0.99346 0.96657 0.93121 0.88876 0.94254 0.91254 0.90356 0.90334 0.90775 0.91157 0.92606 0.86973 0.86927 0.75379 0.90562 0.93402 0.93096 0.90615 0.94879 0.95000 0.94363 0.92332 0.97654 0.90498 0.96459 0.92205 0.93202 0.91575 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.54 16 2 O -0.40 -7.14 9.00 -148.98 -1.34 -8.48 16 3 C 0.09 1.49 2.92 30.60 0.09 1.58 16 4 C -0.12 -1.74 5.66 30.60 0.17 -1.57 16 5 C -0.10 -1.68 5.06 30.59 0.15 -1.53 16 6 C -0.07 -1.44 1.84 -10.79 -0.02 -1.46 16 7 C -0.13 -2.60 5.17 29.85 0.15 -2.44 16 8 C 0.50 15.17 7.41 87.66 0.65 15.82 16 9 O -0.58 -22.59 13.68 -3.04 -0.04 -22.63 16 10 N -0.72 -21.07 5.01 -447.72 -2.24 -23.31 16 11 C 0.16 6.08 2.17 43.91 0.10 6.17 16 12 H 0.06 2.67 5.83 -2.39 -0.01 2.65 16 13 C -0.10 -3.65 5.30 30.30 0.16 -3.49 16 14 C -0.13 -4.74 6.41 31.87 0.20 -4.54 16 15 C 0.15 6.29 5.18 87.59 0.45 6.74 16 16 N -0.60 -30.34 2.60 -707.83 -1.84 -32.18 16 17 C -0.26 -14.22 9.63 84.03 0.81 -13.41 16 18 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 19 C -0.04 -2.39 4.91 84.86 0.42 -1.98 16 20 N -0.92 -51.80 9.43 21.65 0.20 -51.60 16 21 Si 0.96 44.88 29.60 68.60 2.03 46.91 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 C 0.17 8.80 5.24 83.58 0.44 9.24 16 26 C -0.11 -5.17 4.73 28.35 0.13 -5.03 16 27 C -0.11 -2.57 4.80 30.60 0.15 -2.42 16 28 C -0.14 -2.80 5.63 30.60 0.17 -2.63 16 29 H 0.05 0.51 8.09 -2.38 -0.02 0.49 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.50 7.87 -2.39 -0.02 0.48 16 32 H 0.07 0.95 7.79 -2.39 -0.02 0.93 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.18 7.68 -2.39 -0.02 1.16 16 37 H 0.06 1.43 7.95 -2.39 -0.02 1.41 16 38 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.41 9.25 8.45 -92.71 -0.78 8.47 16 41 H 0.08 2.15 7.81 -2.39 -0.02 2.13 16 42 H 0.05 2.03 6.83 -2.38 -0.02 2.02 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.03 1.39 7.99 -2.39 -0.02 1.37 16 46 H 0.03 1.32 6.88 -2.39 -0.02 1.30 16 47 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.06 3.31 6.05 -2.39 -0.01 3.30 16 49 H 0.01 0.27 8.12 -2.39 -0.02 0.25 16 50 H 0.08 3.91 5.29 -2.39 -0.01 3.89 16 51 H 0.02 0.79 7.91 -2.39 -0.02 0.77 16 52 H 0.06 1.40 7.68 -2.39 -0.02 1.38 16 53 H 0.05 1.52 5.95 -2.39 -0.01 1.51 16 54 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 55 H 0.06 1.16 7.87 -2.39 -0.02 1.14 16 Total: -1.00 -66.59 405.02 2.30 -64.29 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.07 Total: 26.40 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.46 Total: 0.61 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.88 Total: -107.09 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.38 Total: -31.11 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.59 2.30 -64.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052975749.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.244 kcal (2) G-P(sol) polarization free energy of solvation -66.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds